rna1161, rna1161 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1161
Unique Name	rna1161
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	237
Alignment location	CM002456.1:1358533..1361930 -

Link to JBrowse

Properties


Property Name	Value
Product	Pentatricopeptide repeat contining protein
Orig transcript id	gnl\|cribi\|Naga_100006g5.8652.mrna
Orig protein id	gnl\|cribi\|Naga_100006g5.8652
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1358533..1361930 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g5	gene1118	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29563.1	cds1160	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1161	rna1161-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1358533..1361930-
coding sequence from alignment at CM002456.1:1358533..1361930-

mRNA sequence

>rna1161 ID=rna1161|Name=rna1161|organism=Nannochloropsis gaditana|type=mRNA|length=237bp
ATGATTCTGTGCGGGGGCAATTGTCAGAGGCGTCAACGGCCAGAATTTCA
AGCTTTGGAAATTGAGTATGTTATTAAATCTCATGAGTCCCTGATCAATA
GGGCATGTCCACAGGACATTGCACGAGTTTTTTGTCAAAAAGCCCCCAAG
TTTAGATGTGGCTCATACGAGTCTTCTGCAAAAGCTAAGCTTTTCAAGGC
GTTTTTAAAAGGATGTGTAAGCATTAGACGAGGTTGA

protein sequence of rna1161

>rna1161-protein ID=rna1161-protein|Name=rna1161|organism=Nannochloropsis gaditana|type=polypeptide|length=952bp
MVNMRSNEAKRSPRSNLRGIFNLGRDARISGLLALLTSSWFLDGVAFHSP
SFHSCSRGHARCFTTQPAKKVTMEMVTGHGSSSPIPPARAHPPKRLPGRR
PPPSTQHRNLHGGGGLWEINNEINFWSKQRNFDQVLALAQKVETEGLRPN
IYTFHALLNAAIACRRGEAETLAVWQKMTEEHGLRPTVVTYNILLKRFFG
RGTPAAQRQALAVLNEMRQGGVEPDVLTFNELINICVEGGDMKAAAGLMQ
AMVHRGMAPDTRTYTTLIKGHGLKGNLMDAFETVKTMRAQALPLSTYSCN
VLADACIRCGQPSRALALYREFEAEADEAGGEAGRTLDLKSFNIMIKAYR
GLGHVEGARAALHALERRGFKADTVTYNTLVDLHCKAQNLGGARSLIEKM
KENAVPVTHQTIHPLVQEEIIAHGVSWEEALDLATALLGAHGLKQNDVTI
CTVMEAMLSLERPRDAIQVFVRSFFAPREGVSPAEGGKGRERSERGKEAM
GRVPRPRVIPSLVAFNGLIKAYRDYVVGLDMEGEGGDMAPLPLLVFPPNG
GSPLWTQATTPRAVLEAAVHLPSYLQTLAAITPTATAPSPSSSSPHSRAP
GAARRSFGTSHLFGGPDSITYNILMDFAGELGDVEALETIHAARNAAGFA
IDHYVIHSYMKAHAVRGNLAGVTEAKEKMEALRVPANERTFSVLVLSLLR
CGQVEKAELLLKNALARQTYVHDSLFVAFIQHYTSAPSSSQQPSAPEKPT
SRLVAAREIFEAFKARRNPGAPMPAAPQQSHGKWAGAVWSAWMAALARKG
DLDGVLAAWKEMTLCPSLGVRPTRSTYAQVIRAACVAGEVETALQWVQNM
RGKKWVPDVRVYNGLIYACLEKEMGKADRKGSKGGGGQRLLVEVLEMMER
DGVQPNAITLRAKEGVMRVLASRMRAVSDTMVGKLKMLALSKQWAERTEG
KG

