rna1221, rna1221 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1221
Unique Name	rna1221
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3005
Alignment location	CM002457.1:92906..95273 +

Link to JBrowse

Properties


Property Name	Value
Product	pre-mrna-processing factor 17
Orig transcript id	gnl\|cribi\|Naga_100083g16.6777.mrna
Orig protein id	gnl\|cribi\|Naga_100083g16.6777
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:92906..95273 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100083g16	gene1176	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1221	rna1221-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29450.1	cds1220	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:92906..95273+
coding sequence from alignment at CM002457.1:92906..95273+

mRNA sequence

>rna1221 ID=rna1221|Name=rna1221|organism=Nannochloropsis gaditana|type=mRNA|length=3005bp
CGACACTCCTGTGGGCGTGCTTTCCGTGTCGCTGTCACTCCCATAGGCAT
TGGTTATTGTGTCCATGACACCTGGTTAGTTTGTCGAATGGATGTGTGAG
GTGATGCGTGAGTTTTGCAGGTGCTCTAAACGGGTTAAGACAGCATATCA
TTGAATGCGTGGCCGGACCACCGCAAGCACCAGAAAGAGTTCATTCTCCA
TCCTTATAATGCCCTCTAGCTTGAAAATCGCGCTTGAATAGGTATGTTGC
TTGAGCACGAGGCCTCAGTCAAATATCGAGGGGTGTCTGGCCATGGGGGA
GCGTTACCTTTCTTGTTCCGGGTTGGTTTGCGAGGAAATTGCTGTATTCC
GTCCCTTTTGGGTGTAATGCAGGCTGAGGTCTACGCTGTGTACCAGCGAT
ATAAACAATTCATCATCGCTAGAAATCCCTTAGATTCGTCAATGGGACAC
TTATTGGTGCGAATTTCATGACCGCTTTATATCCAGCAAGCCTGCCCCCG
CTGTGGCAGTGTAGTGGTGCTGCGCTTTCTTCTTTGCATTGAGTACTGAA
GCCAATCAATTCGAGCCGAAGTGTTTTGTAGGCATGAGCAAGAACTGGAA
TGTCTTAGCCAAAGGCGGTGGTCTGGAGAAGCTGAAGGTTGGAGAGCTGA
AAGGTTTTCTCAAGGAGAACGGCTTGTCCCAGACCGGCGAGAAAGGTACG
CTCATGTTCCGCATCAAAGCCTTTCTCGATGGAGAAGGGATGAAAATAGA
CGGCCGCAATCCAGCCACCATGAAGGCAGGCGAGCTCAAAAAAGAGTGCG
CGAAGCGAGGTTTGTCTCCTATGGGTTACCCTGACGAATTGCTAGAGTCC
TTGATCAATTACCTCAAGACACACGGGGGAGCCGATAAAGCGACAAATGC
GGCCCCCGGGATAGATCAAAAATCGACTGACAAGACACTTGGAAAGGCTG
AGGACAACATTGGTGACGATGGTGATGTGGCATCGGCCTTGGTCCACAGG
ATCATGCAACTTGGCGAGGAGGAAGACTGGGCTGCGATTCTCAATTTAGG
