EWM29450.1, cds1220 (CDS) Nannochloropsis gaditana

Overview
NameEWM29450.1
Unique Namecds1220
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:93352..95190 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29450.1
Productpre-mrna-processing factor 17
Orig transcript idgnl|cribi|Naga_100083g16.6777.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:93352..95190 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM29450.1 vs. NCBI_GenBank
Match: gi|553192563|ref|XP_005855598.1| (pre-mRNA-processing factor 17 [Nannochloropsis gaditana CCMP526] >gi|422293461|gb|EKU20761.1| pre-mRNA-processing factor 17 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1294.26 bits (3348), Expect = 0.000e+0
Identity = 608/610 (99.67%), Postives = 608/610 (99.67%), Query Frame = 0
Query:    1 MDTITNAYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPALKTVMNRPGFIPPTSRELTTNVKAATLLAPIQGPEHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNVHNYMRKEGLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKGVEEDEDLGEEEDGPWAPAKEEPVITQLEAGTLTEEQKRHRAELAERKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKL 610
            MDTITNAYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPALKTVMNRPGFIPPTSRELTTNVKAATLLAPIQGPEHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNVHNYMRKE LRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKGVEEDEDLGEEEDGPWAPAKEEPVITQLEAGTLTEEQKRHRAELAERKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIK 
Sbjct:    1 MDTITNAYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPALKTVMNRPGFIPPTSRELTTNVKAATLLAPIQGPEHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNVHNYMRKECLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKGVEEDEDLGEEEDGPWAPAKEEPVITQLEAGTLTEEQKRHRAELAERKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKF 610          
BLAST of EWM29450.1 vs. NCBI_GenBank
Match: gi|585111986|gb|EWM29450.1| (pre-mrna-processing factor 17 [Nannochloropsis gaditana])

HSP 1 Score: 1280.39 bits (3312), Expect = 0.000e+0
Identity = 612/612 (100.00%), Postives = 612/612 (100.00%), Query Frame = 0
Query:    1 MDTITNAYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPALKTVMNRPGFIPPTSRELTTNVKAATLLAPIQGPEHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNVHNYMRKEGLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKGVEEDEDLGEEEDGPWAPAKEEPVITQLEAGTLTEEQKRHRAELAERKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE 612
            MDTITNAYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPALKTVMNRPGFIPPTSRELTTNVKAATLLAPIQGPEHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNVHNYMRKEGLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKGVEEDEDLGEEEDGPWAPAKEEPVITQLEAGTLTEEQKRHRAELAERKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE
Sbjct:    1 MDTITNAYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPALKTVMNRPGFIPPTSRELTTNVKAATLLAPIQGPEHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNVHNYMRKEGLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKGVEEDEDLGEEEDGPWAPAKEEPVITQLEAGTLTEEQKRHRAELAERKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE 612          
BLAST of EWM29450.1 vs. NCBI_GenBank
