EWM29173.1, cds1467 (CDS) Nannochloropsis gaditana

Overview
NameEWM29173.1
Unique Namecds1467
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:716312..716803 +
Alignment locationCM002457.1:717036..717311 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29173.1
Productsec14 cytosolic factor
Orig transcript idgnl|cribi|Naga_100007g111.6500.mrna
GbkeyCDS
Noteencoded by transcript variant 3; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:716312..716803 +
CM002457.1supercontigCM002457.1:717036..717311 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001251CRAL-TRIO_dom
Homology
BLAST of EWM29173.1 vs. NCBI_GenBank
Match: gi|585111693|gb|EWM29173.1| (sec14 cytosolic factor [Nannochloropsis gaditana])

HSP 1 Score: 531.176 bits (1367), Expect = 0.000e+0
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query:    1 MRKSISLKVKHPYRKEFLSSIVLLSQLNSFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE 255
            MRKSISLKVKHPYRKEFLSSIVLLSQLNSFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE
Sbjct:    1 MRKSISLKVKHPYRKEFLSSIVLLSQLNSFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE 255          
BLAST of EWM29173.1 vs. NCBI_GenBank
Match: gi|585111691|gb|EWM29171.1| (sec14 cytosolic factor [Nannochloropsis gaditana])

HSP 1 Score: 480.33 bits (1235), Expect = 3.160e-170
Identity = 230/249 (92.37%), Postives = 239/249 (95.98%), Query Frame = 0
Query:    7 LKVKHPYRKEFLSSIVLLSQLNSFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE 255
            L++   +++   S+ V+L +  +FWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE
Sbjct:   54 LQLMAEFQRVLDSANVILPR--NFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPSLE 300          
BLAST of EWM29173.1 vs. NCBI_GenBank
Match: gi|585111692|gb|EWM29172.1| (sec14 cytosolic factor [Nannochloropsis gaditana])

HSP 1 Score: 295.049 bits (754), Expect = 3.274e-98
Identity = 141/162 (87.04%), Postives = 150/162 (92.59%), Query Frame = 0
Query:    6 SLKVKHPYRKEFLSSIVLLSQLNSFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVII 167
             L++   +++   S+ V+L +  +FWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKV I
Sbjct:   53 ELQLMAEFQRVLDSANVILPR--NFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVRI 212          
BLAST of EWM29173.1 vs. NCBI_GenBank
Match: gi|551628289|ref|XP_005794125.1| (hypothetical protein EMIHUDRAFT_431773 [Emiliania huxleyi CCMP1516] >gi|485648790|gb|EOD41696.1| hypothetical protein EMIHUDRAFT_431773 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 75.0998 bits (183), Expect = 2.096e-12
Identity = 58/206 (28.16%), Postives = 97/206 (47.09%), Query Frame = 0
Query:   36 HESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDA---FFIRHYPCLCLGFEDGSENYSPVVYRRLTHLN-TKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHS 237
            H SR  L  R+L A   HV ++ + L  D+AWR + R+++        V+G E A    F+ H    CL          PV+ +   H+  +++L    +T++++  +  W  E+  R L E        Q  +I D  G +  Q  +  + +L   ++    H+PERL    II AP   +FVW  IVS  + E+T+ K+ I+ +
Sbjct:   10 HLSRADLL-RWLRARKLHVGKSSDFLQADLAWRRKHRIEERSGEDADAVLGCEVAKLKAFLPHENPPCL-----DRRGRPVIIKHFGHVYFSRLLNSTNITLDQLCDYNWWVNEQYTRRLNE----VGAEQWLIICDAKGFSPTQMDRVALKVLKSMANIDADHYPERLGGFVIINAPASLAFVWK-IVSAWLDEKTKAKVQIISA 204          
BLAST of EWM29173.1 vs. NCBI_GenBank
Match: gi|551660359|ref|XP_005832947.1| (hypothetical protein GUITHDRAFT_108004 [Guillardia theta CCMP2712] >gi|428177086|gb|EKX45967.1| hypothetical protein GUITHDRAFT_108004 [Guillardia theta CCMP2712])