GTGTACCGGACTTAAAGTAAGCCGACAAAGCCCCACTGCATTGCTGCGGA
AGTGTTACCACCGCCTCTCCTTGAACGTCCACCCCGACCGACTGGGTGGC
TCAGTCCCAGAGGCGACCAAAGCCTTTCAAGCAGTGGTGACAGCTTTTGA
GCGGCTCTCCGAACCTGAACGGGAGGAAGAGCAAGGGAACAAGAAGGGGA
AAGCGACGACGAAAACCAAGACATTAGCACGGTCCAACGAGAACTGCTTC
CGAAGCCGCATCTACTGTCCACGTTGTAGGACCGAGTGGGGCCAGCCCAT
CGACGGTCTGCCTCCGTACACGTATAATTACATGATGATGGGCTTGAAAA
CCTTCGTGTGCTCCACGTGTCTCTGTGACTTTGGGGCGCTCACCGCCTTG
CATAAATGTCCACATTGCCGACGTTCCTTCGAGTACGACCCGCATGATTA
CCACCGACAGGTGGTATGTGGGAACAAAGGCTGTACGAAGCCCTTTGGGT
TCTTCCTGTTCCCTGTCTCCGACCGGGTGGAAAAGGAAATGCGTGGAGAA
TTGCGAGCCGAACAAGAAAGACGGCTCCGGGCCCGGGAAAGCAAACTAGC
CCGCTTGGCCCGCTCGAAACGGAAGCGGGAAGGGATGGAGAAGGGGGAAG
GAGAGCAAGCAGCAGATGATCGCCGGTTGCAACTCCGTTTATTCGTGCAA
GGCTTGCTCGATGCGTGCCCTCGGTGTGGGGAGGAAGTGGCATGCAAGCC
CGAGGATCGCGAGGCTCACAAAGACCATTTGCGTGACTGTCATGATAAGG
ACAAGATCGAGGCGCATCGGGAAAAGGTCCGGAAAGCGGAGGCCCACCAA
GCCGACAAGGAGGCTAAGAGAGCGCAGCAAGAGGACTTACAATCCTTGCG
GACCTGGGAGTTCTTGGGAGGAAATGAGGGTGAATTGTGGTTATTGACAG
ACGGGCAGCTTGCCCACCTGTGCAAAGAGAAAGCACTGTTGCCCAAGGAA
GAAATAGATGAAATGGGAATGGGAGATAAGAAGGGAAGTGGGGCCAAGAA
AACAACTGCGGCGGCGCTCTCCAAGGACGAAATGATTGCGAAACTCGTGG
CGCAAAGCAAGAGGGAAGGACCCCTTCGTCTTACAGATGGGACGGAATCA
GGGGATATAAAGCGGGAGTGTGGGGAGCCCAATACAAGATTCTCACGAGA
CTCACTGCCGGATAACCTGCACGGCATGTCTCTTTTGCAGCTTCGAGCGG
TGTGTGCAGCGCATGCATACGTGCCTCAGGCCACTTCGCAGGCTGCTCTT
GTCCGGGAATTGGAACGGGCGGCAGCTAAAGTGGAAGGGCATGAGGAGAC
GCTGCTTTTGGAAGACTAATTGGAAAAGTAAACAAGATAAGTGAGAAAAC
TTGCATAGGAGAGGCATGTATGAACGCAACCCAAAAAATCAATACTTTGG
CTTCGCACTTGATGTAAGAGCTCAAGAGCAAGGCCGGCCCCTTTCATAAA
TTTGTTTGTAAGGGCTGTAAGATAACTATTAGTGAAACGCGGATGTATGG
GGTAAATTGACTCCTGTGATTTCAAGAGCAGTTTGTGTTGCAATACTCTT
TTGTCTGCATGCGAAGGGGCAGTCGTGCGCCCGTTTTGCGCCGCCACATT
TTCTACACCTGTACGAGCCCCTGGAACGTCGACATCTTTTTTTCCAAGAA
TATGCTGTGCGATTCTTGTTCTTCAGGTCTGATTGCCGCCCCGAAGAGTC
TTCTTGTAGAACTGGCTCTATGTCTGTGAACGTCATCCGCTGATTGATGA
CACGAGAATTGTCATATGGCTCTTCAAAATGCGATTTTCCTTGTAAAGAC
TCTGAACTTTGAACACTGTCGCTTGTGGGGACCGATTGTATCCGGTCGAA
GTCGTTCCACAATTCTTTGACATACGTGGGACTCTCATCAACATCTGGCG
GGGTA

