rna1100, rna1100 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1100
Unique Name	rna1100
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	237
Alignment location	CM002456.1:1177615..1180694 -

Link to JBrowse

Properties


Property Name	Value
Product	ccr4-not transcription complex subunit 3
Orig transcript id	gnl\|cribi\|Naga_100006g67.8626.mrna
Orig protein id	gnl\|cribi\|Naga_100006g67.8626
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1177615..1180694 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g67	gene1060	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29537.1	cds1099	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1100	rna1100-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1177615..1180694-
coding sequence from alignment at CM002456.1:1177615..1180694-

mRNA sequence

>rna1100 ID=rna1100|Name=rna1100|organism=Nannochloropsis gaditana|type=mRNA|length=237bp
ATGCCGGCGCCATTATGGTGGCTCGGCTTAGGCATCGGTCCAGGGACGGA
AAGGAGGGTAAAATGGCAGCAAAGCGTGGTGGTGATCGTGATAACCGGTA
TTTTAAATATTTGCATCTGTTTGTTTGTCCAAGACATGTCTGTGTTGGTT
GAGGATAACGCTTTCGTTTCCCTTGGTTGCCGCATTATGTCAAGCATCAT
GAGCGTGCAGCAAGGCAAGAAGCGCTCAACTTTGTAG

protein sequence of rna1100

>rna1100-protein ID=rna1100-protein|Name=rna1100|organism=Nannochloropsis gaditana|type=polypeptide|length=828bp
MADKRKLQTEIDRILKKVDEGVELFDEIWKKVYSARDPNHKEKYEQDLKK
EIKKLQRHRDQIKTWLGQNDIKDKKNLTEARKLIESKMEQFKVCEKEAKT
KNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLM
AGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCK
EDIEFFVEAHEDGQYESQYDDDMEMYDILELDEAPIQITDLLSQGGGPKK
SPRDGEEGEEDGSLGGMSGGGEEDDVDRSTSSKTSGSSNGASKEKRGTSA
QAGAVGAVGGGAGGTPELKGIGRPGKVQFNSTPTVVRAVGGAAPRPGLGG
NKATSVGSTGTTGPRLTASAVVAGTGPSPGKPTAAQALRGNLAAAVVGGG
TGVPDGATAGTTPATAAAILARDKTAQSAMQPPQQPQQTPQQPLPSQRLL
PLRQQQALAAQQQQLAQQQAAQQQALMERQKNLQQQQQQQQQQQQQQQQM
TVRPSAFVPPASAASKSSPLPQGSSSPMTGSQQSTPPLRSAPAPSTTQQQ
QQQGTAPHRGSLGAEQPIQQQQQQQQQQQQQQQQQHFQQQQPQNKQQYQQ
QLHREQPPQQQEQQQQEQNKQQSQQRQQLAQGPLTQPAEHAFGGGPGSAV
ATGGGGGEPAMDATAAASFSSNASRTAPETLQMQLTYLSRAMQYIPTQHD
AERPKQYFPRNPYPVHSSFPLVPAPIFDSPSIFKKLGPDTLFFIFYYQQG
TYQQYLAAKELKEQSWRFHKKYMTWFQRHEEPQVTTEDYEQGTYVYFDCE
SGWCTRIKQAFRFDYSALENDEPRGGEN

