rna1180, rna1180 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1180
Unique Name	rna1180
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2611
Alignment location	CM002456.1:1413659..1415827 -

Link to JBrowse

Properties


Property Name	Value
Product	Armadillo-like helical
Orig transcript id	gnl\|cribi\|Naga_100287g2.6256.mrna
Orig protein id	gnl\|cribi\|Naga_100287g2.6256
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1413659..1415827 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100287g2	gene1136	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29500.1	cds1179	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1180	rna1180-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1413659..1415827-
coding sequence from alignment at CM002456.1:1413659..1415827-

mRNA sequence

>rna1180 ID=rna1180|Name=rna1180|organism=Nannochloropsis gaditana|type=mRNA|length=2611bp
GCGGACAAAACCGTCTTTCCATCGACGGGGTGTTCATTTCGGTCTCTTGG
GCTTTTGTTGAAAGCACGCTTGTTAAAAATCCCCTAACTTTCTGTTTCGT
TTCGGGATTTCGGAAGAGAGTCGCACAGGGTATGAAAGTCGCGGTCCATG
CTAGGTGTGCAACATAGCCTTCATATAACAAGTACCTGCTCACAATGTCG
ACGGAGTACAAAGAGATGGTGTGGCATCTCCTTTATCGCTCGACGCGTGC
AGACGAGAAGCAACAAGAAGGTGGCTCCCCTCGGAAGGATGTGTCTGCAG
GGGATGACGACAAATTGGACGGAAATCAGATGAAGACCGAGTTCGAGGAG
CAAGAGAACAGCAAGCAAGATCAAAATGTCGGTGATGCGAAACAGGAATC
GACGTGTGAGGTTCGGGCAGTGGTACGCGGCCCCATGGCCAGTGGATTAA
CGGATGAGACATTGGTGTCGATAGTGATCAACGCGGTCAAGAGCGGCCGC
ACCACGCAAGTCATCAACCTAGACGATTTCCCCGGAGACACAACGACCCT
GAAAGCGGACGAAGACAAGAACAATGCAGGGCCTGAGCCTGTCAAAAGCA
CGAGCACGAAAGGAGTGCCAAAGAAGATGGCGGCGCCTCACTCGACTTAT
ACAAATGCGAACCCTGGCAAGCACCATCGGCCCAGCTCTGCACGAAGAGC
GTGTTGCTTTTGCACCGCGAAGAAGCTAGCTTGTAGCGGAGGTCTCCCCT
GGTAAGTGATGTTTTTGGGCTCTCGGACCGAGACACGTGCGGTGCTGTGT
CTCCTCCCTCTGGTGATTCTGTCGGTTGCAGGCTTGATCCTCCCTCTTCT
TTTTCTGGTTTTCTCACAGTCACCTGTGCGCCACTCGTGGTATCACCTGC
GAGTACGTGGAACGGAAGCGCCGACAACAGCCTCACGTGCCCAAAGTCAT
CAAACGGGCCACACCGGGGGAGGAGCCCGTAACCGCCGCTGTTTTTCGGT
CTAGGCCCTCCGACCCCTCCTCTCTGTCCCCGTCAGACTCGTCGGCCATC
CCTGCACCCAGGCAATCTCCCCCACCCTCTTCCCAATCCGGTGGGCCCCG
GCGTGGCGCCAAGAGCACACCGGCACCCGCGACGGCGGCTCCGCTTCCCT
CCCCTTGGCCACCCGCGCCGGCCCCCCGAGGTCCCTCGCAACCTATGCTA
CCATCTGCTCCCATGGCGGAAACAGAACGCGCGTACTGGCATGCCATGAA
CCCGTCCATGTTTCCCCCCTTTGGGATGGGCGGGGGAGGGGGGGGGAGTC
CCCCCCCACCCTATGCATTTCGCGGCGGAGCGAGCGCACGGACTTGCCAT
GCCGGCGTCCAACTCGGGCACGTTCAGGATGAGCATGGCTTCCCCCCCTG
GCGCCAACGCCGCCGGTGCCCATACGGGCCCTCTGGCCAATACCAGCGGC
TACACCCATACCAACTGGCAGCCCTCGCCCGGCCTTGGCATGCCTGGGGC
CGGCCCTGGAGATTCCTGGGCCCCTCTCCACCCCGCTTGCAATGACATCC
GCTTCCCACAAATGGGGACCAACGGAGCGGGCGCCATGTGGCAGGTTCCT
TACCCCAACTATCCCCCTGCGCAATATTTCCAGGCTGCGCCGCCCCAGGA
CGAAATGCCGGTCCCTCGGGAGGTCAGGATGCAGTCGATGCCACCAGGTC
CGGACAGATTGGGAGCCCTGGCAGCGGTGTCGGCGGAAATGGGGGGGAAT
GGACAGGCCAAGGGTCCTGTTGGAGGGCAAAGCACCGACGCTGGTGACGT
GGATCGTGGCGCGAAAGGAGAGGAAGGGGATCGAGTGAAGGAGGGGCAAG
GGGCTGGTGAGAATGGATCTCGGCGAGTGAGCATCGAAGGGAACTTGGCC
TCAAGCAGAAAACGACCGCTCCACGAGGAAGGGGAGGACATAGACGAGGG
AGGAAGGCACAGGGAAAGTACGCAATTGTGCGATGACGGGTCGAAGGGGG
TTGGGAAGATGGGAAGGCGGGACGAGGCGAGCAGGAAAGGCCATGAAAAG
GGTGAGTAGGGTAGGAAAGCGATACAGACTCGACGGACGCAACATGGCTG
AAGCGGTAATCGAACAGGTGAGGGGGAAGAAACCAGCATCGCACCAGCCA
ACCAGGAGAAGAAGGGAACAGTGCAGGGATGTACTGCAGCATGAGCAGAG
GCAGCAACCGGTAATCCTCGCGTCCGAGCTATCAGGCTGACATGGTAGGC
TTGTCCAGCGACATTGATAGGTATGCGCGTCCTGGCATCTGTCCTTCATC
ACATCAGATGTATACGAGCTTCGGACACAAATAAAAAGAAAAACCGACTA
AATTTTCGGTGGGACTACACTTCTTGTGCATTTGCAGGATCACAAAAATG
ACGGGGCGCTGGCTCTTATGCGCTGAACGGCGAACAAAACATCATTTAAA
CACCACGCTTCCTTGCAGAATAAAGTCCTTGTGAGAAAATTATACAAAAA
GTTGCAGTTTCAACACATTGGAATTTCAAAGCGCAACATTCTCGTGCAAC
ATCTTGCAGAAAGTCATAAGTCGAAAGCTGCAGAGAGCAATCATCATTTT
TCATGCTGCCG

