rna1342, rna1342 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1342
Unique Name	rna1342
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2929
Alignment location	CM002457.1:395539..397760 -

Link to JBrowse

Properties


Property Name	Value
Product	u4 tri-snrnp-associated protein 2
Orig transcript id	gnl\|cribi\|Naga_100205g2.2986.mrna
Orig protein id	gnl\|cribi\|Naga_100205g2.2986
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:395539..397760 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100205g2	gene1296	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1342	rna1342-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29334.1	cds1340	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:395539..397760-
coding sequence from alignment at CM002457.1:395539..397760-

mRNA sequence

>rna1342 ID=rna1342|Name=rna1342|organism=Nannochloropsis gaditana|type=mRNA|length=2929bp
GCTTTTGACAGGGGGAGAATACACGCGTCGCCACGGAAAAGTCTGAGAAG
CATTAGGTTTCTCAAGGTTATTGCGCGGCGAGCAAAGCATGGAGCTGGTA
AAGGACGCAGCAAACGCGGTTCCCCCCCTAAGACGAGTTACCGCGCATAT
TTTACGGGGACGCAATGCCACCTCCAAATACTTCCGTTTGTGGATTCTAT
CTACAATGCTCGTCCTACATCTGTTGCCAGGACTCATGACTGTCGTTACG
GCTGACGATGGCTTGGAAGCTCAGGACACGGCGCGAGCATCTTGCGATTC
GGACATGACTAGTAGCAGGAAGCGCAGCAGCCGCGGCATTAGTGTCGGTG
GCAGCCGCTTTTTGAGCAGGAAACGAGGCACGGCCGGCAAGCATGTACTT
ATGGTCTCGATCAATGAATTGAGCCACATTAAACCTTTGACCGCCCTGGC
ACGTGAATTGCTGCAGAGAGGGCACCACATCACATTCGTCGCACCTGAGT
CGTGCTTACTCAACACTGCCTTCACCTCCACCGACAAGCTCGCAACGGAA
GCACCTTGCCAAATCGATACGAAGGGGTGGATGTCAAAATATTTGCCAAA
AGCGACCTTTGTGAGCGCTGGCGCCGCCTTGACGTCGGCGGAAAAGGAAG
CAGCCACCCCCCGAGACTTGAGGCGGGCGGTCCTCTACGCCCTGCACACG
GTGTCCGACGTGAATGAGGCGTTGCTCACGCGGCTTCTCCGCACCTTCAG
TCCAGCCTCCAACTCTTCCGGCGGCATGCATGGTGGAGAGGACGAAGGCC
AGGTGGCGCGGCTCCCGGCGCCGGACATGATGGTGGCGGATTTCCTTACC
ACCGCCGCAGTGGACGCAGCCGAGGCCCTGGGCGTCCCTCTGATCGCCAA
CAATCCTTTCCCCATATGCCACGACCTAACGGAGCCACAAGGCATCCTGG
TGCCCGTGCACGCCTTCCCAGCCCCTCTCCGGAGTCTGACCACGTTCAAA