Match: gi|298712044|emb|CBJ32980.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 579.326 bits (1492), Expect = 0.000e+0
Identity = 306/589 (51.95%), Postives = 390/589 (66.21%), Query Frame = 0
Query:   48 VNSAPFV----------NPALKTVMNRPGFIPPTS---RELTTNVKAATLLAPIQGPEHPFRREMDS-MGGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNVHNYMRKEG---LRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKGVEEDEDLGE-EEDGPWAPAKEEP-VITQLEAGTLTEEQKRHRAELAERKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETD----HACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSG-EMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE 612
            VN+AP V          +  + + + R G  P +    + +  N KA   LAP+QGP HP RR++    GG    TGG  E A +E+W+FHEQ+HTFH  GYA D   G  +GN+  + +++G   L    G    N  R  +     A       + KG E   DLG+ + DG WAP  E P   T  EAGT+T EQ + R      +A KHR Y+ +ED DRRDERK++HLLPPRH+RDT +    + FHGK + DYQGRSW+ PP G R VE +    H C+ PK+C+HRYTGH KGVQAI FFPG GHLLLSAS+DG+ K+W V   R  RRTY GH+AAVR I FS DG +FLS G+DRF+R WDTETGQCI+T TNRK+PY AK+YP ++N+F+   SDNR+  YD  +G E+VQEYNHHL  VNTV F D+N RF STSDDKK+L+WE++I VPIKYIAEP MHSMPA T  P G F   QSLDN I  +  RD+F+ + KK FKGH  AG+AC+ AFSPN ++LASGDG+GK++ WD+ +T+   K + HD+GPCI + WHP+E S VA+ GWDG+IKLW+
Sbjct:   40 VNAAPNVLVSGAMAQATDSLMSSPLGRLGLKPSSKTGGQIMIHNPKAEHFLAPVQGPAHPHRRDLPVPAGGRATGTGGVIEQASLEEWSFHEQYHTFHQFGYAVDS-RGDTVGNLSEHSKRQGDTVLSAEVGGLRRNK-RKKQAGAGAAGAAAVGGEGKGEERGGDLGDSDNDGVWAP--EVPREKTDFEAGTMTAEQTKFREAWEAEQAKKHREYNMEEDHDRRDERKISHLLPPRHNRDTESKTARSTFHGKAQHDYQGRSWMAPPAGARSVEDEGEDVHKCFTPKKCIHRYTGHTKGVQAISFFPGYGHLLLSASMDGSVKIWDVNGGRGQRRTYQGHSAAVRDIQFSNDGKQFLSAGYDRFIRQWDTETGQCIATFTNRKMPYCAKYYPVDNNMFLCGCSDNRVVQYDARNGSEIVQEYNHHLGPVNTVLFVDDNQRFVSTSDDKKVLIWEYNIPVPIKYIAEPDMHSMPATTLHPTGGFFVGQSLDNKIVTWTARDKFRQMKKKEFKGHVNAGYACRMAFSPNGKFLASGDGQGKMYIWDWGSTKVYRKLQCHDDGPCIDVAWHPLEPSWVATAGWDGVIKLWD 624          
BLAST of EWM29450.1 vs. NCBI_GenBank
Match: gi|1214704169|gb|OWZ16068.1| (Pre-mRNA splicing factor [Phytophthora megakarya])

HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 298/625 (47.68%), Postives = 383/625 (61.28%), Query Frame = 0
Query:    7 AYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPA-LKTVMNRPGFIPPTSR-ELTTNVKAATLLAPIQGPEHPFRREMDSM-----GGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNV-HNYMRKEGLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKGV------EEDEDLGEE-EDGPWAPAKEEPV-ITQLEAGTLTEEQKRHRAELAE---RKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE 612
            AY S SD +  P    S++P ST S+S++ P          VNSAPFV  +  +   N+  F+   SR +L  N+   + LAP  GP      E+  +     G  K    G  E A ME ++F  Q+HT H Q  +R         N+  N  +      PA P  I    +  P         + +KRK           ED G+E  DG WAP K++    T  E  T+TEEQK+ R E  E   RKA   +  DE+ D DR  E+K  HLLP R      A E  ++F G  E DYQGR+WVEPP  L+P + DH  ++PK+C+H++TGH KGVQAIE FP  GHLLLS S+D T ++W VY+ER  +R Y GH+ AVR INFS DG +FLS GFDRF++LWDTETGQ +++ T R+VPY  KFYP ++  F+   S+N +  +D  SGE+VQEYNHHL AVN+VTF D+N RF STSDDKK+L+WEW I VPIKYI+EP MHSMPAVT  P+G F A QS++N I ++  RD+FK+  KKVF+GH  AG+ACQ  FSPN +YL SGDGEGKL FWD+K T+ + K RAHD GP +G +WHP+E S V SCGWDGLIK W+