protein sequence of rna1221

>rna1221-protein ID=rna1221-protein|Name=rna1221|organism=Nannochloropsis gaditana|type=polypeptide|length=612bp
MDTITNAYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNS
APFVNPALKTVMNRPGFIPPTSRELTTNVKAATLLAPIQGPEHPFRREMD
SMGGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNVHN
YMRKEGLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKGVEEDEDLGEE
EDGPWAPAKEEPVITQLEAGTLTEEQKRHRAELAERKAAKHRGYDEDEDL
DRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLR
PVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVW
SVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQC
ISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHL
SAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVT
PSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSP
NNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVA
SCGWDGLIKLWE

mRNA from alignment at CM002457.1:92906..95273+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1221 ID=rna1221|Name=rna1221|organism=Nannochloropsis gaditana|type=mRNA|length=2368bp|location=Sequence derived from alignment at CM002457.1:92906..95273+ (Nannochloropsis gaditana)
ACACTGCCACAGCGGGGGCAGGCTTGCTGGATATAAAGCGGTCATGAAAT
TCGCACCAATAAGTGTCCCATTGACGAATCTAAGGGATTTCTAGCGATGA
TGAATTGTTTATATCGCTGGTACACAGCGTAGACCTCAGCCTGCATTACA
CCCAAAAGGGACGGAATACAGCAATTTCCTCGCAAACCAACCCGGAACAA
GAAAGGTAACGCTCCCCCATGGCCAGACACCCCTCGATATTTGACTGAGG
CCTCGTGCTCAAGCAACATACCTATTCAAGCGCGATTTTCAAGCTAGAGG
GCATTATAAGGATGGAGAATGAACTCTTTCTGGTGCTTGCGGTGGTCCGG
CCACGCATTCAATGATATGCTGTCTTAACCCGTTTAGAGCACCTGCAAAA
CTCACGCATCACCTCACACATCCATTCGACAAACTAACCAGGTGTCATGG
ACACAATAACCAATGCCTATGGGAGTGACAGCGACACGGAAAGCACGCCC
ACAGGAGTGTCGTCTTCTGCTCCGACATCCACCCTATCATCCTCAGTCTC
CGGGCCCCCCGGCGGCCCTTATCTCGTCAATCGCTCCGTCAACTCGGCCC
CGTTTGTGAACCCTGCTTTGAAAACCGTGATGAATCGTCCTGGTTTTATA
CCGCCAACGTCGCGGGAGCTCACCACCAACGTGAAGGCTGCCACTCTACT
GGCTCCAATTCAGGGACCAGAGCATCCTTTTCGTCGGGAAATGGACTCGA
TGGGAGGCACGAAGCTGGCCACGGGTGGTTACAAGGAAGACGCTGTCATG
GAGAAATGGAATTTCCATGAACAATTTCATACCTTCCACGCTCAAGGGTA
CGCGAGGGATGACGTGGCCGGGGGTATCATAGGGAATGTGCATAATTACA
TGCGCAAGGAAGGCCTGAGGGACCCGGCTGGTCCGACAGCAATAAATGCG
GGCAGGGTGACAAAACCGAGCGGGAGCACAGCGTTGGAGCCCGTGTCGCG
ACGGAAGCGAaagggcgtggaagaagacgaggatttgggagaagaggagg
atggtccGTGGGCTCCTGCAAAGGAAGAACCTGTCATAACACaattggag
gcggggacctTAACCGAGGAGCAAAAGCGGCACCGGGCAGAGCTGGCGGA
GCGGAAGGCCGCCAAACACCGCGGctacgacgaggacgaggatttgGACC
GACGGGATGAGCGAAAAGTGGCGCATTTGTTGCCTCCGCGCCATGACCGG
GACACGGTAGCCTCGGAGCCCACCACGCAGTTTCACGGTAAAGGCGAGAG
TGACTACCAGGGACGGTCCTGGGTGGAGCCACCGGGCGGGCTTCGGCCCG
TGGAGACCGACCATGCTTGTTATTTGCCGAAGCGGTGCGTGCATCGTTAT
ACGGGCCATGGAAAAGGCGTGCAAGCCATCGAGTTCTTCCCGGGCAccgg
gcacctcctcctctctgcatCCTTGGACGGTACCTGCAAAGTCTGGTCCG
TCTACGATGAGAGGCAACTGCGACGGACTTACTCAGGCCACACAGCTGCA
GTCCGTTGCATCAATTTTAGCCCGGATGGCAGTCGCTTCCTGAGTGGGGG
CTTCGATCGTTTCCTGCGCTTGTGGGATACCGAGACTGGACAATGCATCT
CCACCATCACCAACCGTAAGGTTCCGTACGCCGCTAAATTCTACCCGCCC
AACGACAACCTCTTCATTTTTGCCGCTTCGGACAATCGTCTGTACACGTA
CGACTGGTCCTCGGGGGAGATGGTTCAAGAATACAATCACCACCTGTCCG
CGGTCAACACCGTCACCTTTTACGACAATAACTCCCGcttcgcctccacc
tccgacGACAAGAAAATGCTGCTGTGGGAGTGGGACATTTCGGTGCCTAT
CAAATACATAGCCGAGCCTGGGATGCATTCAATGCCCGCAGTGACCCCCT
CGCCTGCGGGCGACTTTGTGGCGTGTCAATCGTTGGACAACACTATCAAA
ATTTTTGGTTGCCGGGATCGCTTCAAGCTCTTGCACAAAAAAGTCTTCAA
AGGACACACCATTGCTGGATTTGCTTGTCAGCCCGCATTTTCTCCCAACA
ATCGATACTTGGCCTctggggatggggagggaaagttgCACTTCTGGGAT
TTCAAAAACACCCGGGCTTTGGCAAAATATCGGGCGCATGACAATGGTCC
GTGCATCGGCTTGGTTTGGCACCCCGTCGAAGCCTCCATGGTTGCGTCGT
GCGGGTGGGATGGCTTGATTAAATTGTGGGAATAGAAAGGAGGTCTGGAC
GGGCAGCGAGTCCGGCGGCACCTCACACAGAAGCATTTAAGTCAAAATTA
AATACAAAAACTTGAAAG

