EWM30586.1, cds126 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30586.1 vs. NCBI_GenBank
Match: gi|585113251|gb|EWM30584.1| (Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 515.383 bits (1326), Expect = 0.000e+0 Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 250
MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA
Sbjct: 51 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 300
BLAST of EWM30586.1 vs. NCBI_GenBank
Match: gi|585113252|gb|EWM30585.1| (Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana] >gi|585113253|gb|EWM30586.1| Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 514.227 bits (1323), Expect = 0.000e+0 Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 250
MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA
Sbjct: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 250
BLAST of EWM30586.1 vs. NCBI_GenBank
Match: gi|585113250|gb|EWM30583.1| (Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 514.227 bits (1323), Expect = 0.000e+0 Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 250
MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA
Sbjct: 91 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 340
BLAST of EWM30586.1 vs. NCBI_GenBank
Match: gi|676387631|ref|XP_009037094.1| (hypothetical protein AURANDRAFT_69805 [Aureococcus anophagefferens] >gi|323452501|gb|EGB08375.1| hypothetical protein AURANDRAFT_69805 [Aureococcus anophagefferens]) HSP 1 Score: 418.313 bits (1074), Expect = 9.682e-146 Identity = 197/250 (78.80%), Postives = 230/250 (92.00%), Query Frame = 0
Query: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 250
+ELSKKRE + DLAP+LWHS GTM LLQEI++IYPML+PP LTA ASNRVCNALALLQCVASH ETRGLFL AH+P+YLYPFLNTV SK+RPFEYLRLTSLGV+GALVK+DD++VI+FLLQTEIIPLCLRIMETG+ELSKTVATFIVQK+LLD+MGLNY+CATAERF+AVSTVL+NMV L+E PS+RLLKHIVRCYLRLS+N RAR+ALRQCLP++LR D TF+ +KDD+T+ RWL++LLYNI+E A
Sbjct: 30 LELSKKRETFTDLAPILWHSFGTMGTLLQEIVSIYPMLSPPNLTAHASNRVCNALALLQCVASHPETRGLFLNAHVPLYLYPFLNTV-SKNRPFEYLRLTSLGVVGALVKMDDSDVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDMGLNYVCATAERFYAVSTVLANMVLTLVEQPSIRLLKHIVRCYLRLSDNLRAREALRQCLPESLR-DHTFAGHIKDDLTVKRWLSSLLYNISEQA 277
BLAST of EWM30586.1 vs. NCBI_GenBank
Match: gi|922865202|gb|KOO32309.1| (cell differentiation protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 416.772 bits (1070), Expect = 3.179e-145 Identity = 201/249 (80.72%), Postives = 226/249 (90.76%), Query Frame = 0
Query: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEG 249
+ELSK+RE +PDLAP+LWHS GT++ALLQEI+AIYP+L+PP LTAQASNRVCNALALLQCVASH +TR LFL AHIP++LYPFLNTV SK+RPFEYLRLTSLGVIGALVKVDDA+VI+FLL TEIIPLCLRIMETG+ELSKTVATFIVQK+LLDE GL YICATAERF+AVSTVL+N+V AL+E PS RLLKHIVRC+LRLS+N RAR+ALRQCLPDALR D TFS CLKDDVT RW LL+NITE