Sbjct:    6 AYAS-SDDDEVP---RSTSPRSTDSTSLALP---------LVNSAPFVAVSDNQEQANKTAFLAAASRTQLAVNLPVESTLAPFVGPHGGNSTELALLDPLRAGSGKEIVTGVVEKADMEDYSFEAQYHT-HNQTLSR---------NIPRNRAKGAPPSAPALPGEILVDDIVTPGEEDVFTRRAAKKRKNQTLSKERAAAEDFGDEMTDGIWAPYKDKNKHWTDAEQETMTEEQKKLREEHQEAKRRKAEAKQVMDEEMDFDRMVEKKTGHLLPARLKAGQTALEGKSKFMGDQEYDYQGRAWVEPPRTLKPDDGDHQVFMPKKCIHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRAINFSNDGKQFLSCGFDRFIQLWDTETGQTVNSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSMNNHIDVYSARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYLMSGDGEGKLVFWDWKTTKMIKKLRAHDRGPTMGAIWHPLEPSKVVSCGWDGLIKYWD 607          
BLAST of EWM29450.1 vs. NCBI_GenBank
Match: gi|695399075|ref|XP_009522168.1| (putative pre-mRNA splicing factor [Phytophthora sojae] >gi|348679635|gb|EGZ19451.1| putative pre-mRNA splicing factor [Phytophthora sojae])

HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 298/626 (47.60%), Postives = 383/626 (61.18%), Query Frame = 0
Query:    7 AYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPAL---KTVMNRPGFIPP-TSRELTTNVKAATLLAPIQGPEHPFRREMDSM-----GGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNVHNYMRKEGLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKG--VEED----EDLGEEE-DGPWAPAKEE-PVITQLEAGTLTEEQKRHRAELAE---RKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE 612
            AY S  + E++     S++P ST S S++ P          VNSAPFV  AL   +   N+  F+   T  +L  N+   + LAP  GP+     ++  +     G  K    G  E A ME ++F  Q+HT++ Q  +R+           N  +      PA P    A  +  P         + +KRK   V ++    ED G+E  DG WAP KE+   +T  E GT+TE+QK  R E  E   RKA      D++ D DR  E+K  HLLP R      A E  + F G  E DYQGR+WVEPP  L+P   DH  +LPKRCVH++TGH KGVQAIE FP  GHLLLS S+D T ++W VY+ER+ +R Y GH+ AVR INFS DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  F+   S+N +  +D  SGE+VQEYNHHL AVN+VTF D+N RF STSDDKK+L+WEW I VPIKYI+EP MHSMPAVT  P+G F A QSL+N I ++  RD+FK+  KKVFKGH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G +WHP+E S V SCGWDGLIK W+
Sbjct:    6 AYASSDEEEAS----RSTSPRSTDSPSLALP---------VVNSAPFV--ALTDRQEEANKAAFLTAGTQTQLAVNLPVESTLAPYVGPQSSGTMDLALVDPLRAGSGKQVVTGVVEQADMEDFSFEAQYHTYN-QTLSRNPA--------RNRAKGAPPSAPALPGEKLADTIVAPGEENVFTSCNAKKRKNQVVSKERAAAEDFGDEATDGIWAPYKEKGKTLTDAEKGTMTEQQKALREEHQEAKRRKAEAKEEADDEMDFDRMVEKKTGHLLPARLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRTLKPDNGDHQVFLPKRCVHKWTGHTKGVQAIELFPQYGHLLLSGSMDNTVRIWDVYNERKCQRVYEGHSGAVRGINFSNDGRQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTNFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFKGHQNAGYACQIGFSPNGQYIMSGDGEGKLVFWDWKTTKMIKKLRAHDRGPTMGALWHPLEPSKVISCGWDGLIKYWD 607          
BLAST of EWM29450.1 vs. NCBI_GenBank
Match: gi|570937120|gb|ETP02377.1| (hypothetical protein F441_20540 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 299/628 (47.61%), Postives = 387/628 (61.62%), Query Frame = 0
Query:    7 AYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPA-LKTVMNRPGFIPPTSR-ELTTNVKAATLLAPIQGP------EHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFH---AQGYARDDVAGGIIGNVHNYMRKEGLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKG--VEED----EDLGEE-EDGPWAPAKEEPV-ITQLEAGTLTEEQKRHRAELAE---RKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE 612