Coding sequence (CDS) from alignment at CM002457.1:92906..95273+

>rna1221 ID=rna1221|Name=rna1221|organism=Nannochloropsis gaditana|type=CDS|length=1839bp|location=Sequence derived from alignment at CM002457.1:92906..95273+ (Nannochloropsis gaditana)
ATGGACACAATAACCAATGCCTATGGGAGTGACAGCGACACGGAAAGCAC
GCCCACAGGAGTGTCGTCTTCTGCTCCGACATCCACCCTATCATCCTCAG
TCTCCGGGCCCCCCGGCGGCCCTTATCTCGTCAATCGCTCCGTCAACTCG
GCCCCGTTTGTGAACCCTGCTTTGAAAACCGTGATGAATCGTCCTGGTTT
TATACCGCCAACGTCGCGGGAGCTCACCACCAACGTGAAGGCTGCCACTC
TACTGGCTCCAATTCAGGGACCAGAGCATCCTTTTCGTCGGGAAATGGAC
TCGATGGGAGGCACGAAGCTGGCCACGGGTGGTTACAAGGAAGACGCTGT
CATGGAGAAATGGAATTTCCATGAACAATTTCATACCTTCCACGCTCAAG
GGTACGCGAGGGATGACGTGGCCGGGGGTATCATAGGGAATGTGCATAAT
TACATGCGCAAGGAAGGCCTGAGGGACCCGGCTGGTCCGACAGCAATAAA
TGCGGGCAGGGTGACAAAACCGAGCGGGAGCACAGCGTTGGAGCCCGTGT
CGCGACGGAAGCGAaagggcgtggaagaagacgaggatttgggagaagag
gaggatggtccGTGGGCTCCTGCAAAGGAAGAACCTGTCATAACACaatt
ggaggcggggacctTAACCGAGGAGCAAAAGCGGCACCGGGCAGAGCTGG
CGGAGCGGAAGGCCGCCAAACACCGCGGctacgacgaggacgaggatttg
GACCGACGGGATGAGCGAAAAGTGGCGCATTTGTTGCCTCCGCGCCATGA
CCGGGACACGGTAGCCTCGGAGCCCACCACGCAGTTTCACGGTAAAGGCG
AGAGTGACTACCAGGGACGGTCCTGGGTGGAGCCACCGGGCGGGCTTCGG
CCCGTGGAGACCGACCATGCTTGTTATTTGCCGAAGCGGTGCGTGCATCG
TTATACGGGCCATGGAAAAGGCGTGCAAGCCATCGAGTTCTTCCCGGGCA
ccgggcacctcctcctctctgcatCCTTGGACGGTACCTGCAAAGTCTGG
TCCGTCTACGATGAGAGGCAACTGCGACGGACTTACTCAGGCCACACAGC
TGCAGTCCGTTGCATCAATTTTAGCCCGGATGGCAGTCGCTTCCTGAGTG
GGGGCTTCGATCGTTTCCTGCGCTTGTGGGATACCGAGACTGGACAATGC
ATCTCCACCATCACCAACCGTAAGGTTCCGTACGCCGCTAAATTCTACCC
GCCCAACGACAACCTCTTCATTTTTGCCGCTTCGGACAATCGTCTGTACA
CGTACGACTGGTCCTCGGGGGAGATGGTTCAAGAATACAATCACCACCTG
TCCGCGGTCAACACCGTCACCTTTTACGACAATAACTCCCGcttcgcctc
cacctccgacGACAAGAAAATGCTGCTGTGGGAGTGGGACATTTCGGTGC
CTATCAAATACATAGCCGAGCCTGGGATGCATTCAATGCCCGCAGTGACC
CCCTCGCCTGCGGGCGACTTTGTGGCGTGTCAATCGTTGGACAACACTAT
CAAAATTTTTGGTTGCCGGGATCGCTTCAAGCTCTTGCACAAAAAAGTCT
TCAAAGGACACACCATTGCTGGATTTGCTTGTCAGCCCGCATTTTCTCCC
AACAATCGATACTTGGCCTctggggatggggagggaaagttgCACTTCTG
GGATTTCAAAAACACCCGGGCTTTGGCAAAATATCGGGCGCATGACAATG
GTCCGTGCATCGGCTTGGTTTGGCACCCCGTCGAAGCCTCCATGGTTGCG
TCGTGCGGGTGGGATGGCTTGATTAAATTGTGGGAATAG

Synonyms

Publications