rna127, rna127 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna127
Unique Name	rna127
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1774
Alignment location	CM002455.1:329815..331743 +

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Properties


Property Name	Value
Product	Cell differentiation, Rcd1-like protein
Orig transcript id	gnl\|cribi\|Naga_100033g52.8423.mrna
Orig protein id	gnl\|cribi\|Naga_100033g52.8423
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:329815..331743 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100033g52	gene121	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna127	rna127-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30584.1	cds127	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:329815..331743+
coding sequence from alignment at CM002455.1:329815..331743+

mRNA sequence

>rna127 ID=rna127|Name=rna127|organism=Nannochloropsis gaditana|type=mRNA|length=1774bp
TCTGGCTGTTATTGATGACGAAACTGTCATAATGGTGTATCGTATGTGCA
TATCGCGGGCTTCGCCCTGATACCGGCAACAGATTCTCTCCCATGGCCCT
CCCAGACGCCACTAGATCACTGATACCCCCTTCATCACCAACATTACATG
CTCAGATGCCATATTGCTAATGCTGGGCATGAATCCTCTGAATACTTTGG
GTGCAGGTACGTGGAAAACATCTATGCATGTTTGTTTGTGTGGACACCAA
CATGTCTTGCTAGTAGCAACGACAGAAGTGTAAAATACCAGCACCATGGC
GGACATCGCGGGAACAGAGGACAGGCATATGTCTATTCTCCACACCAACG
ACCATATTATTTTTGTGTGGGATCTGTACTCCTGTGTTCTGCCACACCAA
AATGCGTAGTACGGGCCTTACCTAAGCGTGCGCAACCGCATCCATTCTCT
CACATCGCTTTCATTCCCAATGCGAACTACCAATTGCAACGTACGCCTAG
TGAATGTCAGTGTTCCTGCACAGTCGAATAGCCTTGCAGGAGGAGGTGGA
CAGGCGTATGAGGAATTGATCCCACTGGTGTTGCAGCTGTCGGAGCTGAG
TAAGGTAGAGTTGGGGATGAAGAGCGAAGTCGTAGAATCCCTGGGGCAAG
CACGTAGGTTAGAAAATGCCATAAAGCACAGCGTGGAATGGACATGCTTC
ACTCAAACGAGCAGGCCCGGGCAATCAAGGCGCACGCCAACTAGGCGAGC
GCGAGGGAGTGAAGTAGAAGAAGGGGGAGAGGGGCCGAGTTGGGATCCCT
GAATCATCCCCCACGTCCTCTCTCTGCCCTTTTCTCACCCGTCCTTGTAA
CTCCCTCCCTCTTTTCTCTGCATCTCACTTCCGTCTCCTTCCCTGCTTCC
CGGCACGCAGCGGGAGACGGCGTTGATGGAGCTGAGTAAGAAGAGGGAAG
TCTACCCGGACCTGGCGCCTGTCCTGTGGCACTCGGTCGGGACCATGGCC
GCGCTCCTGCAAGAGATCATCGCCATCTACCCCATGCTCACTCCACCAAC
CTTGACGGCGCAGGCCAGCAACCGAGTGTGCAACGCCTTGGCGCTCCTGC
AGTGCGTGGCCTCCCACACGGAGACCCGGGGCCTCTTCCTTCAAGCACAC
ATCCCCATGTACCTCTACCCGTTCCTGAACACGGTCATGAGCAAGAGCCG
ACCCTTCGAATACCTGCGCCTGACCTCTTTAGGCGTGATTGGCGCACTCG
TCAAGGTGGACGACGCGGAAGTAATCTCCTTCCTCCTCCAAACCGAGATC
ATTCCGCTCTGTCTGCGCATCATGGAGACCGGGAACGAGCTTTCCAAAAC
CGTCGCCACCTTCATCGTGCAAAAAGTGCTATTGGATGAGATGGGTCTGA
ACTACATTTGTGCCACAGCCGAGCGTTTTTTCGCAGTATCCACCGTCTTG
AGCAATATGGTTCAGGCTTTGATCGAAGTGCCCTCCGTCCGCCTGCTAAA
GCACATCGTCCGATGCTACCTGCGCCTGTCTGAGAACCCTCGTGCCCGCG
ATGCCCTCCGCCAGTGCTTGCCTGACGCGTTGAGGAGCGATCAGACGTTT
TCTCAATGCCTGAAGGACGACGTGACGATAAATCGGTGGCTGGCGAATTT
GCTGTACAACATAACTGAGGGAGCGTGAGAGGAAATATCTTCGATTTGTA
AATGGAATAAAGCACTCCAAGGCTCAATACAGGATAAAAAGAAAAATTCA
TAAATTGTGGGTGTCAAAAGCTTG