            AY S SD E+ P    S++P ST + S+S P          VNSAPFV  +  +   N+  F+   S+  L  N+   + LAP  GP      E      + +  G ++ TG   E A ME ++F  Q+HT++   ++  AR+ V G                 PA P  I    +            + +KRK   + ++    ED G+E  DG WAP K++   +T  E GT+ E+QK  R E  E   RKAAK  G DE+ D DR  E+K +HLLP R      A E  + F G  E DYQGR+WVEPP  L+P + DH  +LPKRCVH++TGH KGVQAIE FP  GHLLLS S+D T ++W VY+ER  +R Y GH+ AVR INFS DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  F+   S+N +  +D  SGE+VQEYNHHL AVN+VTF D+N RF STSDDKK+L+WEW I VPIKYI+EP MHSMPAVT  P+G F A QSL+N I ++  RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G +WHP+E S + SCGWDGLIK W+
Sbjct:    6 AYAS-SDDETAPL---STSPRSTDAPSLSLP---------VVNSAPFVALSDSQDQANKAAFLSAGSQTRLAVNLPVESTLAPFVGPHGGDSTELALTDPLRAGSGKEMVTG-VVEQAAMEDYSFEAQYHTYNQTLSRNIARNRVKGAPPSA------------PALPGEIVPDNIVATGEEDVFTRRNAKKRKNQTISKERAAAEDFGDEPTDGIWAPYKDKSKHLTDAEQGTMNEQQKALREEHQEAKRRKAAKEEG-DEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 606          
BLAST of EWM29450.1 vs. NCBI_GenBank
Match: gi|567975817|gb|ETL26353.1| (hypothetical protein L916_19960 [Phytophthora parasitica])

HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 296/628 (47.13%), Postives = 384/628 (61.15%), Query Frame = 0
Query:    7 AYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPA-LKTVMNRPGFIPPTSR-ELTTNVKAATLLAPIQGP------EHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFH---AQGYARDDVAGGIIGNVHNYMRKEGLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKG--VEED----EDLGEE-EDGPWAPAKEEPV-ITQLEAGTLTEEQKRHRAELAE---RKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE 612
            AY S SD E+ P    S++P ST + S+S P          VNSAPFV  +  +   N+  F+   S+  L  N+   + LAP  GP      E      + +  G ++ TG   E A ME ++F  Q+HT++   ++  AR+ V G                 PA P  I    +            + +KRK   + ++    ED G+E  DG WAP K++   +T  E GT+ E+QK  R E  E   RKA      DE+ D DR  E+K +HLLP R      A E  + F G  E DYQGR+WVEPP  L+P + DH  +LPKRCVH++TGH KGVQAIE FP  GHLLLS S+D T ++W VY+ER  +R Y GH+ AVR INFS DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  F+   S+N +  +D  SGE+VQEYNHHL AVN+VTF D+N RF STSDDKK+L+WEW I VPIKYI+EP MHSMPAVT  P+G F A QSL+N I ++  RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G +WHP+E S + SCGWDGLIK W+
Sbjct:    6 AYAS-SDDETAPL---STSPRSTDAPSLSLP---------VVNSAPFVALSDSQDQANKAAFLSAGSQTRLAVNLPVESTLAPFVGPHGGDSTELALTDPLRAGNGKEMVTG-VVEQAAMEDYSFEAQYHTYNQTLSRNIARNRVKGAPPSA------------PALPEEIVPDNIVATGEEDVFTRRNAKKRKNQTISKERAAAEDFGDEPTDGIWAPYKDKSKHLTDAEQGTMNEQQKALREEHQEAKRRKAEAKEEGDEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 607          
BLAST of EWM29450.1 vs. NCBI_GenBank
Match: gi|567947113|gb|ETK72906.1| (hypothetical protein L915_20087 [Phytophthora parasitica])

HSP 1 Score: 543.502 bits (1399), Expect = 0.000e+0
Identity = 296/628 (47.13%), Postives = 384/628 (61.15%), Query Frame = 0
Query:    7 AYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPA-LKTVMNRPGFIPPTSR-ELTTNVKAATLLAPIQGP------EHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFH---AQGYARDDVAGGIIGNVHNYMRKEGLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKG--VEED----EDLGEE-EDGPWAPAKEEPV-ITQLEAGTLTEEQKRHRAELAE---RKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE 612