mRNA from alignment at CM002456.1:1358533..1361930-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1161 ID=rna1161|Name=rna1161|organism=Nannochloropsis gaditana|type=mRNA|length=3398bp|location=Sequence derived from alignment at CM002456.1:1358533..1361930- (Nannochloropsis gaditana)
TGACCGGGCCCTGAATGTTGACCGCGGAGAATGTGGCATACCAATTGACT
TTTCGTCATGTGTTACTAACTGGGAAAAATATCATTCACATTGTCAGGGG
AAAGTTTGTTGCCATTGCCCACTGTTCGGTGAGAGACATCACGTGCTGTA
AAAGCTGGCTTTGCTCGCGCTAGCAGCGTCTCATAAGAGGCTCAGGTTGG
CCCGGAGGGCCGTGCCCTATTAGTCTGCATGGTCAACATGAGGTCAAACG
AGGCAAAGCGGAGCCCGCGGTCGAATTTACGAGGAATATTCAATCTAGGC
AGAGATGCACGGATAAGCGGACTACTGGCCTTGCTCACCTCCAGCTGGTT
CCTTGACGGTGTGGCATTCCATTCGCCTTCTTTTCATTCCTGCAGTAGGG
GGCATGCCAGATGTTTTACGACACAGCCAGCTAAAAAGGTGACAATGGAG
ATGGTGACCGGGCATGGCAGCTCGAGCCCTATCCCTCCCGCTCGTGCCCA
CCCTCCCAAGCGTCTCCCAGGTCGTCGTCCCCCGCCCTCGACACAGCACC
GCAACCTGCATGGTGGGGGTGGACTGTGGGAGATCAACAATGAGATTAAT
TTCTGGAGCAAACAACGCAATTTCGACCAGGTCCTTGCCCTGGCTCAAAA
AGTGGAAACGGAAGGGCTGCGCCCGAACATCTACACGTTCCACGCCCTGT
TGAACGCGGCAATTGCCTGTCGTCGGGGCGAGGCGGAAACGCTGGCCGTG
TGGCAGAAAATGACAGAGGAACACGGGCTACGACCTACTGTGGTCACGTA
CAACATTTTGTTGAAGCGCTTTTTTGGCAGGGGCACTCCGGCGGCCCAAC
GCCAGGCCCTCGCGGTCCTGAACGAAATGCGGCAAGGGGGCGTGGAGCCG
GACGTGTTGACCTTTAACGAGTTGATCAACATTTGTGTGGAAGGTGGGGA
CATGAAGGCAGCCGCGGGGTTGATGCAAGCCATGGTGCACCGGGGCATGG
CCCCCGATACCCGGACGTACACCACCCTGATCAAAGGACACGGCCTAAAA
GGGAATTTGATGGACGCTTTCGAGACGGTCAAGACCATGCGCGCCCAGGC
ATTGCCCCTGAGCACGTATTCCTGTAACGTGTTGGCGGATGCGTGCATCC
GGTGCGGCCAACCGTCCCGGGCGCTCGCCCTTTATCGGGAATTCGAAGCC
GAGGCCGACGAGGCCGGGGGCGAGGCCGGGCGGACGTTGGACTTGAAAAG
TTTCAACATCATGATCAAGGCGTACCGAGGGCTGGGGCACGTCGAGGGCG
CCCGGGCGGCCTTGCATGCCCTCGAACGTCGAGGGTTCAAAGCCGACACA
GTGACCTACAACACGCTCGTGGACCTCCACTGTAAGGCCCAAAACCTGGG
GGGCGCCCGATCCCTGATCGAAAAAATGAAGGAGAATGCCGTACCGGTCA
CGCACCAGACGATTCATCCCCTTGTGCAAGAGGAGATCATCGCCCACGGG
GTGTCGTGGGAGGAAGCCCTGGACCTGGCCACGGCGTTGCTCGGTGCGCA
