EWM30584.1, cds127 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30584.1 vs. NCBI_GenBank
Match: gi|585113251|gb|EWM30584.1| (Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 614.379 bits (1583), Expect = 0.000e+0 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query: 1 MRTTNCNVRLVNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 300
MRTTNCNVRLVNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA
Sbjct: 1 MRTTNCNVRLVNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 300
BLAST of EWM30584.1 vs. NCBI_GenBank
Match: gi|585113250|gb|EWM30583.1| (Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0 Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 0
Query: 11 VNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 300
VNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA
Sbjct: 51 VNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 340
BLAST of EWM30584.1 vs. NCBI_GenBank
Match: gi|585113252|gb|EWM30585.1| (Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana] >gi|585113253|gb|EWM30586.1| Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 515.383 bits (1326), Expect = 0.000e+0 Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query: 51 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 300
MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA
Sbjct: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 250
BLAST of EWM30584.1 vs. NCBI_GenBank
Match: gi|676387631|ref|XP_009037094.1| (hypothetical protein AURANDRAFT_69805 [Aureococcus anophagefferens] >gi|323452501|gb|EGB08375.1| hypothetical protein AURANDRAFT_69805 [Aureococcus anophagefferens]) HSP 1 Score: 439.113 bits (1128), Expect = 4.337e-153 Identity = 211/278 (75.90%), Postives = 248/278 (89.21%), Query Frame = 0
Query: 26 GGQAYEELIPLVLQLS---ELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 300
G ++ EEL PLVLQL+ RE+AL+ELSKKRE + DLAP+LWHS GTM LLQEI++IYPML+PP LTA ASNRVCNALALLQCVASH ETRGLFL AH+P+YLYPFLNTV SK+RPFEYLRLTSLGV+GALVK+DD++VI+FLLQTEIIPLCLRIMETG+ELSKTVATFIVQK+LLD+MGLNY+CATAERF+AVSTVL+NMV L+E PS+RLLKHIVRCYLRLS+N RAR+ALRQCLP++LR D TF+ +KDD+T+ RWL++LLYNI+E A
Sbjct: 2 GEKSVEELYPLVLQLTVPDSPEHRESALLELSKKRETFTDLAPILWHSFGTMGTLLQEIVSIYPMLSPPNLTAHASNRVCNALALLQCVASHPETRGLFLNAHVPLYLYPFLNTV-SKNRPFEYLRLTSLGVVGALVKMDDSDVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDMGLNYVCATAERFYAVSTVLANMVLTLVEQPSIRLLKHIVRCYLRLSDNLRAREALRQCLPESLR-DHTFAGHIKDDLTVKRWLSSLLYNISEQA 277
BLAST of EWM30584.1 vs. NCBI_GenBank
Match: gi|922865202|gb|KOO32309.1| (cell differentiation protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 434.876 bits (1117), Expect = 1.434e-151 Identity = 213/286 (74.48%), Postives = 248/286 (86.71%), Query Frame = 0
Query: 14 SVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEG 299
+P +S S+ + +++ LVL+L+ +RETAL+ELSK+RE +PDLAP+LWHS GT++ALLQEI+AIYP+L+PP LTAQASNRVCNALALLQCVASH +TR LFL AHIP++LYPFLNTV SK+RPFEYLRLTSLGVIGALVKVDDA+VI+FLL TEIIPLCLRIMETG+ELSKTVATFIVQK+LLDE GL YICATAERF+AVSTVL+N+V AL+E PS RLLKHIVRC+LRLS+N RAR+ALRQCLPDALR D TFS CLKDDVT RW LL+NITE
Sbjct: 6 GLPGES-SMTPLNAEETDKIFVLVLELTNPDQRETALLELSKRRETFPDLAPILWHSFGTVSALLQEIVAIYPLLSPPALTAQASNRVCNALALLQCVASHPDTRTLFLNAHIPLFLYPFLNTV-SKTRPFEYLRLTSLGVIGALVKVDDADVINFLLSTEIIPLCLRIMETGSELSKTVATFIVQKILLDETGLAYICATAERFYAVSTVLANLVGALVEQPSGRLLKHIVRCFLRLSDNARAREALRQCLPDALR-DATFSACLKDDVTTKRWHTQLLFNITES 288
BLAST of EWM30584.1 vs. NCBI_GenBank
Match: gi|551563190|ref|XP_005768296.1| (hypothetical protein EMIHUDRAFT_414254 [Emiliania huxleyi CCMP1516] >gi|551616220|ref|XP_005788958.1| hypothetical protein EMIHUDRAFT_455065 [Emiliania huxleyi CCMP1516] >gi|485618974|gb|EOD15867.1| hypothetical protein EMIHUDRAFT_414254 [Emiliania huxleyi CCMP1516] >gi|485642452|gb|EOD36529.1| hypothetical protein EMIHUDRAFT_455065 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 431.795 bits (1109), Expect = 2.359e-150 Identity = 212/284 (74.65%), Postives = 244/284 (85.92%), Query Frame = 0
Query: 16 PAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEG 299
PAQ +A E++ LVL+L+ +RE AL+ELSK+RE + DLAP+LWHS GT++ALLQEI+AIYP+L+PP+LTAQASNRVCNALALLQCVASH ETR LFL AHIP++LYPFLNT+ SK+RPFEYLRLTSLGVIGALVKVDD +VI+FLL TEIIPLCLRIMETG+ELSKTVATFIVQK+LLDE GL YICATAERF+AVSTVL N+V +L++ PS RLLKHIVRCYLRLS+NPRAR+ALRQCLPD LR D TFS CLKDDVT RWL LL+NITE
Sbjct: 4 PAQRPDHTRPEDEA-EKIFHLVLELTNPEQREAALLELSKRRETFIDLAPILWHSFGTISALLQEIVAIYPLLSPPSLTAQASNRVCNALALLQCVASHPETRTLFLNAHIPLFLYPFLNTI-SKTRPFEYLRLTSLGVIGALVKVDDPDVINFLLSTEIIPLCLRIMETGSELSKTVATFIVQKILLDETGLAYICATAERFYAVSTVLGNLVGSLVDQPSARLLKHIVRCYLRLSDNPRAREALRQCLPDVLR-DATFSACLKDDVTTKRWLTQLLFNITES 284
BLAST of EWM30584.1 vs. NCBI_GenBank
Match: gi|301099265|ref|XP_002898724.1| (cell differentiation protein rcd1 [Phytophthora infestans T30-4] >gi|262104797|gb|EEY62849.1| cell differentiation protein rcd1 [Phytophthora infestans T30-4]) HSP 1 Score: 429.483 bits (1103), Expect = 4.995e-149 Identity = 208/281 (74.02%), Postives = 243/281 (86.48%), Query Frame = 0
Query: 20 NSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 300
NS +A E+L LVL+LS +RE+AL+ELSKKRE +P+LAP+LWHS GT+AALLQEI+AIYP+L+PP LTA ASNRVCNALALLQCVASH+ETR FL AHIP+YLYPFLNTV SK+RPFEYLRLTSLGVIGALVK+DD++VI+FLLQTEIIPLCLRIME G+ELSKTVATFIVQK+LLD+MGL YIC T ERF+AV TVLS MV L+EVP+ RLLKHI+RCYLRLS+NPRA++ALRQCLP+ALR + TF + LKDD T +RWLA LLYNI+ A
Sbjct: 20 NSFILDDMEAPEQLYSLVLELSSPEQRESALLELSKKREEFPELAPILWHSFGTVAALLQEIVAIYPLLSPPQLTAHASNRVCNALALLQCVASHSETRTHFLNAHIPLYLYPFLNTV-SKNRPFEYLRLTSLGVIGALVKIDDSDVINFLLQTEIIPLCLRIMEAGSELSKTVATFIVQKILLDDMGLTYICHTPERFYAVGTVLSKMVATLVEVPAPRLLKHIIRCYLRLSDNPRAKEALRQCLPEALR-NHTFDEALKDDATTSRWLAQLLYNISTDA 298
BLAST of EWM30584.1 vs. NCBI_GenBank
Match: gi|1214710739|gb|OWZ21802.1| (Cell differentiation protein rcd1 [Phytophthora megakarya]) HSP 1 Score: 424.861 bits (1091), Expect = 1.256e-147 Identity = 204/270 (75.56%), Postives = 237/270 (87.78%), Query Frame = 0
Query: 31 EELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 300
E+L LVL+LS +RE+AL+ELSKKRE +P+LAP+LWHS GT+AALLQEI+AIYP+L+PP LTA ASNRVCNALALLQCVASH ETR FL AHIP+YLYPFLNTV SK+RPFEYLRLTSLGVIGALVK+DD++VI+FLLQTEIIPLCLRIME G+ELSKTVATFIVQK+LLD+MGL YIC T ERF+AV TVLS MV L+E P+ RLLKHI+RCYLRLS+NPRA++ALRQCLP+ALR + TF + LKDD T +RWLA LLYNI+ A
Sbjct: 5 EQLYALVLELSSPEQRESALLELSKKREEFPELAPILWHSFGTVAALLQEIVAIYPLLSPPQLTAHASNRVCNALALLQCVASHAETRTHFLNAHIPLYLYPFLNTV-SKNRPFEYLRLTSLGVIGALVKIDDSDVINFLLQTEIIPLCLRIMEAGSELSKTVATFIVQKILLDDMGLTYICHTPERFYAVGTVLSKMVATLVEAPAPRLLKHIIRCYLRLSDNPRAKEALRQCLPEALR-NHTFDEGLKDDATTSRWLAQLLYNISTDA 272
BLAST of EWM30584.1 vs. NCBI_GenBank
Match: gi|695418130|ref|XP_009527321.1| (hypothetical protein PHYSODRAFT_559218 [Phytophthora sojae] >gi|348678446|gb|EGZ18263.1| hypothetical protein PHYSODRAFT_559218 [Phytophthora sojae]) HSP 1 Score: 423.705 bits (1088), Expect = 3.064e-147 Identity = 203/270 (75.19%), Postives = 238/270 (88.15%), Query Frame = 0
Query: 31 EELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 300
E+L LVL+LS +RE+AL+ELSKKRE +P+LAP+LWHS GT+AALLQEI+AIYP+L+PP LTA ASNRVCNALALLQCVASH+ETR FL AHIP+YLYPFLNTV SK+RPFEYLRLTSLGVIGALVK+DD++VI+FLLQTEIIPLCLRIME G+ELSKTVATFIVQK+LLD+MGL YIC T ERF+AV TVLS MV L+E P+ RLLKHI+RCYLRLS+NPRA++ALRQCLP+ALR + TF + LK+D T +RWLA LLYNI+ A
Sbjct: 3 EQLYALVLELSSPEQRESALLELSKKREEFPELAPILWHSFGTVAALLQEIVAIYPLLSPPQLTAHASNRVCNALALLQCVASHSETRTHFLNAHIPLYLYPFLNTV-SKNRPFEYLRLTSLGVIGALVKIDDSDVINFLLQTEIIPLCLRIMEAGSELSKTVATFIVQKILLDDMGLTYICHTPERFYAVGTVLSKMVAVLVEAPAPRLLKHIIRCYLRLSDNPRAKEALRQCLPEALR-NHTFDEALKEDATTSRWLAQLLYNISTDA 270
BLAST of EWM30584.1 vs. NCBI_GenBank
Match: gi|298710510|emb|CBJ25574.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 426.402 bits (1095), Expect = 3.144e-147 Identity = 207/264 (78.41%), Postives = 238/264 (90.15%), Query Frame = 0
Query: 36 LVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEG 299
LVLQL+ +RE AL+ELSKKRE + DLAP+LWHS GT++ALLQE++AIYP+L+PPTLT ASNRVCNALALLQCVASH ETR LFL+AHIP+YLYPFLNTV SK+RPFEYLRLTSLGVIGALVK+DDAEVI+FLLQTEIIPLCLRIMETG+ELSKTVATFIVQK+LLDE GL YIC TAERF+AVSTVL NMV L+E PSVRLLKH+VRCYLRLS+N RAR+ALRQCLPDALR++ TF+ LKDDV++ RWL +LL+N+TE
Sbjct: 71 LVLQLTNPDQREGALLELSKKREAFTDLAPILWHSYGTISALLQEMVAIYPLLSPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTV-SKNRPFEYLRLTSLGVIGALVKMDDAEVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDEHGLEYICQTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRNN-TFTNVLKDDVSVKRWLTSLLFNLTES 332 The following BLAST results are available for this feature:
BLAST of EWM30584.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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