protein sequence of rna127

>rna127-protein ID=rna127-protein|Name=rna127|organism=Nannochloropsis gaditana|type=polypeptide|length=300bp
MRTTNCNVRLVNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETAL
MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNR
VCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLT
SLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQK
VLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLR
LSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA

mRNA from alignment at CM002455.1:329815..331743+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna127 ID=rna127|Name=rna127|organism=Nannochloropsis gaditana|type=mRNA|length=1929bp|location=Sequence derived from alignment at CM002455.1:329815..331743+ (Nannochloropsis gaditana)
AATGGTGTATCGTATGTGCATATCGCGGGCTTCGCCCTGATACCGGCAAC
AGATTCTCTCCCATGGCCCTCCCAGACGCCACTAGATCACTGATACCCCC
TTCATCACCAACATTACATGCTCAGATGCCATATTGCTAATGCTGGGCAT
GAATCCTCTGAATACTTTGGGTGCAGGTACGTGGAAAACATCTATGCATG
TTTGTTTGTGTGGACACCAACATGTCTTGCTAGTAGCAACGACAGAAGTG
TAAAATACCAGCACCATGGCGGACATCGCGGGAACAGAGGACAGGCATAT
GTCTATTCTCCACACCAACGACCATATTATTTTTGTGTGGGATCTGTACT
CCTGTGTTCTGCCACACCAAAATGCGTAGTACGGGCCTTACCTAAGCGTG
CGCAACCGCATCCATTCTCTCACATCGCTTTCATTCCCAATGCGAACTAC
CAATTGCAACGTACGCCTAGTGAATGTCAGTGTTCCTGCACAGTCGAATA
GccttgcaggaggaggtggacaggCGTATGAGGAATTGATCCCACTGGTG
TTGCAGCTGTCGGAGCTGAGTAAGGTAGAGTTGGGGATGAAGAGCGAAGT
CGTAGAATCCCTGGGGCAAGCACGTAGGTTAGAAAATGCCATAAAGCACA
GCGTGGAATGGACATGCTTCACTCAAACGAGCAGGCCCGGGCAATCAAGG
CGCACGCCAACTAGGCGAGCGCGAGGGAGTGAAgtagaagaagggggaga
ggggccgaGTTGGGATCCCTGAATCatcccccacgtcctctctctgccct
ttTCTCACCCGTCCTTGtaactccctccctcttttctctgcATCTCactt
ccgtctccttccctgcttcccggCACGCAGCGGGAGACGGCGTTGATGGA
GCTGAGTAAGAAGAGGGAAGTCTACCCGGACCTGGCGCCTGTCCTGTGGC
ACTCGGTCGGGACCATGGCCGCGCTCCTGCAAGAGATCATCGCCATCTAC
CCCATGCTCACTCCACCAACCTTGACGGCGCAGGCCAGCAACCGAGTGTG
CAACGCCTTGGCGCTCCTGCAGTGCGTGGCCTCCCACACGGAGACCCGgg
gcctcttccttcaaggTTGGttggggcgaggggagggggcgcggaggtag
gaagggagcggagagAGGCGTGCAGTCTTTGTGTTCAGCATTTGGGCTCA
TGCACTTGTGTGGGTGCGGTGTTCGAGGGCACAGGCGAGCTACCAGAGCG
ATGGCTCCTATCTCTGACGTTtgtgtccttctcttcctcccggcctccaG
CACACATCCCCATGTACCTCTACCCGTTCCTGAACACGGTCATGAGCAAG
AGCCGACCCTTCGAATACCTGCGCCTGACCTCTTTAGGCGTGATTGGCGC
ACTCGTCAAGGTGGACGACGCGGAAGtaatctccttcctcctccaaaccG
AGATCATTCCGCTCTGTCTGCGCATCATGGAGACCGGGAACGAGCTTTCC
AAAACCGTCGCCACCTTCATCGTGCAAAAAGTGCTATTGGATGAGATGGG
TCTGAACTACATTTGTGCCACAGCCGAGCGTTTTTTCGCAGTATCCACCG
TCTTGAGCAATATGGTTCAGGCTTTGATCGAAGTGCCCTCCGTCCGCCTG
CTAAAGCACATCGTCCGATGCTACCTGCGCCTGTCTGAGAACCCTCGTGC
CCGCGATGCCCTCCGCCAGTGCTTGCCTGACGCGTTGAGGAGCGATCAGA
CGTTTTCTCAATGCCTGAAGGACGACGTGACGATAAATCGGTGGCTGGCG
AATTTGCTGTACAACATAACTGAGGGAGCGTGAGAGGAAATATCTTCGAT
TTGTAAATGGAATAAAGCACTCCAAGGCTCAATACAGgataaaaagaaaa
attcATAAATTGTGGGTGTCAAAAGCTTG