protein sequence of rna1180

>rna1180-protein ID=rna1180-protein|Name=rna1180|organism=Nannochloropsis gaditana|type=polypeptide|length=581bp
MTFLAVGPFTTVLLHMFLYQAKIRGKTMKPHPPLRKVTPGQRPSFLLCSI
SLLVFLIVSFAAEQPAAKISPQEEENVFVATTEWQAIPPGASVPPGLHVK
LDLSTGERLGKLMDGPERQALRPAGQRKEESALQATDVAGFKSNKTGAKG
ILDSVVIKNTPEETLEASQGPPLSRRGTMLKVLSGLPPQERASMGIDSLL
ASRPRAGEALGEEVVEGEEREEERAFWKQVETLWAERQDLLLQAYENMLK
PAEELGRLIGVLKEGGEEEVMRALMELEDWLSDVDMAQDFYTLGGWPLLV
SKLGWEGGREGGREVQWRAAWVVGNAVKNDRHFQAWVLEGGKEGGASALT
RLLTICREGGTEAWGEGEEEEELLRKAVYAVTSAARGNPAVQAKLVEEGG
LEVLGHLLHSSVPPSPGSSHQRKGQRRALCLKLIAFAQDLALEAKQAVAA
ALEVAEARHPPSIPPSLPPSLLAGVTSPAWCEGILGLLEEVVGGEGGREA
RALEGVLEAMQLLHVDCVRQGRWEEGGREVERLLRRAREVVEEEDWKEGV
DREYWEDLVNLIEALLEETREGGRAGGREEL

