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Properties
| Property Name | Value |
|---|
| Product | sec14 cytosolic factor |
| Orig transcript id | gnl|cribi|Naga_100007g111.6500.mrna |
| Orig protein id | gnl|cribi|Naga_100007g111.6500 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 3; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:715471..717556 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1470 ID=rna1470|Name=rna1470|organism=Nannochloropsis gaditana|type=mRNA|length=1498bp
ATGTTTGACAAACGTACTGGTCGAAGCAGTCACATCACTCCCCACACCTA
CAAAAGGCTAGGGAAAGTGCACTATTATCGCAAAGAAATGGACAGCTTTC
GGCAGCGCCCCACGAGCAAGAGATTTCGTTATGAGGCTGATGATTGCCGT
TCAACGAAGACAAAGCCACGCCTACCCAGTTGCTTAATAGGGACAACCCC
TGAGGTCAACAGTACAGCCTTGAGAGACCGAAGGAATACCATAACACCAC
AGGCGGGAGTGTCAGGACAAGGCGAGGCGGAGACTGACCCTCATCGATTG
CGGCAGCGACAGAAACAGATCGACTATGGCAAGAATACCTTGGGATACGA
CCGTTATAAGGAGATAATTCCAAAGGAACTCCGACGACGTACAGATCCAA
GAACACCGGACATTCATGCCCGAATCAGTACCAAGCGTTTCAATGGCCTG
GTGCGTGCATGGCGGCGGCGCCTGCACGACTTTGATCCGCATGGCACAAT
TATTGTTCCATCTATGCCATCTTCATCTGCAGCATCGCCTTCAGCCGTGG
TATCCGACGTACTCATAGGAGGGAGTTCTCCGGAACGGGCTCCCTTTGGC
GAGACGCCAAGTCCCTTCTCAGAACAAACCAGCGAACAGAAAGGCTTGGC
TCCCACTCATGCCAGCAATGGCAAGGAAGACGACATTAATACGCAGCAGG
GGGGAGCTGGGAGTCCGGGGGTAAAAGACAATGACAAGAGATCACGGGCG
ATTCGTTGTAGCAAAGATGGTAGTTTAGCCACGGTTGAATTTACTTCAGG
ACTGCGTGAAGACGCAGTGGAGGGAGAAGATGTGCTGCAGAGCATTGAAG
AAACGAATTGGTTTCATGACGAAAGGGGCGCAAATGAGCGCTACGCCGGC
ACATACCGAGACACGGGCATGCTGCCAGGTGACCCGCCCTTCGCCTGCTA
CAGCGATGATGATCTTCTGTAAGGAAGAAGTGGAGCAAAGAAGAGTGGTG
TTTTTCAGTGGATCGGATCGAAGGAGCTCAGAGAGTTTGATGAGTAAATC
CAGTTTTCTCGGTGTTCTAGAAACACCAGATCTGGGGCGACAAGAGCTGA
AGTTAGTCACGGCCGCAAAATAGATGACAATCATTACTTGAATTTTTTGC
GTGAGTTTAGCGGCGCAAATCGTACTTGAATATGGGACGTAAGATATTAA
TCAGAAGAAGATGGACGAAAGCATGATGTTGACTGTTGGAACGGCGCCAT
ACTTTTCGTCGGAGACTTCTGCTCTTCGAAGAAATCCGCGAGAAGGATCT
CGGCTGCGGATCGGGGGGTCAGGGTCCCTTTCCCCAATTCTTTTTCCATC
CGCTCCACACCGGCTTTTATTTTCGAGGATGTTCTCGCTCGTCGCACGAG
AATGTCCTCTAAACTATTCCAGACCCAATATTTATCCTGATTCTGTCGCT
TTAAGCGGAGATATCCGGACCGCCTGAAAACGTCACTACATGAACACA back to topprotein sequence of rna1470 >rna1470-protein ID=rna1470-protein|Name=rna1470|organism=Nannochloropsis gaditana|type=polypeptide|length=255bp
MRKSISLKVKHPYRKEFLSSIVLLSQLNSFWEANYHESRCSLFWRFLVAN
DGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLC
LGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRL
LFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERL
QKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKM
CPSLE back to topmRNA from alignment at CM002457.1:715471..717556+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1470 ID=rna1470|Name=rna1470|organism=Nannochloropsis gaditana|type=mRNA|length=2086bp|location=Sequence derived from alignment at CM002457.1:715471..717556+ (Nannochloropsis gaditana)
TGAAGGGCTTCGTAAGCCAAATCAAGACATTGATGCATTGATACGCTTTA
CTGAAGTTTGTGCGTTGAAACGCCGTTCTCCTAGAAGGTTTCCTCACTGA
AGTACGTGCCAGAAGCGCGCGGAACACTCGCTGCTGGAAGGCGGGAGCTG
ATCAAGAGGTTTGTCGGGCGTCTACAAGTTGTCAGCAAGCTGGTTACAAA
CTTTGAGGCGTGGATTATCTTCTAACCGTGCGTTGATAGAATGGTCGGAC
GAGCACGCTGCGCTCTTTTGATGCTATATTATCCTTCGTCACTCATTGAA
ATCGCGCTACACAAGGACCAAATAACATCAGGGATGGTAGATTTCTCGCC
GTTGTAAGGATTAGAGGAAGCGGTCTCTAGATTCCGCGACACGTATGGAG
CGACAACGAGATATTCTGGAGTGTCAATACAATCAGGAAAAATTTCGAGA
GAGGGGTCAACAGGCAGACCAACAATCGGCTTTGGTGGATGCGACGCAGA
GCATTGATGTTGTACCCTCCTACGTAGGAGGCCGCCAACCCCTTCCTGAA
GAACTTCAGCTCATGGCTGAATTTCAACGCGTCTTAGATAGCGCAAATGT
CATACTACCTCGCAAGTAAGTGGAGGTATTCCTACCTCTAGTTGACCACA
TCTCACTTGTGCGAAGGTGATCGGCAGAGCGTCTGGATCTCACTGTTGAG
AAGTGAATCAACCAGCCCGTGCATCGTATATGAGCAGCTCAATTTTCAAA
ATAGAATTGAAGCTTTGTGAGGATTTGAATTAGTACTTGTCCCTCTCATT
GTATGTATTATACGAATTTGACTTAATACCAAAAAAATTCTATGAGGAAA
TCCATTTCTCTAAAAGTCAAACATCCGTATCGAAAGGAGTTCTTATCATC
AATCGTTCTATTATCACAACTGAACAGTTTTTGGGAAGCTAACTACCACG
AGTCCCGatgctccctcttctggcGCTTTTTAGTTGCAAACGATGGACAC
GTGATACGTGCCAAAAACCAACTCGCGCGAGATGTTGCCTGGAGGGATGA
AATCAGGTTGAAAGACTTGCAGAacatggcgcgaaaagaTGTAGTGGGGA
TTGAAGACGCATTTTTCATACGTCATTATCCTTGCCTCTGTCTGGGGTTT
GAGGATGGGAGTGAAAATTATTCGCCAGTCGTCTACAGACGCTTGACGCA
CTTAAACACAAAAGTGCTtgcggagaagggggtgaCAGTCGAGAAAATGA
TAAAGCATGAGCTATGGCAATATGAAAAAGACTGTCGCCTTTTATTCGAA
CATCCAGaaagctttcctcctcggcaacTGAAGGTGCGTATATTTTGAAT
GGATAGGTAGAGTCAAGAATTTTGTTAAACTTTTTAGCCAACTCATTTGG
AATGTCGGAACTATCTCGTACATCTGCGAATGTTGGCCACTTTTTGTAGA
CATAATATGCCAGTTGCCACTATCGCAAGCGTTCTTACATCACATTTTTG
CTGACGTGCACTGAAAAAGATCGTACTCGGTCCTTTCTCACACCTTTTTG
TCACATGCATACAAGGTCATTATCGACATTTCAGGAATGACGTGGGCACA
ATGTACAAAAGATCTGATAAGCATCCTTTCcggattttcttcctttaGTA
AAGTGCATCATCCCGAACGCCTGCAAAAGTTGTACATTATTGGTGCTCCA