Sbjct: 42 LELSKRRETFPDLAPILWHSFGTVSALLQEIVAIYPLLSPPALTAQASNRVCNALALLQCVASHPDTRTLFLNAHIPLFLYPFLNTV-SKTRPFEYLRLTSLGVIGALVKVDDADVINFLLSTEIIPLCLRIMETGSELSKTVATFIVQKILLDETGLAYICATAERFYAVSTVLANLVGALVEQPSGRLLKHIVRCFLRLSDNARAREALRQCLPDALR-DATFSACLKDDVTTKRWHTQLLFNITES 288
BLAST of EWM30586.1 vs. NCBI_GenBank
Match: gi|551563190|ref|XP_005768296.1| (hypothetical protein EMIHUDRAFT_414254 [Emiliania huxleyi CCMP1516] >gi|551616220|ref|XP_005788958.1| hypothetical protein EMIHUDRAFT_455065 [Emiliania huxleyi CCMP1516] >gi|485618974|gb|EOD15867.1| hypothetical protein EMIHUDRAFT_414254 [Emiliania huxleyi CCMP1516] >gi|485642452|gb|EOD36529.1| hypothetical protein EMIHUDRAFT_455065 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 414.846 bits (1065), Expect = 1.623e-144 Identity = 199/249 (79.92%), Postives = 225/249 (90.36%), Query Frame = 0
Query: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEG 249
+ELSK+RE + DLAP+LWHS GT++ALLQEI+AIYP+L+PP+LTAQASNRVCNALALLQCVASH ETR LFL AHIP++LYPFLNT+ SK+RPFEYLRLTSLGVIGALVKVDD +VI+FLL TEIIPLCLRIMETG+ELSKTVATFIVQK+LLDE GL YICATAERF+AVSTVL N+V +L++ PS RLLKHIVRCYLRLS+NPRAR+ALRQCLPD LR D TFS CLKDDVT RWL LL+NITE
Sbjct: 38 LELSKRRETFIDLAPILWHSFGTISALLQEIVAIYPLLSPPSLTAQASNRVCNALALLQCVASHPETRTLFLNAHIPLFLYPFLNTI-SKTRPFEYLRLTSLGVIGALVKVDDPDVINFLLSTEIIPLCLRIMETGSELSKTVATFIVQKILLDETGLAYICATAERFYAVSTVLGNLVGSLVDQPSARLLKHIVRCYLRLSDNPRAREALRQCLPDVLR-DATFSACLKDDVTTKRWLTQLLFNITES 284
BLAST of EWM30586.1 vs. NCBI_GenBank
Match: gi|552842385|ref|XP_005850551.1| (hypothetical protein CHLNCDRAFT_140433 [Chlorella variabilis] >gi|307110213|gb|EFN58449.1| hypothetical protein CHLNCDRAFT_140433 [Chlorella variabilis]) HSP 1 Score: 409.453 bits (1051), Expect = 1.854e-142 Identity = 198/246 (80.49%), Postives = 220/246 (89.43%), Query Frame = 0
Query: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNI 246
+ELSKKRE +P+LAP LWHS GTMAALLQEI++IYPML PP+LTA ASNRVCNALALLQCVASH ETR LFLQAHIP++LYPFLNT+ SK+RPFEYLRLTSLGVIGALVKVDD EVI+FLL TEIIPLCLR METG+ELSKTVATFIVQK+LLD +GL+YICATAERFFAV VLS+MV L E PSVRLLKHI+RCYLRLS+NPRAR+ALRQCLPD LR+ Q F+ CLKDDVT RWLA LL N+
Sbjct: 20 LELSKKRESFPELAPYLWHSFGTMAALLQEIVSIYPMLQPPSLTAHASNRVCNALALLQCVASHPETRSLFLQAHIPLFLYPFLNTI-SKTRPFEYLRLTSLGVIGALVKVDDTEVINFLLSTEIIPLCLRTMETGSELSKTVATFIVQKILLDGVGLSYICATAERFFAVGAVLSSMVTGLAEQPSVRLLKHIIRCYLRLSDNPRAREALRQCLPDLLRNPQ-FTACLKDDVTTRRWLAQLLVNV 263
BLAST of EWM30586.1 vs. NCBI_GenBank
Match: gi|298710510|emb|CBJ25574.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 410.994 bits (1055), Expect = 5.031e-142 Identity = 198/249 (79.52%), Postives = 227/249 (91.16%), Query Frame = 0