TGGCCTCAAGCAGAACGACGTGACCATTTGCACGGTCATGGAAGCCATGT
TGAGCCTGGAGCGGCCCCGGGACGCGATCCAAGTCTTTGTGCGAAGCTTT
TTTGCGCCGAGGGAAGGTGTGAGTCCGGCGGAGGGAGGGAAGGGGAGAGA
GCGGTCGGAAAGAGGAAAAGAGGCTATGGGCCGAGTGCCCCGTCCGCGGG
TCATTCCCAGCCTAGTGGCTTTCAACGGACTGATCAAGGCCTACCGCGAT
TACGTGGTAGGTCTGGACATGGAGGGAGAGGGGGGGGACATGGCCCCCCT
CCCCCTCCTTGTTTTCCCTCCCAACGGCGGTTCGCCCCTGTGGACGCAAG
CCACCACCCCGCGGGCTGTCTTGGAGGCCGCTGTACACCTCCCTTCCTAT
TTGCAGACCTTGGCTGCCATTACTCCTACAGCAACGGCTCCGTCTCCTTC
GTCTTCCTCGCCACATTCCAGAGCCCCAGGCGCCGCGCGCCGCTCTTTCG
GCACCTCTCATCTCTTTGGCGGCCCGGACTCCATCACGTACAACATATTG
ATGGATTTCGCGGGAGAGCTCGGTGACGTTGAGGCCTTGGAAACAATCCA
CGCGGCCCGGAACGCCGCAGGGTTCGCCATTGACCATTACGTCATCCATT
CGTACATGAAGGCGCATGCCGTACGGGGGAACTTGGCCGGGGTGACCGAA
GCGAAGGAGAAAATGGAAGCTTTGCGAGTACCAGCCAATGAAAGGACTTT
CAGTGTCTTGGTCTTGTCGCTTCTGCGGTGTGGGCAAGTGGAGAAGGCGG
AGCTGCTCCTCAAGAACGCGCTGGCTCGACAGACCTACGTCCATGACTCG
CTCTTCGTGGCATTTATACAGCACTACACGTCTGCCCCTTCGTCTTCCCA
GCAGCCCTCGGCACCGGAGAAGCCAACCTCCCGCCTGGTGGCGGCGCGGG
AGATTTTTGAAGCTTTCAAAGCTCGTCGCAATCCGGGGGCACCGATGCCG
GCAGCGCCCCAACAGTCGCACGGAAAATGGGCGGGTGCGGTCTGGAGCGC
CTGGATGGCCGCCTTGGCCCGCAAGGGGGACCTGGACGGGGTCCTGGCGG
CGTGGAAGGAGATGACGCTATGTCCTTCCTTGGGCGTGCGGCCGACCCGA
AGCACCTACGCGCAAGTTATCCGGGCCGCCTGTGTGGCGGGGGAGGTAGA
GACGGCATTGCAATGGGTGCAAAATATGCGGGGAAAAAAGTGGGTGCCGG
ACGTGCGCGTGTACAACGGCTTGATTTACGCCTGCCTAGAGAAAGAGATG
GGTAAAGCGGACAGGAAAGGGAGCAAGGGGGGCGGAGGCCAACGACTGCT
GGTAGAGGTTCTTGAGATGATGGAAAGGGACGGAGTGCAGCCTAACGCCA
TCACCTTGAGAGCTAAGGAGGGAGTCATGCGCGTGCTTGCCTCACGGATG
CGGGCCGTGTCGGACACGATGGTTGGAAAGTTAAAAATGCTGGCTTTGAG
CAAGCAGTGGGCCGAGAGGACCGAGGGAAAAGGGTAAATGAAGGGAAAGA
GAACCTTCACTTACCTGCTTGTAATTTGAGGTGCGTAGAAAAGCAATGCT
AGTCAACTGTAATGAATAAATCGATGCATTCCGTACATGGCCAATGCTTG
TACATTGTACGCGATATTATCATCATTTGATACGTGTCTTCAAGCTATTT
ACGATACAAATATTTTTTTCGCGCGATGTATTAGCCTTTTCGATCAACCT
CGTCTAATGCTTACACATCCTTTTAAAAACGCCTTGAAAAGCTTAGCTTT
TGCAGAAGACTCGTATGAGCCACATCTAAACTTGGGGGCTTTTTGACA

Coding sequence (CDS) from alignment at CM002456.1:1358533..1361930-

>rna1161 ID=rna1161|Name=rna1161|organism=Nannochloropsis gaditana|type=CDS|length=2859bp|location=Sequence derived from alignment at CM002456.1:1358533..1361930- (Nannochloropsis gaditana)
ATGGTCAACATGAGGTCAAACGAGGCAAAGCGGAGCCCGCGGTCGAATTT
ACGAGGAATATTCAATCTAGGCAGAGATGCACGGATAAGCGGACTACTGG
CCTTGCTCACCTCCAGCTGGTTCCTTGACGGTGTGGCATTCCATTCGCCT
TCTTTTCATTCCTGCAGTAGGGGGCATGCCAGATGTTTTACGACACAGCC
AGCTAAAAAGGTGACAATGGAGATGGTGACCGGGCATGGCAGCTCGAGCC
CTATCCCTCCCGCTCGTGCCCACCCTCCCAAGCGTCTCCCAGGTCGTCGT
CCCCCGCCCTCGACACAGCACCGCAACCTGCATGGTGGGGGTGGACTGTG
GGAGATCAACAATGAGATTAATTTCTGGAGCAAACAACGCAATTTCGACC
AGGTCCTTGCCCTGGCTCAAAAAGTGGAAACGGAAGGGCTGCGCCCGAAC
ATCTACACGTTCCACGCCCTGTTGAACGCGGCAATTGCCTGTCGTCGGGG
CGAGGCGGAAACGCTGGCCGTGTGGCAGAAAATGACAGAGGAACACGGGC
TACGACCTACTGTGGTCACGTACAACATTTTGTTGAAGCGCTTTTTTGGC
AGGGGCACTCCGGCGGCCCAACGCCAGGCCCTCGCGGTCCTGAACGAAAT
GCGGCAAGGGGGCGTGGAGCCGGACGTGTTGACCTTTAACGAGTTGATCA
ACATTTGTGTGGAAGGTGGGGACATGAAGGCAGCCGCGGGGTTGATGCAA
GCCATGGTGCACCGGGGCATGGCCCCCGATACCCGGACGTACACCACCCT
GATCAAAGGACACGGCCTAAAAGGGAATTTGATGGACGCTTTCGAGACGG
TCAAGACCATGCGCGCCCAGGCATTGCCCCTGAGCACGTATTCCTGTAAC
GTGTTGGCGGATGCGTGCATCCGGTGCGGCCAACCGTCCCGGGCGCTCGC
CCTTTATCGGGAATTCGAAGCCGAGGCCGACGAGGCCGGGGGCGAGGCCG
GGCGGACGTTGGACTTGAAAAGTTTCAACATCATGATCAAGGCGTACCGA
GGGCTGGGGCACGTCGAGGGCGCCCGGGCGGCCTTGCATGCCCTCGAACG
TCGAGGGTTCAAAGCCGACACAGTGACCTACAACACGCTCGTGGACCTCC
ACTGTAAGGCCCAAAACCTGGGGGGCGCCCGATCCCTGATCGAAAAAATG
AAGGAGAATGCCGTACCGGTCACGCACCAGACGATTCATCCCCTTGTGCA
AGAGGAGATCATCGCCCACGGGGTGTCGTGGGAGGAAGCCCTGGACCTGG
CCACGGCGTTGCTCGGTGCGCATGGCCTCAAGCAGAACGACGTGACCATT
TGCACGGTCATGGAAGCCATGTTGAGCCTGGAGCGGCCCCGGGACGCGAT
CCAAGTCTTTGTGCGAAGCTTTTTTGCGCCGAGGGAAGGTGTGAGTCCGG
CGGAGGGAGGGAAGGGGAGAGAGCGGTCGGAAAGAGGAAAAGAGGCTATG
GGCCGAGTGCCCCGTCCGCGGGTCATTCCCAGCCTAGTGGCTTTCAACGG
ACTGATCAAGGCCTACCGCGATTACGTGGTAGGTCTGGACATGGAGGGAG
AGGGGGGGGACATGGCCCCCCTCCCCCTCCTTGTTTTCCCTCCCAACGGC
GGTTCGCCCCTGTGGACGCAAGCCACCACCCCGCGGGCTGTCTTGGAGGC
CGCTGTACACCTCCCTTCCTATTTGCAGACCTTGGCTGCCATTACTCCTA
CAGCAACGGCTCCGTCTCCTTCGTCTTCCTCGCCACATTCCAGAGCCCCA
GGCGCCGCGCGCCGCTCTTTCGGCACCTCTCATCTCTTTGGCGGCCCGGA
CTCCATCACGTACAACATATTGATGGATTTCGCGGGAGAGCTCGGTGACG
TTGAGGCCTTGGAAACAATCCACGCGGCCCGGAACGCCGCAGGGTTCGCC
ATTGACCATTACGTCATCCATTCGTACATGAAGGCGCATGCCGTACGGGG
GAACTTGGCCGGGGTGACCGAAGCGAAGGAGAAAATGGAAGCTTTGCGAG
TACCAGCCAATGAAAGGACTTTCAGTGTCTTGGTCTTGTCGCTTCTGCGG
TGTGGGCAAGTGGAGAAGGCGGAGCTGCTCCTCAAGAACGCGCTGGCTCG
ACAGACCTACGTCCATGACTCGCTCTTCGTGGCATTTATACAGCACTACA
CGTCTGCCCCTTCGTCTTCCCAGCAGCCCTCGGCACCGGAGAAGCCAACC
TCCCGCCTGGTGGCGGCGCGGGAGATTTTTGAAGCTTTCAAAGCTCGTCG
CAATCCGGGGGCACCGATGCCGGCAGCGCCCCAACAGTCGCACGGAAAAT
GGGCGGGTGCGGTCTGGAGCGCCTGGATGGCCGCCTTGGCCCGCAAGGGG
GACCTGGACGGGGTCCTGGCGGCGTGGAAGGAGATGACGCTATGTCCTTC
CTTGGGCGTGCGGCCGACCCGAAGCACCTACGCGCAAGTTATCCGGGCCG
CCTGTGTGGCGGGGGAGGTAGAGACGGCATTGCAATGGGTGCAAAATATG
CGGGGAAAAAAGTGGGTGCCGGACGTGCGCGTGTACAACGGCTTGATTTA
CGCCTGCCTAGAGAAAGAGATGGGTAAAGCGGACAGGAAAGGGAGCAAGG
GGGGCGGAGGCCAACGACTGCTGGTAGAGGTTCTTGAGATGATGGAAAGG
GACGGAGTGCAGCCTAACGCCATCACCTTGAGAGCTAAGGAGGGAGTCAT
GCGCGTGCTTGCCTCACGGATGCGGGCCGTGTCGGACACGATGGTTGGAA
AGTTAAAAATGCTGGCTTTGAGCAAGCAGTGGGCCGAGAGGACCGAGGGA
AAAGGGTAA

Synonyms

Publications