AAACCATTCTCTTTTGTATGGAATACCATCGTCTCTCGTATTATCCCCGA
GAGGACCAGAAATAAGATTATGATTTTGCATTCCATTCAAGGCAATACAT
GGCTCGAAAAGTGGATGAAAATGTGTCCGTCTTTGGAGTAACTAATTTTT
TTTTCGCACGAGTAATGCAATTTGTTCTACCGTGGGCGGCCGTAAATGGA
ACATTTCAGTCTGTAAGCGCTAACGCCAGTACGAGGGAAGTAATCTTTGA
GTGACATGCCATACCCAAAACGTTGTGCAGGTTTTGATTTAGGCGTACTC
AAATCAGAAAAATCAACTACTCTAAAACTCACCTCGACATCACCAGAGCT
CACGAGAACTTTTGGGCCGATATCTGAATGCTGATG back to topCoding sequence (CDS) from alignment at CM002457.1:715471..717556+ >rna1470 ID=rna1470|Name=rna1470|organism=Nannochloropsis gaditana|type=CDS|length=1536bp|location=Sequence derived from alignment at CM002457.1:715471..717556+ (Nannochloropsis gaditana)
ATGAGGAAATCCATTTCTCTAAAAGTCAAACATCCGTATCGAAAGGAGTT
CTTATCATCAATCGTTCTATTATCACAACTGAACAGTTTTTGGGAAGCTA
ACTACCACGAGTCCCGatgctccctcttctggcGCTTTTTAGTTGCAAAC
GATGGACACGTGATACGTGCCAAAAACCAACTCGCGCGAGATGTTGCCTG
GAGGGATGAAATCAGGTTGAAAGACTTGCAGAacatggcgcgaaaagaTG
TAGTGGGGATTGAAGACGCATTTTTCATACGTCATTATCCTTGCCTCTGT
CTGGGGTTTGAGGATGGGAGTGAAAATTATTCGCCAGTCGTCTACAGACG
CTTGACGCACTTAAACACAAAAGTGCTtgcggagaagggggtgaCAGTCG
AGAAAATGATAAAGCATGAGCTATGGCAATATGAAAAAGACTGTCGCCTT
TTATTCGAACATCCAGaaagctttcctcctcggcaacTGAAGGTCATTAT
CGACATTTCAGGAATGACGTGGGCACAATGTACAAAAGATCTGATAAGCA
TCCTTTCcggattttcttcctttaGTAAAGTGCATCATCCCGAACGCCTG
CAAAAGTTGTACATTATTGGTGCTCCAAAACCATTCTCTTTTGTATGGAA
TACCATCGTCTCTCGTATTATCCCCGAGAGGACCAGAAATAAGATTATGA
TTTTGCATTCCATTCAAGGCAATACATGGCTCGAAAAGTGGATGAAAATG
TGTCCGTCTTTGGAGTAAATGAGGAAATCCATTTCTCTAAAAGTCAAACA
TCCGTATCGAAAGGAGTTCTTATCATCAATCGTTCTATTATCACAACTGA
ACAGTTTTTGGGAAGCTAACTACCACGAGTCCCGatgctccctcttctgg
cGCTTTTTAGTTGCAAACGATGGACACGTGATACGTGCCAAAAACCAACT
CGCGCGAGATGTTGCCTGGAGGGATGAAATCAGGTTGAAAGACTTGCAGA
acatggcgcgaaaagaTGTAGTGGGGATTGAAGACGCATTTTTCATACGT
CATTATCCTTGCCTCTGTCTGGGGTTTGAGGATGGGAGTGAAAATTATTC
GCCAGTCGTCTACAGACGCTTGACGCACTTAAACACAAAAGTGCTtgcgg
agaagggggtgaCAGTCGAGAAAATGATAAAGCATGAGCTATGGCAATAT
GAAAAAGACTGTCGCCTTTTATTCGAACATCCAGaaagctttcctcctcg
gcaacTGAAGGTCATTATCGACATTTCAGGAATGACGTGGGCACAATGTA
CAAAAGATCTGATAAGCATCCTTTCcggattttcttcctttaGTAAAGTG
CATCATCCCGAACGCCTGCAAAAGTTGTACATTATTGGTGCTCCAAAACC
ATTCTCTTTTGTATGGAATACCATCGTCTCTCGTATTATCCCCGAGAGGA
CCAGAAATAAGATTATGATTTTGCATTCCATTCAAGGCAATACATGGCTC
GAAAAGTGGATGAAAATGTGTCCGTCTTTGGAGTAA back to top
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