Query: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEG 249
+ELSKKRE + DLAP+LWHS GT++ALLQE++AIYP+L+PPTLT ASNRVCNALALLQCVASH ETR LFL+AHIP+YLYPFLNTV SK+RPFEYLRLTSLGVIGALVK+DDAEVI+FLLQTEIIPLCLRIMETG+ELSKTVATFIVQK+LLDE GL YIC TAERF+AVSTVL NMV L+E PSVRLLKH+VRCYLRLS+N RAR+ALRQCLPDALR++ TF+ LKDDV++ RWL +LL+N+TE
Sbjct: 86 LELSKKREAFTDLAPILWHSYGTISALLQEMVAIYPLLSPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTV-SKNRPFEYLRLTSLGVIGALVKMDDAEVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDEHGLEYICQTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRNN-TFTNVLKDDVSVKRWLTSLLFNLTES 332
BLAST of EWM30586.1 vs. NCBI_GenBank
Match: gi|301099265|ref|XP_002898724.1| (cell differentiation protein rcd1 [Phytophthora infestans T30-4] >gi|262104797|gb|EEY62849.1| cell differentiation protein rcd1 [Phytophthora infestans T30-4]) HSP 1 Score: 407.912 bits (1047), Expect = 1.862e-141 Identity = 194/250 (77.60%), Postives = 224/250 (89.60%), Query Frame = 0
Query: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 250
+ELSKKRE +P+LAP+LWHS GT+AALLQEI+AIYP+L+PP LTA ASNRVCNALALLQCVASH+ETR FL AHIP+YLYPFLNTV SK+RPFEYLRLTSLGVIGALVK+DD++VI+FLLQTEIIPLCLRIME G+ELSKTVATFIVQK+LLD+MGL YIC T ERF+AV TVLS MV L+EVP+ RLLKHI+RCYLRLS+NPRA++ALRQCLP+ALR + TF + LKDD T +RWLA LLYNI+ A
Sbjct: 51 LELSKKREEFPELAPILWHSFGTVAALLQEIVAIYPLLSPPQLTAHASNRVCNALALLQCVASHSETRTHFLNAHIPLYLYPFLNTV-SKNRPFEYLRLTSLGVIGALVKIDDSDVINFLLQTEIIPLCLRIMEAGSELSKTVATFIVQKILLDDMGLTYICHTPERFYAVGTVLSKMVATLVEVPAPRLLKHIIRCYLRLSDNPRAKEALRQCLPEALR-NHTFDEALKDDATTSRWLAQLLYNISTDA 298
BLAST of EWM30586.1 vs. NCBI_GenBank
Match: gi|1214710739|gb|OWZ21802.1| (Cell differentiation protein rcd1 [Phytophthora megakarya]) HSP 1 Score: 405.601 bits (1041), Expect = 6.946e-141 Identity = 193/250 (77.20%), Postives = 222/250 (88.80%), Query Frame = 0
Query: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 250
+ELSKKRE +P+LAP+LWHS GT+AALLQEI+AIYP+L+PP LTA ASNRVCNALALLQCVASH ETR FL AHIP+YLYPFLNTV SK+RPFEYLRLTSLGVIGALVK+DD++VI+FLLQTEIIPLCLRIME G+ELSKTVATFIVQK+LLD+MGL YIC T ERF+AV TVLS MV L+E P+ RLLKHI+RCYLRLS+NPRA++ALRQCLP+ALR + TF + LKDD T +RWLA LLYNI+ A
Sbjct: 25 LELSKKREEFPELAPILWHSFGTVAALLQEIVAIYPLLSPPQLTAHASNRVCNALALLQCVASHAETRTHFLNAHIPLYLYPFLNTV-SKNRPFEYLRLTSLGVIGALVKIDDSDVINFLLQTEIIPLCLRIMEAGSELSKTVATFIVQKILLDDMGLTYICHTPERFYAVGTVLSKMVATLVEAPAPRLLKHIIRCYLRLSDNPRAKEALRQCLPEALR-NHTFDEGLKDDATTSRWLAQLLYNISTDA 272 The following BLAST results are available for this feature:
BLAST of EWM30586.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|