Coding sequence (CDS) from alignment at CM002455.1:329815..331743+

>rna127 ID=rna127|Name=rna127|organism=Nannochloropsis gaditana|type=CDS|length=2709bp|location=Sequence derived from alignment at CM002455.1:329815..331743+ (Nannochloropsis gaditana)
ATGCGAACTACCAATTGCAACGTACGCCTAGTGAATGTCAGTGTTCCTGC
ACAGTCGAATAGccttgcaggaggaggtggacaggCGTATGAGGAATTGA
TCCCACTGGTGTTGCAGCTGTCGGAGCTGAGTAAGCGGGAGACGGCGTTG
ATGGAGCTGAGTAAGAAGAGGGAAGTCTACCCGGACCTGGCGCCTGTCCT
GTGGCACTCGGTCGGGACCATGGCCGCGCTCCTGCAAGAGATCATCGCCA
TCTACCCCATGCTCACTCCACCAACCTTGACGGCGCAGGCCAGCAACCGA
GTGTGCAACGCCTTGGCGCTCCTGCAGTGCGTGGCCTCCCACACGGAGAC
CCGgggcctcttccttcaagCACACATCCCCATGTACCTCTACCCGTTCC
TGAACACGGTCATGAGCAAGAGCCGACCCTTCGAATACCTGCGCCTGACC
TCTTTAGGCGTGATTGGCGCACTCGTCAAGGTGGACGACGCGGAAGtaat
ctccttcctcctccaaaccGAGATCATTCCGCTCTGTCTGCGCATCATGG
AGACCGGGAACGAGCTTTCCAAAACCGTCGCCACCTTCATCGTGCAAAAA
GTGCTATTGGATGAGATGGGTCTGAACTACATTTGTGCCACAGCCGAGCG
TTTTTTCGCAGTATCCACCGTCTTGAGCAATATGGTTCAGGCTTTGATCG
AAGTGCCCTCCGTCCGCCTGCTAAAGCACATCGTCCGATGCTACCTGCGC
CTGTCTGAGAACCCTCGTGCCCGCGATGCCCTCCGCCAGTGCTTGCCTGA
CGCGTTGAGGAGCGATCAGACGTTTTCTCAATGCCTGAAGGACGACGTGA
CGATAAATCGGTGGCTGGCGAATTTGCTGTACAACATAACTGAGGGAGCG
TGAATGCGAACTACCAATTGCAACGTACGCCTAGTGAATGTCAGTGTTCC
TGCACAGTCGAATAGccttgcaggaggaggtggacaggCGTATGAGGAAT
TGATCCCACTGGTGTTGCAGCTGTCGGAGCTGAGTAAGCGGGAGACGGCG
TTGATGGAGCTGAGTAAGAAGAGGGAAGTCTACCCGGACCTGGCGCCTGT
CCTGTGGCACTCGGTCGGGACCATGGCCGCGCTCCTGCAAGAGATCATCG
CCATCTACCCCATGCTCACTCCACCAACCTTGACGGCGCAGGCCAGCAAC
CGAGTGTGCAACGCCTTGGCGCTCCTGCAGTGCGTGGCCTCCCACACGGA
GACCCGgggcctcttccttcaagCACACATCCCCATGTACCTCTACCCGT
TCCTGAACACGGTCATGAGCAAGAGCCGACCCTTCGAATACCTGCGCCTG
ACCTCTTTAGGCGTGATTGGCGCACTCGTCAAGGTGGACGACGCGGAAGt
aatctccttcctcctccaaaccGAGATCATTCCGCTCTGTCTGCGCATCA
TGGAGACCGGGAACGAGCTTTCCAAAACCGTCGCCACCTTCATCGTGCAA
AAAGTGCTATTGGATGAGATGGGTCTGAACTACATTTGTGCCACAGCCGA
GCGTTTTTTCGCAGTATCCACCGTCTTGAGCAATATGGTTCAGGCTTTGA
TCGAAGTGCCCTCCGTCCGCCTGCTAAAGCACATCGTCCGATGCTACCTG
CGCCTGTCTGAGAACCCTCGTGCCCGCGATGCCCTCCGCCAGTGCTTGCC
TGACGCGTTGAGGAGCGATCAGACGTTTTCTCAATGCCTGAAGGACGACG
TGACGATAAATCGGTGGCTGGCGAATTTGCTGTACAACATAACTGAGGGA
GCGTGAATGCGAACTACCAATTGCAACGTACGCCTAGTGAATGTCAGTGT
TCCTGCACAGTCGAATAGccttgcaggaggaggtggacaggCGTATGAGG
AATTGATCCCACTGGTGTTGCAGCTGTCGGAGCTGAGTAAGCGGGAGACG
GCGTTGATGGAGCTGAGTAAGAAGAGGGAAGTCTACCCGGACCTGGCGCC
TGTCCTGTGGCACTCGGTCGGGACCATGGCCGCGCTCCTGCAAGAGATCA
TCGCCATCTACCCCATGCTCACTCCACCAACCTTGACGGCGCAGGCCAGC
AACCGAGTGTGCAACGCCTTGGCGCTCCTGCAGTGCGTGGCCTCCCACAC
GGAGACCCGgggcctcttccttcaagCACACATCCCCATGTACCTCTACC
CGTTCCTGAACACGGTCATGAGCAAGAGCCGACCCTTCGAATACCTGCGC
CTGACCTCTTTAGGCGTGATTGGCGCACTCGTCAAGGTGGACGACGCGGA
AGtaatctccttcctcctccaaaccGAGATCATTCCGCTCTGTCTGCGCA
TCATGGAGACCGGGAACGAGCTTTCCAAAACCGTCGCCACCTTCATCGTG
CAAAAAGTGCTATTGGATGAGATGGGTCTGAACTACATTTGTGCCACAGC
CGAGCGTTTTTTCGCAGTATCCACCGTCTTGAGCAATATGGTTCAGGCTT
TGATCGAAGTGCCCTCCGTCCGCCTGCTAAAGCACATCGTCCGATGCTAC
CTGCGCCTGTCTGAGAACCCTCGTGCCCGCGATGCCCTCCGCCAGTGCTT
GCCTGACGCGTTGAGGAGCGATCAGACGTTTTCTCAATGCCTGAAGGACG
ACGTGACGATAAATCGGTGGCTGGCGAATTTGCTGTACAACATAACTGAG
GGAGCGTGA

Synonyms

Publications