GGCCGCATCGCCAACCTGATCAACCACTTCCTGTGGCTCGGGGTGGGGCT
CTACGCTGCCCGGCTTCGGAATCTGACCCGCTCTAAGCACGGCCTCCCCG
CGCTCCCCTGTCTGGAGCAAATGGCGTTTCGAGGCAGCGCCTTGGAAGCC
CGGGCCTGGATATTGCAGAACACGGTCTTCGGGTTGGAGATCCCCCGGGT
GGTGGACCCGCGCACCCACATGCTCGGGCCGCTGCTGCTGCCCTTCGGGG
GCGAGGCCTGCACTCCGGGCAAGGCCGAGAGAGACTGCCGCGCGGCGCTC
AAGTGGCTGGGCAAGGGGAGGTCGGAGCGGCCCGTCCTGTACGTGGGCCT
TGCCGAGGCCCTGACCCCGGCGCCCATGCCAGTGACCCTGGCCGCCATGA
AAGCCCTGGCATCGGACCAAATCGGGCAGCACTACGACGTGCTCTGGGTC
CTGGACGAGGAGAGCCGCCTCCGCTTGGACCGACCGGTCCCGGTCCACAT
GCTGGTGGTCACTGCCGTGAACCAGCGAGCCGTCTTGAGCCACCCACGGG
CCGCCCTTGTCCTGGCCCAACCCGCCCTGGGCCTCATCTCCGAGGTCCTC
TGGCACGGCCTGCCCGTCCTGGGGCTCCCGCTCCGAAGCTACGACCGCGG
CGCCTGCACTCTGGCCCAGGACGCCGGGGCGGCCATGTGCCTCCCTCCCT
CGGGCCCTGGCGGGTGGCCGGAGGCTGAGAACTTGGTGCGGGCCATCTGG
GAGCTGGCACCTCCCCCCCGCCCTCCTGTTGCCCCTTCCGCCCTCGACCC
TTCCTTTTCCTTCCCGGGAAGGCCAAGCAACTTCAGGGCCCAGGCCCGCC
GACTGGCGATCATCATGCACGCCTCGGGCGGGGTGGCGCGGGCGGCCGAC
CTGGTGGAACTTGGCATGCGTGTGGGTCTCGCGCACTTGCAACGCCCGAG
CCTGGACATTGGGTTTGGGATGGGAAGCTCCTGGTTGGGGGGTTCGATGG
TGGACGTCCGCCTGGTCCTCTTCCTGATCCTTTTGCTCTGTTACTGGACC
CTGGCCCTCAGCTACCGGTTGGGGAGACGGCTGCACAAGTGGTGGAGCGT
GGTGGGAAGGAAGGCCCAAGGCGTGCGCGGGGTTTCGGAGAGCGACAGAG
CCCAGTCCGTGTTGCAGCAACACCAGTACACGCAGAGCAGCCTGCACAAT
GGCGGGCGGGCGATGGCTACCTCGGCTCCGCCCCCCTTTGGGTCGCTCTC
CCCCGCAGCCTCCTCACAGGCGCCCCTCTCGCCCGCGCCCCCGGCCCTTG
CTGCGAGCAGCTCCACGCCCAACATGATGATGCCGGGAGGGTCGGGGGGA
GAAAAGGTGACCCGGCGGGGGGGGGATGCAACCTCCTCTCCCTCCAGCGA
ACGGAACATGAGCGGAAGGAGTGGCGGAGGGCGTGGAGGAGGAGAGGGAG
GAGGAGGGGCAGGGAATGCGCCGAGGGACCGACCGCCGTTGCCCCCGCGG
ATGACCAATTTTTGAGGAACGGGTGCGAGTGATGGAGCTTGTATTTTAGT
CTGTGAGTACCTTGTCGTTGTCCCTCCCAACTGCAAGGCTCGAGAAAGCA
GGAGGCAGGGGGAAAGCGTGACGGTGAGGCTGAGTGCTGGGAGCCAAGCA
CGGCGTGTGGACGCCTTCGAGAAAGTGAGAGTCGCCGTCTTCTAGAACCG
CAGGAGGCCTCTGCTGACGGAGTAAAATTTTGGGCCGTGGCAAGTGTGAG
CAATAGCATGCATAAAAATCAAAACAAACGTGCGCATGCACCCCTCTTCG
ACGTGGAGATAGTCATACTCTAGACTACTTGTTGCTTCTCTCCCTTCCTT
ACGCCCCACACCCTATCGGGCGCGGCCCTTCTTCCTGTTCCCTCAGTGGC
CCCTTCCGCAGCCTCGCGCTCGTTCCACC