HSP 1 Score: 74.3294 bits (181), Expect = 6.756e-12
Identity = 59/207 (28.50%), Postives = 97/207 (46.86%), Query Frame = 0
Query:   37 ESRCSLFWRFLVANDGHVIRAKNQLARDVAWRD-----EIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLT-HLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHS 237
            ES  +L  RFL A  G V  A   L  D  WR+      +R K + +M       I     +   P  CLG +   +   P++YR++T ++N + LAE G +VE+ + ++ W  E+   ++ +        Q   I+D+  +   +   +L +I+  F++ +K H PERL    II AP  F  VW   V   + + T+ K+ I  S
Sbjct:   66 ESMEALLQRFLKARSGDVNLAFKFLKEDCEWREANQILSLRTKSMDDMLVAGRNPILKETIVSMIPQGCLGRD---KQGRPILYRKVTGNMNVQKLAELGYSVEEFLIYQAWMLERTVAMMNDK------GQWISIMDLGELNLTKMMGNL-NIVKAFTALAKNHFPERLAHNIIINAPTVFGIVWRA-VQVWLDKETQKKVSIFSS 261          
BLAST of EWM29173.1 vs. NCBI_GenBank
Match: gi|676393519|ref|XP_009040037.1| (hypothetical protein AURANDRAFT_66459 [Aureococcus anophagefferens] >gi|323449504|gb|EGB05392.1| hypothetical protein AURANDRAFT_66459 [Aureococcus anophagefferens])

HSP 1 Score: 73.9442 bits (180), Expect = 2.191e-11
Identity = 52/191 (27.23%), Postives = 89/191 (46.60%), Query Frame = 0
Query:   45 RFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVY-RRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMI 234
            +F+V   G V  A  + A    WR E  +  +   A      I+     RHYP    G     E    ++Y  R+ H++   L   GVT++ +++H +  +E    +L   P+  P     V++D+ G+  +QC       +   ++ +K H+PER  ++ I  AP+ FS VW  +VS ++   T+ KI I
Sbjct:  813 KFIVGTGGDVREASRRWAETSRWRRERDVDAVMGEAHPKFAAIK-----RHYPHYWCGRGRRGE----LIYVERVGHVDAAGLKRDGVTIDHLVRHYILLHEFTWSVLAPAPDG-PTSYQCVVLDVDGVQLSQCRGIRFDYVRRCAAIAKEHYPERCSRMVIANAPQWFSVVWK-MVSPLVDPNTKKKIRI 992          
BLAST of EWM29173.1 vs. NCBI_GenBank
Match: gi|470289052|ref|XP_004342753.1| (SEC14-like protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 73.9442 bits (180), Expect = 2.391e-11
Identity = 62/216 (28.70%), Postives = 99/216 (45.83%), Query Frame = 0
Query:   41 SLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHY-PCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPE--SFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPS 253
            S+  RFL A +  V +A   L R + WR  +    +  M ++  V       +R Y PC   G+    ++  PV   R+  L+ K +  K V+ E +IK  ++  E   +L  E  E    P      I+D  G+      +  +SI+         ++PE + +L +I AP  F   W +IV  +  ERTRNKI+IL    G+ +LE+   + PS
Sbjct:  246 SVLLRFLRAREFSVEKAHEMLTRSLYWRQAVGADHILEMYKQPDV-------LRDYLPC---GWHHFDKDGRPVFVFRVGQLDVKGVM-KSVSEEDLIKQLIFINETGMKLASEATERTGRPIHDFTCIVDFEGLGLKHLWRPGVSIIQKIIQQDTANYPETMARLVVIRAPTLFPVAW-SIVRNVFDERTRNKIVIL----GDNFLEQLADILPS 445          
BLAST of EWM29173.1 vs. NCBI_GenBank
Match: gi|765557877|gb|KJE98137.1| (SEC14-like protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 73.9442 bits (180), Expect = 2.412e-11
Identity = 62/216 (28.70%), Postives = 99/216 (45.83%), Query Frame = 0
Query:   41 SLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHY-PCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPE--SFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPS 253
            S+  RFL A +  V +A   L R + WR  +    +  M ++  V       +R Y PC   G+    ++  PV   R+  L+ K +  K V+ E +IK  ++  E   +L  E  E    P      I+D  G+      +  +SI+         ++PE + +L +I AP  F   W +IV  +  ERTRNKI+IL    G+ +LE+   + PS
Sbjct:  261 SVLLRFLRAREFSVEKAHEMLTRSLYWRQAVGADHILEMYKQPDV-------LRDYLPC---GWHHFDKDGRPVFVFRVGQLDVKGVM-KSVSEEDLIKQLIFINETGMKLASEATERTGRPIHDFTCIVDFEGLGLKHLWRPGVSIIQKIIQQDTANYPETMARLVVIRAPTLFPVAW-SIVRNVFDERTRNKIVIL----GDNFLEQLADILPS 460          
BLAST of EWM29173.1 vs. NCBI_GenBank
Match: gi|765557878|gb|KJE98138.1| (SEC14-like protein, variant [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 73.559 bits (179), Expect = 2.830e-11
Identity = 62/216 (28.70%), Postives = 99/216 (45.83%), Query Frame = 0
Query:   41 SLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHY-PCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPE--SFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPS 253
            S+  RFL A +  V +A   L R + WR  +    +  M ++  V       +R Y PC   G+    ++  PV   R+  L+ K +  K V+ E +IK  ++  E   +L  E  E    P      I+D  G+      +  +SI+         ++PE + +L +I AP  F   W +IV  +  ERTRNKI+IL    G+ +LE+   + PS
Sbjct:  145 SVLLRFLRAREFSVEKAHEMLTRSLYWRQAVGADHILEMYKQPDV-------LRDYLPC---GWHHFDKDGRPVFVFRVGQLDVKGVM-KSVSEEDLIKQLIFINETGMKLASEATERTGRPIHDFTCIVDFEGLGLKHLWRPGVSIIQKIIQQDTANYPETMARLVVIRAPTLFPVAW-SIVRNVFDERTRNKIVIL----GDNFLEQLADILPS 344          
BLAST of EWM29173.1 vs. NCBI_GenBank
Match: gi|325190291|emb|CCA24767.1| (SEC14 cytosolic factor putative [Albugo laibachii Nc14])