mRNA from alignment at CM002456.1:1413659..1415827-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1180 ID=rna1180|Name=rna1180|organism=Nannochloropsis gaditana|type=mRNA|length=2169bp|location=Sequence derived from alignment at CM002456.1:1413659..1415827- (Nannochloropsis gaditana)
AAAACGACGTGCGCGTGGGTAAAGGACGAAAAATCAGGGTTAGCAGTGGT
ACAAAAAGATGTACCAACTCTTCGATTTTTTTCCTGCCAGTATTTCGTGG
CGTGAAGCGCTGAGGAAGGCAATAAGGGGCTTTCCCTTCCTCCCTTTCCT
TCTCGTTCTATACCCCTCTTTGCATGACTTTTCTCGCTGTAGGACCATTT
ACAACCGTTCTTCTCCACATGTTTCTTTACCAAGCCAAAATCAGGGGCAA
AACGATGAAGCCTCATCCTCCATTGCGGAAAGTTACACCAGGCCAGCGTC
CCTCCTTCCTCCTATGCTCCATCTCCCTTCTAGTTTTCCTGATCGTTTCT
TTTGCAGCGGAGCAGCCCGCCGCCAAAATATCGCCACAGGAAGAGGAAAA
CGTCTTTGTGGCAACTACAGAATGGCAGGCCATCCCTCCTGGGGCCTCCG
TACCGCCCGGTTTGCACGTTAAACTGGATCTTAGCACGGGGGAGAGGTTA
GGAAAACTGATGGACGGACCAGAAAGACAAGCCTTAAGGCCGGCAGGACA
GAGAAAGGAGGAATCTGCTCTCCAAGCCACGGATGTTGCGGGTTTTAAAA
GTAACAAGACGGGCGCAAAAGGAATTCTGGACTCTGTCGTGATCAAAAAC
ACTCCCGAGGAGACCCTTGAGGCCTCACAAGGTCCTCCTTTAAGCCGTCG
AGGGACCATGTTAAAAGTGCTGAGCGGCCTCCCGCCTCAAGAACGAGCGA
GCATGGGGATCGACTCTCTATTGGCCTCCCGTCCGCGGGCTGGCGAAGCT
TTGGGGGAGGAAGTGGTGGAAGGGGAGGAAAGGGAGGAGGAGAGGGCATT
CTGGAAGCAGGTGGAGACTCTGTGGGCGGAACGGCAAGATTTGCTCCTAC
AAGCCTACGAGAACATGCTGAAGCCGGCGGAGGAACTGGGGCGGTTGATC
GGGGTCTTGAAGGAGGGCGGGGAGGAGGAAGTGATGCGGGCGTTGATGGA
ACTGGAAGATTGGTTGTCAGACGTGGACATGGCCCAAGACTTTTATACCT
TAGGGGGGTGGCCGCTGTTGGTGAGCAAGTTAGGGTGGGAAGGAGGGAGG
GAGGGAGGGAGGGAGGTCCAGTGGCGAGCCGCTTGGGTGGTGGGAAATGC
GGTGAAGAACGACCGGCATTTCCAGGCGTGGGTGTTGGAGGGAGGGAAGG
AGGGAGGCGCGTCGGCCCTGACGCGTCTGTTGACAATTTGCCGGGAGGGA
GGGACCGAAGCCTGGGGCGAAGGAGAGGAGGAGGAAGAGCTTTTGCGGAA
AGCGGTATACGCCGTCACCTCGGCAGCACGTGGGAACCCTGCGGTGCAAG
CCAAGTTGGTGGAGGAAGGGGGGTTGGAGGTGCTAGGTCACCTCCTCCAT
TCCTCCGTTCCGCCCTCCCCCGGTTCTTCCCACCAAAGAAAAGGGCAACG
GCGGGCGCTGTGTCTGAAGCTGATTGCCTTCGCGCAGGACCTTGCCCTGG
AAGCAAAGCAGGCAGTGGCGGCAGCGTTGGAGGTGGCCGAGGCTCGTCAC
CCTCCCTCCATCCCGCCCTCCCTCCCACCTTCCCTCCTTGCCGGCGTCAC
TTCCCCCGCCTGGTGCGAGGGAATCTTGGGTCTGCTGGAGGAGGTGGTGG
GGGGGGAGGGAGGTAGGGAGGCACGGGCGCTGGAAGGGGTCCTGGAGGCG
ATGCAGCTCTTGCACGTCGACTGCGTCCGACAGGGTCGTTGGGAGGAGGG
AGGGAGGGAGGTGGAGAGGTTGCTGCGGCGGGCGAGGGAGGTGGTGGAGG
AGGAGGACTGGAAGGAGGGTGTGGACCGGGAATATTGGGAGGACCTGGTG
AATCTGATTGAGGCGCTGCTGGAGGAGACGAGGGAGGGAGGGCGGGCGGG
CGGGAGGGAGGAGCTGTAGGGAAAGGGGTGGCAATGTGGGAAGGGATGGA
GAACACCCGTCAAATGTGCGCACGGGCGCCAAAGCGGCATGCCCACGGCG
ACGCGGCTGCTGGTGGCCTGTCTGACAAACAATGCTTATTGATGACTGGG
TGGTCCGCCACCTGATTTTTTTAAACATCGCTGAATTCTCCTGCACGTGA
CTCTCGACCCCATCTCTGTCGTCACGTTTCCTACCCCCATCTCCGCCATG
TTTCCTAACATTTCCCTCC