protein sequence of rna1342

>rna1342-protein ID=rna1342-protein|Name=rna1342|organism=Nannochloropsis gaditana|type=polypeptide|length=585bp
MKRAREPEDNNGTVHGSRDRASTSSVAPKASSLRPKCPYLDTVNRTYLDF
DFEKLCSVSLSNMNIYVCLVCGKFFQGRGPRTHAHTHSLHDFHHVFMNLH
TARIFCLPDNYEVLDSSLDDIKRALFPSFTPAAIAQLDTNTTLVRDVHGV
SYLPGFVGLNNLKSTDYVNVVLQALGHVTPLRNYFLQPSLYEAGAKNQLV
LRFGEVMRKLWSQDNFKSTVSPHDFLQEVVSASGKRFAIGKPGEAVDFLS
WLLHQLHVGLGGTMPMVGCKGGEGGKKKKAGRRSVVLDCFQGEIRVRTLT
KARKDWTVGGRGEEEGDEDDGTGRGNGAQEEKEGEPAGEWAVSETRSPFL
FLTVDIPQTPLFKDSQGGVIIPHIPLYSVLDKFNGVKVVDAVKAGVHTRK
QYWITRLPQYLILSLARLTRNHFFVEKNPTIVNFPVKNLELRDYFLPEAG
LPTEEGLKTMTVGELKGFVQAHGGGDAKEAVEREDLEEQARAVLNEVAGT
KYDLVANVVHDSPPGQEKKEAARGEATPPGTYRVHVFNRASDQWYEIQDL
HVQETLPQLITISESCVLIYEKKGVERARGCGRGH