HSP 1 Score: 67.781 bits (164), Expect = 2.356e-9
Identity = 49/191 (25.65%), Postives = 94/191 (49.21%), Query Frame = 0
Query:   45 RFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMIL 235
            RF+ A  G+  R K +  + ++WR E    D+  + R+     E+    + YP     F   S+  +PV Y +   ++  VL + G+++E +I H ++  E     L+ + E     +   ++D+SG+  +    +++  +   S+F+  H+PER   ++II  P  F+ +W  IV  +I   TR K+ +L
Sbjct:  456 RFIAAEKGNEERGKERYLQTLSWRKE---NDVDQILRRPHRNFEN--IKKCYPQY---FHGRSKAGNPVYYEKPGKIDLLVLKQLGLSIEDLIYHYMYITE----FLWTYIEPDDAARSITVLDVSGIGMSSLGGEVLDFIKRASTFTAAHYPERSAHIFIINIPGWFNMIWR-IVKPLIDPVTREKVHML 633          
The following BLAST results are available for this feature:
BLAST of EWM29173.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111693|gb|EWM29173.1|0.000e+0100.00sec14 cytosolic factor [Nannochloropsis gaditana][more]
gi|585111691|gb|EWM29171.1|3.160e-17092.37sec14 cytosolic factor [Nannochloropsis gaditana][more]
gi|585111692|gb|EWM29172.1|3.274e-9887.04sec14 cytosolic factor [Nannochloropsis gaditana][more]
gi|551628289|ref|XP_005794125.1|2.096e-1228.16hypothetical protein EMIHUDRAFT_431773 [Emiliania ... [more]
gi|551660359|ref|XP_005832947.1|6.756e-1228.50hypothetical protein GUITHDRAFT_108004 [Guillardia... [more]
gi|676393519|ref|XP_009040037.1|2.191e-1127.23hypothetical protein AURANDRAFT_66459 [Aureococcus... [more]
gi|470289052|ref|XP_004342753.1|2.391e-1128.70SEC14-like protein [Capsaspora owczarzaki ATCC 308... [more]
gi|765557877|gb|KJE98137.1|2.412e-1128.70SEC14-like protein [Capsaspora owczarzaki ATCC 308... [more]
gi|765557878|gb|KJE98138.1|2.830e-1128.70SEC14-like protein, variant [Capsaspora owczarzaki... [more]
gi|325190291|emb|CCA24767.1|2.356e-925.65SEC14 cytosolic factor putative [Albugo laibachii ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1470rna1470Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications