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Properties
| Property Name | Value |
|---|
| Product | Cell differentiation, Rcd1-like protein |
| Orig transcript id | gnl|cribi|Naga_100033g52.8425.mrna |
| Orig protein id | gnl|cribi|Naga_100033g52.8425 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 4; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:329785..331743 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna126 ID=rna126|Name=rna126|organism=Nannochloropsis gaditana|type=mRNA|length=1487bp
TCGTGGCTCTGGCTGTTATTGATGACGAAACTGTCATAATGGTGTATCGT
ATGTGCATATCGCGGGCTTCGCCCTGATACCGGCAACAGATTCTCTCCCA
TGGCCCTCCCAGACGCCACTAGATCACTGATACCCCCTTCATCACCAACA
TTACATGCTCAGATGCCATATTGCTAATGCTGGGCATGAATCCTCTGAAT
ACTTTGGGTGCAGTGAATGTCAGTGTTCCTGCACAGTCGAATAGCCTTGC
AGGAGGAGGTGGACAGGCGTATGAGGAATTGATCCCACTGGTGTTGCAGC
TGTCGGAGCTGAGTAAGGTAGAGTTGGGGATGAAGAGCGAAGTCGTAGAA
TCCCTGGGGCAAGCACGTAGGTTAGAAAATGCCATAAAGCACAGCGTGGA
ATGGACATGCTTCACTCAAACGAGCAGGCCCGGGCAATCAAGGCGCACGC
CAACTAGGCGAGCGCGAGGGAGTGAAGTAGAAGAAGGGGGAGAGGGGCCG
AGTTGGGATCCCTGAATCATCCCCCACGTCCTCTCTCTGCCCTTTTCTCA
CCCGTCCTTGTAACTCCCTCCCTCTTTTCTCTGCATCTCACTTCCGTCTC
CTTCCCTGCTTCCCGGCACGCAGCGGGAGACGGCGTTGATGGAGCTGAGT
AAGAAGAGGGAAGTCTACCCGGACCTGGCGCCTGTCCTGTGGCACTCGGT
CGGGACCATGGCCGCGCTCCTGCAAGAGATCATCGCCATCTACCCCATGC
TCACTCCACCAACCTTGACGGCGCAGGCCAGCAACCGAGTGTGCAACGCC
TTGGCGCTCCTGCAGTGCGTGGCCTCCCACACGGAGACCCGGGGCCTCTT
CCTTCAAGCACACATCCCCATGTACCTCTACCCGTTCCTGAACACGGTCA
TGAGCAAGAGCCGACCCTTCGAATACCTGCGCCTGACCTCTTTAGGCGTG
ATTGGCGCACTCGTCAAGGTGGACGACGCGGAAGTAATCTCCTTCCTCCT
CCAAACCGAGATCATTCCGCTCTGTCTGCGCATCATGGAGACCGGGAACG
AGCTTTCCAAAACCGTCGCCACCTTCATCGTGCAAAAAGTGCTATTGGAT
GAGATGGGTCTGAACTACATTTGTGCCACAGCCGAGCGTTTTTTCGCAGT
ATCCACCGTCTTGAGCAATATGGTTCAGGCTTTGATCGAAGTGCCCTCCG
TCCGCCTGCTAAAGCACATCGTCCGATGCTACCTGCGCCTGTCTGAGAAC
CCTCGTGCCCGCGATGCCCTCCGCCAGTGCTTGCCTGACGCGTTGAGGAG
CGATCAGACGTTTTCTCAATGCCTGAAGGACGACGTGACGATAAATCGGT
GGCTGGCGAATTTGCTGTACAACATAACTGAGGGAGCGTGAGAGGAAATA
TCTTCGATTTGTAAATGGAATAAAGCACTCCAAGGCTCAATACAGGATAA
AAAGAAAAATTCATAAATTGTGGGTGTCAAAAGCTTG back to topprotein sequence of rna126 >rna126-protein ID=rna126-protein|Name=rna126|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNR
VCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLT
SLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQK
VLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLR
LSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA back to topmRNA from alignment at CM002455.1:329785..331743+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna126 ID=rna126|Name=rna126|organism=Nannochloropsis gaditana|type=mRNA|length=1959bp|location=Sequence derived from alignment at CM002455.1:329785..331743+ (Nannochloropsis gaditana)
TCTGGCTGTTATTGATGACGAAACTGTCATAATGGTGTATCGTATGTGCA
TATCGCGGGCTTCGCCCTGATACCGGCAACAGATTCTCTCCCATGGCCCT
CCCAGACGCCACTAGATCACTGATACCCCCTTCATCACCAACATTACATG
CTCAGATGCCATATTGCTAATGCTGGGCATGAATCCTCTGAATACTTTGG
GTGCAGGTACGTGGAAAACATCTATGCATGTTTGTTTGTGTGGACACCAA
CATGTCTTGCTAGTAGCAACGACAGAAGTGTAAAATACCAGCACCATGGC
GGACATCGCGGGAACAGAGGACAGGCATATGTCTATTCTCCACACCAACG
ACCATATTATTTTTGTGTGGGATCTGTACTCCTGTGTTCTGCCACACCAA
AATGCGTAGTACGGGCCTTACCTAAGCGTGCGCAACCGCATCCATTCTCT
CACATCGCTTTCATTCCCAATGCGAACTACCAATTGCAACGTACGCCTAG
TGAATGTCAGTGTTCCTGCACAGTCGAATAGccttgcaggaggaggtgga
caggCGTATGAGGAATTGATCCCACTGGTGTTGCAGCTGTCGGAGCTGAG
TAAGGTAGAGTTGGGGATGAAGAGCGAAGTCGTAGAATCCCTGGGGCAAG
CACGTAGGTTAGAAAATGCCATAAAGCACAGCGTGGAATGGACATGCTTC
ACTCAAACGAGCAGGCCCGGGCAATCAAGGCGCACGCCAACTAGGCGAGC
GCGAGGGAGTGAAgtagaagaagggggagaggggccgaGTTGGGATCCCT
GAATCatcccccacgtcctctctctgccctttTCTCACCCGTCCTTGtaa
ctccctccctcttttctctgcATCTCacttccgtctccttccctgcttcc
cggCACGCAGCGGGAGACGGCGTTGATGGAGCTGAGTAAGAAGAGGGAAG
TCTACCCGGACCTGGCGCCTGTCCTGTGGCACTCGGTCGGGACCATGGCC
GCGCTCCTGCAAGAGATCATCGCCATCTACCCCATGCTCACTCCACCAAC
CTTGACGGCGCAGGCCAGCAACCGAGTGTGCAACGCCTTGGCGCTCCTGC
AGTGCGTGGCCTCCCACACGGAGACCCGgggcctcttccttcaaggTTGG
ttggggcgaggggagggggcgcggaggtaggaagggagcggagagAGGCG
TGCAGTCTTTGTGTTCAGCATTTGGGCTCATGCACTTGTGTGGGTGCGGT
GTTCGAGGGCACAGGCGAGCTACCAGAGCGATGGCTCCTATCTCTGACGT
TtgtgtccttctcttcctcccggcctccaGCACACATCCCCATGTACCTC
TACCCGTTCCTGAACACGGTCATGAGCAAGAGCCGACCCTTCGAATACCT
GCGCCTGACCTCTTTAGGCGTGATTGGCGCACTCGTCAAGGTGGACGACG
CGGAAGtaatctccttcctcctccaaaccGAGATCATTCCGCTCTGTCTG
CGCATCATGGAGACCGGGAACGAGCTTTCCAAAACCGTCGCCACCTTCAT
CGTGCAAAAAGTGCTATTGGATGAGATGGGTCTGAACTACATTTGTGCCA
CAGCCGAGCGTTTTTTCGCAGTATCCACCGTCTTGAGCAATATGGTTCAG
GCTTTGATCGAAGTGCCCTCCGTCCGCCTGCTAAAGCACATCGTCCGATG
CTACCTGCGCCTGTCTGAGAACCCTCGTGCCCGCGATGCCCTCCGCCAGT
GCTTGCCTGACGCGTTGAGGAGCGATCAGACGTTTTCTCAATGCCTGAAG
GACGACGTGACGATAAATCGGTGGCTGGCGAATTTGCTGTACAACATAAC
TGAGGGAGCGTGAGAGGAAATATCTTCGATTTGTAAATGGAATAAAGCAC
TCCAAGGCTCAATACAGgataaaaagaaaaattcATAAATTGTGGGTGTC
AAAAGCTTG back to topCoding sequence (CDS) from alignment at CM002455.1:329785..331743+ >rna126 ID=rna126|Name=rna126|organism=Nannochloropsis gaditana|type=CDS|length=1506bp|location=Sequence derived from alignment at CM002455.1:329785..331743+ (Nannochloropsis gaditana)
ATGGAGCTGAGTAAGAAGAGGGAAGTCTACCCGGACCTGGCGCCTGTCCT
GTGGCACTCGGTCGGGACCATGGCCGCGCTCCTGCAAGAGATCATCGCCA
TCTACCCCATGCTCACTCCACCAACCTTGACGGCGCAGGCCAGCAACCGA
GTGTGCAACGCCTTGGCGCTCCTGCAGTGCGTGGCCTCCCACACGGAGAC
CCGgggcctcttccttcaagCACACATCCCCATGTACCTCTACCCGTTCC
TGAACACGGTCATGAGCAAGAGCCGACCCTTCGAATACCTGCGCCTGACC
TCTTTAGGCGTGATTGGCGCACTCGTCAAGGTGGACGACGCGGAAGtaat
ctccttcctcctccaaaccGAGATCATTCCGCTCTGTCTGCGCATCATGG
AGACCGGGAACGAGCTTTCCAAAACCGTCGCCACCTTCATCGTGCAAAAA
GTGCTATTGGATGAGATGGGTCTGAACTACATTTGTGCCACAGCCGAGCG
TTTTTTCGCAGTATCCACCGTCTTGAGCAATATGGTTCAGGCTTTGATCG
AAGTGCCCTCCGTCCGCCTGCTAAAGCACATCGTCCGATGCTACCTGCGC
CTGTCTGAGAACCCTCGTGCCCGCGATGCCCTCCGCCAGTGCTTGCCTGA
CGCGTTGAGGAGCGATCAGACGTTTTCTCAATGCCTGAAGGACGACGTGA
CGATAAATCGGTGGCTGGCGAATTTGCTGTACAACATAACTGAGGGAGCG
TGAATGGAGCTGAGTAAGAAGAGGGAAGTCTACCCGGACCTGGCGCCTGT
CCTGTGGCACTCGGTCGGGACCATGGCCGCGCTCCTGCAAGAGATCATCG
CCATCTACCCCATGCTCACTCCACCAACCTTGACGGCGCAGGCCAGCAAC
CGAGTGTGCAACGCCTTGGCGCTCCTGCAGTGCGTGGCCTCCCACACGGA
GACCCGgggcctcttccttcaagCACACATCCCCATGTACCTCTACCCGT
TCCTGAACACGGTCATGAGCAAGAGCCGACCCTTCGAATACCTGCGCCTG
ACCTCTTTAGGCGTGATTGGCGCACTCGTCAAGGTGGACGACGCGGAAGt
aatctccttcctcctccaaaccGAGATCATTCCGCTCTGTCTGCGCATCA
TGGAGACCGGGAACGAGCTTTCCAAAACCGTCGCCACCTTCATCGTGCAA
AAAGTGCTATTGGATGAGATGGGTCTGAACTACATTTGTGCCACAGCCGA
GCGTTTTTTCGCAGTATCCACCGTCTTGAGCAATATGGTTCAGGCTTTGA
TCGAAGTGCCCTCCGTCCGCCTGCTAAAGCACATCGTCCGATGCTACCTG
CGCCTGTCTGAGAACCCTCGTGCCCGCGATGCCCTCCGCCAGTGCTTGCC
TGACGCGTTGAGGAGCGATCAGACGTTTTCTCAATGCCTGAAGGACGACG
TGACGATAAATCGGTGGCTGGCGAATTTGCTGTACAACATAACTGAGGGA
GCGTGA back to top
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