mRNA from alignment at CM002457.1:395539..397760-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1342 ID=rna1342|Name=rna1342|organism=Nannochloropsis gaditana|type=mRNA|length=2222bp|location=Sequence derived from alignment at CM002457.1:395539..397760- (Nannochloropsis gaditana)
TTTCCACAGCTCAGGAAGGGGAACGCCAGCGGCGAAGACACACCGCGAGA
GACGGATCAAATCAAGCGAGCATTCAGTCTTTTTAAGCGCATACGGCCCC
GTGGCAATCAAGGTATCCACTTACAGTGCCCCTTCTCGTCCAAACACAGG
ACCTTCGTCGGTGCCAATTGAAAGTGATGAAGCGCGCCCGGGAGCCGGAA
GACAATAACGGCACTGTCCATGGAAGTCGCGATCGGGGTATGTAATGTGA
TGGCACGCACCAGTACATGAAGAGACGTGGGAATGAAGTTGCACTGCGTT
CTACAACAAGTCGAGGGGTATTGAGACGGTGCTAGTGTGGACGGTGTCGC
CGGGAGGAACCGCAAAGTCTGCCAAAGCGGCCTCCCATCACTGACTTTCG
ACGACACATCCCTCTCTCTTTACACATGCCCTCCCAGCCTCTACGTCCTC
AGTGGCACCGAAAGCATCCTCTCTACGACCGAAATGTCCCTATTTGGACA
CCGTCAACAGGACTTACCTGGACTTTGACTTCGAAAAGCTTTGCTCCGTC
TCTCTTTCAAACATGAACATCTACGTATGCTTGGTCTGCGGCAAATTTTT
CCAGGGCCGAGGCCCTCGCACGCACGCCCATACCCACTCACTTCACGACT
TCCACCACGTCTTTATGAACCTGCACACGGCTCGTATTTTTTGCTTACCC
GACAACTACGAGGTCCTGGACTCCTCCTTGGACGACATCAAGCGCGCCCT
TTTTCCCTCCTTCACCCCTGCTGCCATCGCGCAGCTTGACACGAACACGA
CCCTCGTCCGGGACGTGCACGGCGTTTCCTACCTCCCGGGCTTTGTGGGC
CTCAACAACTTGAAGAGCACGGACTATGTGAACGTCGTCCTACAGGCTCT
GGGTCATGTGACCCCTCTCCGGAACTACTTCTTGCAGCCCTCCTTGTACG
AAGCTGGGGCGAAGAACCAGTTGGTGTTGCGCTTTGGGGAAGTGATGCGT
AAATTGTGGAGCCAAGACAATTTCAAAAGCACTGTCTCGCCCCACGATTT
TCTGCAAGAAGTGGTGAGCGCGAGCGGGAAGCGGTTCGCGATCGGGAAGC
CGGGGGAGGCGGTGGATTTCTTGTCCTGGCTCCTGCACCAGCTGCACGTG
GGGCTGGGGGGAACGATGCCGATGGTGGGCTGCAAGGGTGGGGAGGGAGG
GAAGAAGAAGAAGGCGGGGAGGAGGAGCGTGGTTCTGGACTGCTTTCAAG
GGGAAATCCGTGTCCGGACTCTGACTAAGGCGCGGAAGGATTGGACGGTG
GGGGGGCGGGGGGAGGAGGAAGGGGATGAGGACGACGGCACCGGGAGGGG
TAACGGGGCGCAGGAAGAGAAGGAGGGGGAGCCGGCGGGGGAATGGGCCG
TGAGCGAGACGCGGTCGCCCTTTTTGTTCCTGACGGTGGATATCCCCCAG
ACGCCCCTCTTCAAGGACTCACAGGGGGGGGTCATCATCCCTCACATACC
GCTCTACAGCGTGCTGGACAAGTTCAACGGCGTCAAAGTGGTGGACGCGG
TCAAGGCGGGCGTGCACACGCGGAAGCAGTATTGGATCACGCGCCTCCCT
CAGTACCTGATTCTCTCCCTGGCCCGGCTCACGCGCAACCATTTCTTCGT
GGAGAAGAACCCGACCATCGTCAACTTCCCCGTGAAGAATTTGGAGCTCA
GGGATTATTTCTTGCCGGAGGCTGGCCTGCCCACAGAGGAAGGCCTGAAG
ACGATGACCGTGGGGGAATTGAAAGGCTTCGTACAGGCGCATGGGGGGGG
CGACGCGAAGGAGGCCGTGGAGCGGGAGGATCTGGAGGAGCAAGCGCGTG
CGGTGCTCAACGAGGTGGCGGGGACCAAGTACGACCTGGTGGCCAACGTA
GTGCACGACTCGCCCCCCGGGCAGGAGAAGAAGGAAGCGGCGCGGGGGGA
GGCCACGCCGCCAGGCACCTACCGGGTGCACGTGTTTAACCGGGCCTCGG
ACCAGTGGTACGAGATCCAGGACTTGCACGTCCAGGAGACCCTCCCGCAA
CTCATCACCATCAGTGAGAGTTGTGTGTTGATATACGAGAAGAAAGGGGT
GGAACGAGCGCGAGGCTGCGGAAGGGGCCACTGAGGGAACAGGAAGAAGG
GCCGCGCCCGATAGGGTGTGGGGCGTAAGGAAGGGAGAGAAGCAACAAGT
AGTCTAGAGTATGACTATCTCC

Coding sequence (CDS) from alignment at CM002457.1:395539..397760-

>rna1342 ID=rna1342|Name=rna1342|organism=Nannochloropsis gaditana|type=CDS|length=3516bp|location=Sequence derived from alignment at CM002457.1:395539..397760- (Nannochloropsis gaditana)
CCTCTACGTCCTCAGTGGCACCGAAAGCATCCTCTCTACGACCGAAATGT
CCCTATTTGGACACCGTCAACAGGACTTACCTGGACTTTGACTTCGAAAA
GCTTTGCTCCGTCTCTCTTTCAAACATGAACATCTACGTATGCTTGGTCT
GCGGCAAATTTTTCCAGGGCCGAGGCCCTCGCACGCACGCCCATACCCAC
TCACTTCACGACTTCCACCACGTCTTTATGAACCTGCACACGGCTCGTAT
TTTTTGCTTACCCGACAACTACGAGGTCCTGGACTCCTCCTTGGACGACA
TCAAGCGCGCCCTTTTTCCCTCCTTCACCCCTGCTGCCATCGCGCAGCTT
GACACGAACACGACCCTCGTCCGGGACGTGCACGGCGTTTCCTACCTCCC
GGGCTTTGTGGGCCTCAACAACTTGAAGAGCACGGACTATGTGAACGTCG
TCCTACAGGCTCTGGGTCATGTGACCCCTCTCCGGAACTACTTCTTGCAG
CCCTCCTTGTACGAAGCTGGGGCGAAGAACCAGTTGGTGTTGCGCTTTGG
GGAAGTGATGCGTAAATTGTGGAGCCAAGACAATTTCAAAAGCACTGTCT
CGCCCCACGATTTTCTGCAAGAAGTGGTGAGCGCGAGCGGGAAGCGGTTC
GCGATCGGGAAGCCGGGGGAGGCGGTGGATTTCTTGTCCTGGCTCCTGCA
CCAGCTGCACGTGGGGCTGGGGGGAACGATGCCGATGGTGGGCTGCAAGG
GTGGGGAGGGAGGGAAGAAGAAGAAGGCGGGGAGGAGGAGCGTGGTTCTG
GACTGCTTTCAAGGGGAAATCCGTGTCCGGACTCTGACTAAGGCGCGGAA
GGATTGGACGGTGGGGGGGCGGGGGGAGGAGGAAGGGGATGAGGACGACG
GCACCGGGAGGGGTAACGGGGCGCAGGAAGAGAAGGAGGGGGAGCCGGCG
GGGGAATGGGCCGTGAGCGAGACGCGGTCGCCCTTTTTGTTCCTGACGGT
GGATATCCCCCAGACGCCCCTCTTCAAGGACTCACAGGGGGGGGTCATCA
TCCCTCACATACCGCTCTACAGCGTGCTGGACAAGTTCAACGGCGTCAAA
GTGGTGGACGCGGTCAAGGCGGGCGTGCACACGCGGAAGCAGTATTGGAT
CACGCGCCTCCCTCAGTACCTGATTCTCTCCCTGGCCCGGCTCACGCGCA
ACCATTTCTTCGTGGAGAAGAACCCGACCATCGTCAACTTCCCCGTGAAG
AATTTGGAGCTCAGGGATTATTTCTTGCCGGAGGCTGGCCTGCCCACAGA
GGAAGGCCTGAAGACGATGACCGTGGGGGAATTGAAAGGCTTCGTACAGG
CGCATGGGGGGGGCGACGCGAAGGAGGCCGTGGAGCGGGAGGATCTGGAG
GAGCAAGCGCGTGCGGTGCTCAACGAGGTGGCGGGGACCAAGTACGACCT
GGTGGCCAACGTAGTGCACGACTCGCCCCCCGGGCAGGAGAAGAAGGAAG
CGGCGCGGGGGGAGGCCACGCCGCCAGGCACCTACCGGGTGCACGTGTTT
AACCGGGCCTCGGACCAGTGGTACGAGATCCAGGACTTGCACGTCCAGGA
GACCCTCCCGCAACTCATCACCATCAGTGAGAGTTGTGTGTTGATATACG
AGAAGAAAGGGGTGGAACGAGCGCGAGGCTGCGGAAGGGGCCACTGAATG
AAGCGCGCCCGGGAGCCGGAAGACAATAACGGCACTGTCCATGGAAGTCG
CGATCGGGCCTCTACGTCCTCAGTGGCACCGAAAGCATCCTCTCTACGAC
CGAAATGTCCCTATTTGGACACCGTCAACAGGACTTACCTGGACTTTGAC
TTCGAAAAGCTTTGCTCCGTCTCTCTTTCAAACATGAACATCTACGTATG
CTTGGTCTGCGGCAAATTTTTCCAGGGCCGAGGCCCTCGCACGCACGCCC
ATACCCACTCACTTCACGACTTCCACCACGTCTTTATGAACCTGCACACG
GCTCGTATTTTTTGCTTACCCGACAACTACGAGGTCCTGGACTCCTCCTT
GGACGACATCAAGCGCGCCCTTTTTCCCTCCTTCACCCCTGCTGCCATCG
CGCAGCTTGACACGAACACGACCCTCGTCCGGGACGTGCACGGCGTTTCC
TACCTCCCGGGCTTTGTGGGCCTCAACAACTTGAAGAGCACGGACTATGT
GAACGTCGTCCTACAGGCTCTGGGTCATGTGACCCCTCTCCGGAACTACT
TCTTGCAGCCCTCCTTGTACGAAGCTGGGGCGAAGAACCAGTTGGTGTTG
CGCTTTGGGGAAGTGATGCGTAAATTGTGGAGCCAAGACAATTTCAAAAG
CACTGTCTCGCCCCACGATTTTCTGCAAGAAGTGGTGAGCGCGAGCGGGA
AGCGGTTCGCGATCGGGAAGCCGGGGGAGGCGGTGGATTTCTTGTCCTGG
CTCCTGCACCAGCTGCACGTGGGGCTGGGGGGAACGATGCCGATGGTGGG
CTGCAAGGGTGGGGAGGGAGGGAAGAAGAAGAAGGCGGGGAGGAGGAGCG
TGGTTCTGGACTGCTTTCAAGGGGAAATCCGTGTCCGGACTCTGACTAAG
GCGCGGAAGGATTGGACGGTGGGGGGGCGGGGGGAGGAGGAAGGGGATGA
GGACGACGGCACCGGGAGGGGTAACGGGGCGCAGGAAGAGAAGGAGGGGG
AGCCGGCGGGGGAATGGGCCGTGAGCGAGACGCGGTCGCCCTTTTTGTTC
CTGACGGTGGATATCCCCCAGACGCCCCTCTTCAAGGACTCACAGGGGGG
GGTCATCATCCCTCACATACCGCTCTACAGCGTGCTGGACAAGTTCAACG
GCGTCAAAGTGGTGGACGCGGTCAAGGCGGGCGTGCACACGCGGAAGCAG
TATTGGATCACGCGCCTCCCTCAGTACCTGATTCTCTCCCTGGCCCGGCT
CACGCGCAACCATTTCTTCGTGGAGAAGAACCCGACCATCGTCAACTTCC
CCGTGAAGAATTTGGAGCTCAGGGATTATTTCTTGCCGGAGGCTGGCCTG
CCCACAGAGGAAGGCCTGAAGACGATGACCGTGGGGGAATTGAAAGGCTT
CGTACAGGCGCATGGGGGGGGCGACGCGAAGGAGGCCGTGGAGCGGGAGG
ATCTGGAGGAGCAAGCGCGTGCGGTGCTCAACGAGGTGGCGGGGACCAAG
TACGACCTGGTGGCCAACGTAGTGCACGACTCGCCCCCCGGGCAGGAGAA
GAAGGAAGCGGCGCGGGGGGAGGCCACGCCGCCAGGCACCTACCGGGTGC
ACGTGTTTAACCGGGCCTCGGACCAGTGGTACGAGATCCAGGACTTGCAC
GTCCAGGAGACCCTCCCGCAACTCATCACCATCAGTGAGAGTTGTGTGTT
GATATACGAGAAGAAAGGGGTGGAACGAGCGCGAGGCTGCGGAAGGGGCC
ACTGAATGAAGCGCGCCCGGGAGCCGGAAGACAATAACGGCACTGTCCAT
GGAAGTCGCGATCGGG

Synonyms

Publications