Coding sequence (CDS) from alignment at CM002456.1:1413659..1415827-

>rna1180 ID=rna1180|Name=rna1180|organism=Nannochloropsis gaditana|type=CDS|length=1746bp|location=Sequence derived from alignment at CM002456.1:1413659..1415827- (Nannochloropsis gaditana)
ATGACTTTTCTCGCTGTAGGACCATTTACAACCGTTCTTCTCCACATGTT
TCTTTACCAAGCCAAAATCAGGGGCAAAACGATGAAGCCTCATCCTCCAT
TGCGGAAAGTTACACCAGGCCAGCGTCCCTCCTTCCTCCTATGCTCCATC
TCCCTTCTAGTTTTCCTGATCGTTTCTTTTGCAGCGGAGCAGCCCGCCGC
CAAAATATCGCCACAGGAAGAGGAAAACGTCTTTGTGGCAACTACAGAAT
GGCAGGCCATCCCTCCTGGGGCCTCCGTACCGCCCGGTTTGCACGTTAAA
CTGGATCTTAGCACGGGGGAGAGGTTAGGAAAACTGATGGACGGACCAGA
AAGACAAGCCTTAAGGCCGGCAGGACAGAGAAAGGAGGAATCTGCTCTCC
AAGCCACGGATGTTGCGGGTTTTAAAAGTAACAAGACGGGCGCAAAAGGA
ATTCTGGACTCTGTCGTGATCAAAAACACTCCCGAGGAGACCCTTGAGGC
CTCACAAGGTCCTCCTTTAAGCCGTCGAGGGACCATGTTAAAAGTGCTGA
GCGGCCTCCCGCCTCAAGAACGAGCGAGCATGGGGATCGACTCTCTATTG
GCCTCCCGTCCGCGGGCTGGCGAAGCTTTGGGGGAGGAAGTGGTGGAAGG
GGAGGAAAGGGAGGAGGAGAGGGCATTCTGGAAGCAGGTGGAGACTCTGT
GGGCGGAACGGCAAGATTTGCTCCTACAAGCCTACGAGAACATGCTGAAG
CCGGCGGAGGAACTGGGGCGGTTGATCGGGGTCTTGAAGGAGGGCGGGGA
GGAGGAAGTGATGCGGGCGTTGATGGAACTGGAAGATTGGTTGTCAGACG
TGGACATGGCCCAAGACTTTTATACCTTAGGGGGGTGGCCGCTGTTGGTG
AGCAAGTTAGGGTGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGTCCAGTG
GCGAGCCGCTTGGGTGGTGGGAAATGCGGTGAAGAACGACCGGCATTTCC
AGGCGTGGGTGTTGGAGGGAGGGAAGGAGGGAGGCGCGTCGGCCCTGACG
CGTCTGTTGACAATTTGCCGGGAGGGAGGGACCGAAGCCTGGGGCGAAGG
AGAGGAGGAGGAAGAGCTTTTGCGGAAAGCGGTATACGCCGTCACCTCGG
CAGCACGTGGGAACCCTGCGGTGCAAGCCAAGTTGGTGGAGGAAGGGGGG
TTGGAGGTGCTAGGTCACCTCCTCCATTCCTCCGTTCCGCCCTCCCCCGG
TTCTTCCCACCAAAGAAAAGGGCAACGGCGGGCGCTGTGTCTGAAGCTGA
TTGCCTTCGCGCAGGACCTTGCCCTGGAAGCAAAGCAGGCAGTGGCGGCA
GCGTTGGAGGTGGCCGAGGCTCGTCACCCTCCCTCCATCCCGCCCTCCCT
CCCACCTTCCCTCCTTGCCGGCGTCACTTCCCCCGCCTGGTGCGAGGGAA
TCTTGGGTCTGCTGGAGGAGGTGGTGGGGGGGGAGGGAGGTAGGGAGGCA
CGGGCGCTGGAAGGGGTCCTGGAGGCGATGCAGCTCTTGCACGTCGACTG
CGTCCGACAGGGTCGTTGGGAGGAGGGAGGGAGGGAGGTGGAGAGGTTGC
TGCGGCGGGCGAGGGAGGTGGTGGAGGAGGAGGACTGGAAGGAGGGTGTG
GACCGGGAATATTGGGAGGACCTGGTGAATCTGATTGAGGCGCTGCTGGA
GGAGACGAGGGAGGGAGGGCGGGCGGGCGGGAGGGAGGAGCTGTAG

Synonyms

Publications