mRNA from alignment at CM002456.1:1177615..1180694-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1100 ID=rna1100|Name=rna1100|organism=Nannochloropsis gaditana|type=mRNA|length=3080bp|location=Sequence derived from alignment at CM002456.1:1177615..1180694- (Nannochloropsis gaditana)
AGCTCTCCTATCTATGCGATGCATGGTGGGTCGCGGAGGCAAGTGCTCTG
GATCAACGCCATGGCTCTCGCCTGGATACTGGCTTTCTTTCTTGATGACC
TTCCGCCTTGAACGCAATGCGACACTCCACTCATACCAAGCTGCCACCCG
ACAGGCTCAGAAGGCATAATATAAGAGCCCCTGGACCGCCACATCAATAA
CCACGGTGTGCACTGAGAAGAGTGAGCGCCCGCCACACATTTATTGGCAC
AATCGACGCGCGCGCCCAGGTGGGGATAGCGTATCGAGGGGGAGGAAACA
AGAGTGGGCTGACCAGGCTCGTGGGCGAAAAAATCGTACAGTGTCGTGAG
ATTGGTCACAGTGCTCTCATTCAAGGCACTGTTGCAGGACATCGTGTTCG
TGAGCGCAAAGTGTGTGAAAGAACTCAGAGAAATACTCCTCAGACGGGGA
CGTGAGAGATGGCGGATAAACGCAAATTGCAGACTGAAATCGACCGAATT
TTGAAGAAGGTGGACGAAGGGGTTGAGCTCTTCGATGAGATTTGGAAGAA
GGTATATTCAGCCAGGGATCCCAACCACAAGGAAAAGTACGAGCAAGACC
TGAAGAAGGAGATAAAGAAACTCCAACGCCACCGGGACCAGATTAAGACA
TGGCTGGGCCAGAACGATATCAAAGACAAGAAGAACTTGACGGAGGCGCG
GAAACTGATTGAGAGCAAGATGGAGCAGTTCAAGGTGTGCGAGAAGGAGG
CCAAGACCAAGAATTTCTCCAAGGAGGGCCTGGCCCGGGAGCAGAAAGTG
GACCCGAAGGAGGCGGCGAAGAACAGGACGCGGGAGTGGCTGGGCGCCGC
CGTGAACAAGCTAAACAACCAAATAGAGAGTTTTGACGCAGATTTGGAGC
GGCTCATGGCGGGGAAGGGCAAGAATAAAAATAAGGAGGAGATCGCGACC
TTGGAAGAGAGCATGGGTTGCCACAAGCAGCACGTGGCCAAGCTGGAACA
GATCATTCGCTTGATGGACAACGACCTGCGAGAGCCAGAGATGATCGAAA
AATGTAAAGAGGACATTGAATTTTTCGTGGAGGCGCACGAGGATGGGCAG
TACGAGAGTCAGTACGACGACGACATGGAGATGTACGACATCCTGGAGCT
CGACGAAGCCCCCATCCAGATCACCGACCTGCTCAGTCAGGGAGGCGGCC
CGAAGAAGAGTCCAAGGGACGGAGAGGAAGGGGAGGAGGACGGGTCGCTG
GGTGGCATGAGCGGCGGCGGGGAGGAGGACGACGTGGACCGGTCCACCTC
GAGCAAGACCTCGGGCTCTTCCAACGGGGCCTCCAAGGAGAAGCGAGGGA
CAAGCGCGCAAGCTGGGGCCGTGGGAGCTGTCGGGGGTGGCGCGGGGGGT