            AY S SD E+ P    S++P ST + S+S P          VNSAPFV  +  +   N+  F+   S+  L  N+   + LAP  GP      E      + +  G ++ TG   E A ME ++F  Q+HT++   ++  AR+ V G                 PA P  I    +            + +KRK   + ++    ED G+E  DG WAP K++   +T  E GT+ E+QK  R E  E   RKA      DE+ D DR  E+K +HLLP R      A E  + F G  E DYQGR+WVEPP  L+P + DH  +LPKRCVH++TGH KGVQAIE FP  GHLLLS S+D T ++W VY+ER  +R Y GH+ AVR INFS DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  F+   S+N +  +D  SGE+VQEYNHHL AVN+VTF D+N RF STSDDKK+L+WEW I VPIKYI+EP MHSMPAVT  P+G F A QSL+N I ++  RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G +WHP+E S + SCGWDGLIK W+
Sbjct:    6 AYAS-SDDETAPL---STSPRSTDAPSLSLP---------VVNSAPFVALSDSQDQANKAAFLSAGSQTRLAVNLPVESTLAPFVGPHGGDSTELALTDPLRAGSGKEMVTG-VVEQAAMEDYSFEAQYHTYNQTLSRNIARNRVKGAPPSA------------PALPEEIVPDNIVATGEEDVFTRRNAKKRKNQTISKERAAAEDFGDEPTDGIWAPYKDKSKHLTDAEQGTMNEQQKALREEHQEAKRRKAEAKEEGDEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 607          
BLAST of EWM29450.1 vs. NCBI_GenBank
Match: gi|675178147|ref|XP_008897958.1| (hypothetical protein PPTG_05958 [Phytophthora parasitica INRA-310] >gi|568102181|gb|ETN16863.1| hypothetical protein PPTG_05958 [Phytophthora parasitica INRA-310] >gi|970655028|gb|KUF93250.1| Arrestin domain-containing protein A [Phytophthora nicotianae])

HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0
Identity = 296/628 (47.13%), Postives = 384/628 (61.15%), Query Frame = 0
Query:    7 AYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPA-LKTVMNRPGFIPPTSR-ELTTNVKAATLLAPIQGP------EHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFH---AQGYARDDVAGGIIGNVHNYMRKEGLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKG--VEED----EDLGEEE-DGPWAPAKEEPV-ITQLEAGTLTEEQKRHRAELAE---RKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE 612
            AY S SD E+ P    S++P ST + S+S P          VNSAPFV  +  +   N+  F+   S+  L  N+   + LAP  GP      E      + +  G ++ TG   E A ME ++F  Q+HT++   ++  AR+ V G                 PA P  I    +            + +KRK   + ++    ED G+E  DG WAP K++   +T  E GT+ E+QK  R E  E   RKA      DE+ D DR  E+K +HLLP R      A E  + F G  E DYQGR+WVEPP  L+P + DH  +LPKRCVH++TGH KGVQAIE FP  GHLLLS S+D T ++W VY+ER  +R Y GH+ AVR INFS DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  F+   S+N +  +D  SGE+VQEYNHHL AVN+VTF D+N RF STSDDKK+L+WEW I VPIKYI+EP MHSMPAVT  P+G F A QSL+N I ++  RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G +WHP+E S + SCGWDGLIK W+
Sbjct:    6 AYAS-SDDETAPL---STSPRSTDAPSLSLP---------VVNSAPFVALSDSQDQANKAAFLSAGSQTRLAINLPVESTLAPFVGPHVGDSTELALTDPLRAGNGKEMVTG-VVEQAAMEDYSFEAQYHTYNQTLSRNIARNRVKGAPPSA------------PALPGEIVPDNIVATGEEDVFTRRNAKKRKNQTISKERAAAEDFGDETTDGIWAPYKDKSKHLTDAEQGTMNEQQKALREEHQEAKRRKAEAKEEGDEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 607          
BLAST of EWM29450.1 vs. NCBI_GenBank
Match: gi|301099554|ref|XP_002898868.1| (pre-mRNA-processing factor, putative [Phytophthora infestans T30-4] >gi|262104574|gb|EEY62626.1| pre-mRNA-processing factor, putative [Phytophthora infestans T30-4])