ACTCCCGAACTCAAAGGGATCGGGAGACCGGGAAAAGTGCAGTTCAACTC
CACCCCTACCGTGGTACGTGCTGTCGGGGGGGCAGCCCCCCGACCGGGCT
TAGGAGGTAACAAAGCAACCTCCGTAGGGTCCACGGGAACGACAGGACCA
CGCCTGACGGCATCGGCGGTGGTCGCAGGCACGGGCCCTTCCCCGGGCAA
GCCAACCGCGGCACAGGCGTTGAGAGGCAACCTGGCTGCGGCAGTGGTAG
GGGGGGGGACGGGCGTGCCAGACGGTGCGACGGCGGGGACAACGCCAGCC
ACGGCGGCGGCGATCCTGGCAAGGGACAAGACCGCGCAGTCCGCAATGCA
ACCGCCCCAGCAACCTCAGCAAACACCACAACAACCTCTGCCATCCCAGC
GCCTCCTCCCCCTCCGGCAGCAGCAAGCCTTGGCTGCTCAACAACAACAA
CTCGCCCAACAGCAGGCGGCACAGCAACAGGCCCTGATGGAGAGACAGAA
GAATTTGCAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGC
AACAAATGACTGTCCGTCCATCTGCCTTCGTTCCACCTGCCTCGGCGGCG
TCCAAGAGCTCTCCCCTCCCCCAAGGGAGCTCAAGTCCCATGACTGGAAG
TCAGCAATCCACCCCACCCCTGCGCTCTGCTCCTGCTCCGTCGACCACTC
AGCAGCAGCAACAACAAGGGACAGCACCGCACCGTGGTTCTCTGGGAGCC
GAACAACCGATACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAGCAACAGCAACACTTTCAGCAGCAGCAACCACAAAACAAACAACAGT
ATCAGCAGCAGCTCCACCGAGAACAACCGCCGCAGCAACAAGAACAGCAG
CAGCAAGAACAAAATAAACAACAATCACAGCAGCGGCAACAACTGGCACA
AGGACCACTGACGCAACCAGCAGAACACGCGTTTGGGGGGGGTCCTGGGA
GTGCAGTGGCGACAGGCGGGGGGGGGGGGGAGCCGGCGATGGATGCGACA
GCAGCTGCAAGCTTTTCGTCGAATGCTTCGCGTACAGCCCCTGAGACACT
GCAGATGCAGCTGACCTACCTGAGTCGTGCCATGCAATACATCCCTACCC
AGCACGACGCGGAGCGCCCCAAACAGTATTTTCCCCGCAACCCCTACCCG
GTTCACTCGTCTTTCCCCCTTGTCCCGGCGCCAATTTTCGACTCTCCATC
CATTTTCAAGAAGCTGGGCCCGGACACACTCTTCTTCATATTTTATTACC
AGCAGGGAACCTACCAACAATACCTGGCTGCGAAAGAACTGAAAGAGCAG
TCCTGGCGATTTCACAAAAAGTACATGACGTGGTTCCAGCGTCATGAAGA
GCCCCAGGTCACGACAGAGGACTATGAGCAAGGAACGTACGTCTACTTCG
ATTGCGAGTCGGGATGGTGCACGCGGATCAAACAAGCCTTTCGCTTCGAT
TACTCGGCCTTGGAGAATGACGAACCAAGGGGAGGCGAGAATTAGGGTTT
CCGCCATGATGCGCAACAACCATGGAAGAAGGACAGGCTGTTCGTTTGTC
TGAATTCAAAATGCGTCAAAATTGCAGCCGAAAAACGGGAATTAAAAGGA
AAAAGCGTAATGATTCGACAGCCCCATTGG

Coding sequence (CDS) from alignment at CM002456.1:1177615..1180694-

>rna1100 ID=rna1100|Name=rna1100|organism=Nannochloropsis gaditana|type=CDS|length=2487bp|location=Sequence derived from alignment at CM002456.1:1177615..1180694- (Nannochloropsis gaditana)
ATGGCGGATAAACGCAAATTGCAGACTGAAATCGACCGAATTTTGAAGAA
GGTGGACGAAGGGGTTGAGCTCTTCGATGAGATTTGGAAGAAGGTATATT
CAGCCAGGGATCCCAACCACAAGGAAAAGTACGAGCAAGACCTGAAGAAG
GAGATAAAGAAACTCCAACGCCACCGGGACCAGATTAAGACATGGCTGGG
CCAGAACGATATCAAAGACAAGAAGAACTTGACGGAGGCGCGGAAACTGA
TTGAGAGCAAGATGGAGCAGTTCAAGGTGTGCGAGAAGGAGGCCAAGACC
AAGAATTTCTCCAAGGAGGGCCTGGCCCGGGAGCAGAAAGTGGACCCGAA
GGAGGCGGCGAAGAACAGGACGCGGGAGTGGCTGGGCGCCGCCGTGAACA
AGCTAAACAACCAAATAGAGAGTTTTGACGCAGATTTGGAGCGGCTCATG
GCGGGGAAGGGCAAGAATAAAAATAAGGAGGAGATCGCGACCTTGGAAGA
GAGCATGGGTTGCCACAAGCAGCACGTGGCCAAGCTGGAACAGATCATTC
GCTTGATGGACAACGACCTGCGAGAGCCAGAGATGATCGAAAAATGTAAA
GAGGACATTGAATTTTTCGTGGAGGCGCACGAGGATGGGCAGTACGAGAG
TCAGTACGACGACGACATGGAGATGTACGACATCCTGGAGCTCGACGAAG
CCCCCATCCAGATCACCGACCTGCTCAGTCAGGGAGGCGGCCCGAAGAAG
AGTCCAAGGGACGGAGAGGAAGGGGAGGAGGACGGGTCGCTGGGTGGCAT
GAGCGGCGGCGGGGAGGAGGACGACGTGGACCGGTCCACCTCGAGCAAGA
CCTCGGGCTCTTCCAACGGGGCCTCCAAGGAGAAGCGAGGGACAAGCGCG
CAAGCTGGGGCCGTGGGAGCTGTCGGGGGTGGCGCGGGGGGTACTCCCGA
ACTCAAAGGGATCGGGAGACCGGGAAAAGTGCAGTTCAACTCCACCCCTA
CCGTGGTACGTGCTGTCGGGGGGGCAGCCCCCCGACCGGGCTTAGGAGGT
AACAAAGCAACCTCCGTAGGGTCCACGGGAACGACAGGACCACGCCTGAC
GGCATCGGCGGTGGTCGCAGGCACGGGCCCTTCCCCGGGCAAGCCAACCG
CGGCACAGGCGTTGAGAGGCAACCTGGCTGCGGCAGTGGTAGGGGGGGGG
ACGGGCGTGCCAGACGGTGCGACGGCGGGGACAACGCCAGCCACGGCGGC
GGCGATCCTGGCAAGGGACAAGACCGCGCAGTCCGCAATGCAACCGCCCC
AGCAACCTCAGCAAACACCACAACAACCTCTGCCATCCCAGCGCCTCCTC
CCCCTCCGGCAGCAGCAAGCCTTGGCTGCTCAACAACAACAACTCGCCCA
ACAGCAGGCGGCACAGCAACAGGCCCTGATGGAGAGACAGAAGAATTTGC
AACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAAATG
ACTGTCCGTCCATCTGCCTTCGTTCCACCTGCCTCGGCGGCGTCCAAGAG
CTCTCCCCTCCCCCAAGGGAGCTCAAGTCCCATGACTGGAAGTCAGCAAT
CCACCCCACCCCTGCGCTCTGCTCCTGCTCCGTCGACCACTCAGCAGCAG
CAACAACAAGGGACAGCACCGCACCGTGGTTCTCTGGGAGCCGAACAACC
GATACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAAC
AGCAACACTTTCAGCAGCAGCAACCACAAAACAAACAACAGTATCAGCAG
CAGCTCCACCGAGAACAACCGCCGCAGCAACAAGAACAGCAGCAGCAAGA
ACAAAATAAACAACAATCACAGCAGCGGCAACAACTGGCACAAGGACCAC
TGACGCAACCAGCAGAACACGCGTTTGGGGGGGGTCCTGGGAGTGCAGTG
GCGACAGGCGGGGGGGGGGGGGAGCCGGCGATGGATGCGACAGCAGCTGC
AAGCTTTTCGTCGAATGCTTCGCGTACAGCCCCTGAGACACTGCAGATGC
AGCTGACCTACCTGAGTCGTGCCATGCAATACATCCCTACCCAGCACGAC
GCGGAGCGCCCCAAACAGTATTTTCCCCGCAACCCCTACCCGGTTCACTC
GTCTTTCCCCCTTGTCCCGGCGCCAATTTTCGACTCTCCATCCATTTTCA
AGAAGCTGGGCCCGGACACACTCTTCTTCATATTTTATTACCAGCAGGGA
ACCTACCAACAATACCTGGCTGCGAAAGAACTGAAAGAGCAGTCCTGGCG
ATTTCACAAAAAGTACATGACGTGGTTCCAGCGTCATGAAGAGCCCCAGG
TCACGACAGAGGACTATGAGCAAGGAACGTACGTCTACTTCGATTGCGAG
TCGGGATGGTGCACGCGGATCAAACAAGCCTTTCGCTTCGATTACTCGGC
CTTGGAGAATGACGAACCAAGGGGAGGCGAGAATTAG

Synonyms

Publications