HSP 1 Score: 542.732 bits (1397), Expect = 0.000e+0
Identity = 295/627 (47.05%), Postives = 380/627 (60.61%), Query Frame = 0
Query:    7 AYGSDSDTESTPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFV-NPALKTVMNRPGFIPPTS-RELTTNVKAATLLAPIQGPEHPFRREMDSM-----GGTKLATGGYKEDAVMEKWNFHEQFHTFH---AQGYARDDVAGGIIGNVHNYMRKEGLRDPAGPTAINAGRVTKPSGSTALEPVSRRKRKG--VEED----EDLGEEE-DGPWAPAKEEPV-ITQLEAGTLTEEQKRHRAELAE---RKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE 612
            AY S  D E+ P    S++P ST + S+S P          VNSAPFV +   +   N+  F+   S R L  N+   + LAP  GP+     E+  M     G  K    G  E A ME ++F  Q+HTF+   ++   R+ V G                 PA P  I    +  P         + +KRK   + ++    ED G+E  DG WAP K++    T  E   + E+QK  R E  E   RKA      DE+ D DR  ERK +HLLP R      A E  + F G  E DYQGR+WVEPP  L+P + DH  +LPKRCVH++TGH KGVQAIE FP  GHLLLS S+D T ++W VY+ER+ +R Y GH+AAVR INFS DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  F+   S+N +  +D  SGE+VQEYNHHL AVN+VTF D+N RF STSDDKK+L+WEW I VPIKYI+EPGMH+MPAVT  P+G F A QSL+N I ++  RD+FK+  KK F+GH  AG+ACQ  FSPN +++ SGDG+GKL FWD+K ++ L K  AHD GP +G +WHP+E S V SCGWDGLIK W+
Sbjct:   18 AYASSED-ETPP---HSTSPRSTDAPSLSLP---------VVNSAPFVAHSDSQDQANKTAFLSAGSQRRLAVNLPVESTLAPFMGPQSGDSTELALMDPLRAGSGKEVVTGVVEQADMEDYSFEAQYHTFNETLSRNIPRNRVKGAPPSA------------PALPGEIIPDNIVAPDEEDVFTRRNAKKRKNQIISKERAAAEDFGDENSDGIWAPYKDKNKHFTDAELDIMNEQQKALREEHQEAKRRKAEAKSEVDEEMDFDRMVERKTSHLLPARLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKFGHLLLSGSMDNTVRIWDVYNERKCQRVYEGHSAAVRGINFSNDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLKAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPGMHAMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKMNRKKTFRGHQNAGYACQIGFSPNGQFVMSGDGQGKLAFWDWKTSKMLQKLHAHDRGPTMGAIWHPLEPSKVVSCGWDGLIKYWD 619          
The following BLAST results are available for this feature:
BLAST of EWM29450.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553192563|ref|XP_005855598.1|0.000e+099.67pre-mRNA-processing factor 17 [Nannochloropsis gad... [more]
gi|585111986|gb|EWM29450.1|0.000e+0100.00pre-mrna-processing factor 17 [Nannochloropsis gad... [more]
gi|298712044|emb|CBJ32980.1|0.000e+051.95conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214704169|gb|OWZ16068.1|0.000e+047.68Pre-mRNA splicing factor [Phytophthora megakarya][more]
gi|695399075|ref|XP_009522168.1|0.000e+047.60putative pre-mRNA splicing factor [Phytophthora so... [more]
gi|570937120|gb|ETP02377.1|0.000e+047.61hypothetical protein F441_20540 [Phytophthora para... [more]
gi|567975817|gb|ETL26353.1|0.000e+047.13hypothetical protein L916_19960 [Phytophthora para... [more]
gi|567947113|gb|ETK72906.1|0.000e+047.13hypothetical protein L915_20087 [Phytophthora para... [more]
gi|675178147|ref|XP_008897958.1|0.000e+047.13hypothetical protein PPTG_05958 [Phytophthora para... [more]
gi|301099554|ref|XP_002898868.1|0.000e+047.05pre-mRNA-processing factor, putative [Phytophthora... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1221rna1221Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications