EWM29537.1, cds1099 (CDS) Nannochloropsis gaditana

Overview
NameEWM29537.1
Unique Namecds1099
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1177750..1180236 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29537.1
Productccr4-not transcription complex subunit 3
Orig transcript idgnl|cribi|Naga_100006g67.8626.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1177750..1180236 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR007207Not_N
IPR012270CCR4-NOT_su3/5
IPR007282NOT
Homology
BLAST of EWM29537.1 vs. NCBI_GenBank
Match: gi|585112108|gb|EWM29537.1| (ccr4-not transcription complex subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 1686.39 bits (4366), Expect = 0.000e+0
Identity = 828/828 (100.00%), Postives = 828/828 (100.00%), Query Frame = 0
Query:    1 MADKRKLQTEIDRILKKVDEGVELFDEIWKKVYSARDPNHKEKYEQDLKKEIKKLQRHRDQIKTWLGQNDIKDKKNLTEARKLIESKMEQFKVCEKEAKTKNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLMAGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCKEDIEFFVEAHEDGQYESQYDDDMEMYDILELDEAPIQITDLLSQGGGPKKSPRDGEEGEEDGSLGGMSGGGEEDDVDRSTSSKTSGSSNGASKEKRGTSAQAGAVGAVGGGAGGTPELKGIGRPGKVQFNSTPTVVRAVGGAAPRPGLGGNKATSVGSTGTTGPRLTASAVVAGTGPSPGKPTAAQALRGNLAAAVVGGGTGVPDGATAGTTPATAAAILARDKTAQSAMQPPQQPQQTPQQPLPSQRLLPLRQQQALAAQQQQLAQQQAAQQQALMERQKNLQQQQQQQQQQQQQQQQMTVRPSAFVPPASAASKSSPLPQGSSSPMTGSQQSTPPLRSAPAPSTTQQQQQQGTAPHRGSLGAEQPIQQQQQQQQQQQQQQQQQHFQQQQPQNKQQYQQQLHREQPPQQQEQQQQEQNKQQSQQRQQLAQGPLTQPAEHAFGGGPGSAVATGGGGGEPAMDATAAASFSSNASRTAPETLQMQLTYLSRAMQYIPTQHDAERPKQYFPRNPYPVHSSFPLVPAPIFDSPSIFKKLGPDTLFFIFYYQQGTYQQYLAAKELKEQSWRFHKKYMTWFQRHEEPQVTTEDYEQGTYVYFDCESGWCTRIKQAFRFDYSALENDEPRGGEN 828
            MADKRKLQTEIDRILKKVDEGVELFDEIWKKVYSARDPNHKEKYEQDLKKEIKKLQRHRDQIKTWLGQNDIKDKKNLTEARKLIESKMEQFKVCEKEAKTKNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLMAGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCKEDIEFFVEAHEDGQYESQYDDDMEMYDILELDEAPIQITDLLSQGGGPKKSPRDGEEGEEDGSLGGMSGGGEEDDVDRSTSSKTSGSSNGASKEKRGTSAQAGAVGAVGGGAGGTPELKGIGRPGKVQFNSTPTVVRAVGGAAPRPGLGGNKATSVGSTGTTGPRLTASAVVAGTGPSPGKPTAAQALRGNLAAAVVGGGTGVPDGATAGTTPATAAAILARDKTAQSAMQPPQQPQQTPQQPLPSQRLLPLRQQQALAAQQQQLAQQQAAQQQALMERQKNLQQQQQQQQQQQQQQQQMTVRPSAFVPPASAASKSSPLPQGSSSPMTGSQQSTPPLRSAPAPSTTQQQQQQGTAPHRGSLGAEQPIQQQQQQQQQQQQQQQQQHFQQQQPQNKQQYQQQLHREQPPQQQEQQQQEQNKQQSQQRQQLAQGPLTQPAEHAFGGGPGSAVATGGGGGEPAMDATAAASFSSNASRTAPETLQMQLTYLSRAMQYIPTQHDAERPKQYFPRNPYPVHSSFPLVPAPIFDSPSIFKKLGPDTLFFIFYYQQGTYQQYLAAKELKEQSWRFHKKYMTWFQRHEEPQVTTEDYEQGTYVYFDCESGWCTRIKQAFRFDYSALENDEPRGGEN
Sbjct:    1 MADKRKLQTEIDRILKKVDEGVELFDEIWKKVYSARDPNHKEKYEQDLKKEIKKLQRHRDQIKTWLGQNDIKDKKNLTEARKLIESKMEQFKVCEKEAKTKNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLMAGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCKEDIEFFVEAHEDGQYESQYDDDMEMYDILELDEAPIQITDLLSQGGGPKKSPRDGEEGEEDGSLGGMSGGGEEDDVDRSTSSKTSGSSNGASKEKRGTSAQAGAVGAVGGGAGGTPELKGIGRPGKVQFNSTPTVVRAVGGAAPRPGLGGNKATSVGSTGTTGPRLTASAVVAGTGPSPGKPTAAQALRGNLAAAVVGGGTGVPDGATAGTTPATAAAILARDKTAQSAMQPPQQPQQTPQQPLPSQRLLPLRQQQALAAQQQQLAQQQAAQQQALMERQKNLQQQQQQQQQQQQQQQQMTVRPSAFVPPASAASKSSPLPQGSSSPMTGSQQSTPPLRSAPAPSTTQQQQQQGTAPHRGSLGAEQPIQQQQQQQQQQQQQQQQQHFQQQQPQNKQQYQQQLHREQPPQQQEQQQQEQNKQQSQQRQQLAQGPLTQPAEHAFGGGPGSAVATGGGGGEPAMDATAAASFSSNASRTAPETLQMQLTYLSRAMQYIPTQHDAERPKQYFPRNPYPVHSSFPLVPAPIFDSPSIFKKLGPDTLFFIFYYQQGTYQQYLAAKELKEQSWRFHKKYMTWFQRHEEPQVTTEDYEQGTYVYFDCESGWCTRIKQAFRFDYSALENDEPRGGEN 828          
BLAST of EWM29537.1 vs. NCBI_GenBank
Match: gi|901807026|gb|KMZ64144.1| (CCR4-NOT transcription complex subunit 3 [Zostera marina])

HSP 1 Score: 371.318 bits (952), Expect = 5.335e-112
Identity = 297/886 (33.52%), Postives = 417/886 (47.07%), Query Frame = 0
Query:    1 MADKRKLQTEIDRILKKVDEGVELFDEIWKKVYSARDPNHKEKYEQDLKKEIKKLQRHRDQIKTWLGQNDIKDKK-------NLTEARKLIESKMEQFKVCEKEAKTKNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLMAGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCKEDIEFFVEAHEDGQYESQYDDDMEMY-----DILE--LDEAPIQITDLLSQGGGPKKSPRDGEEGEEDGS----LGGMSGGGEEDDVDRSTSSKTSGSSNGASKEKRGTSAQAGAVGAVGGGAGGTPELKGIGRP-----------GKVQFNSTPTVVRAVGGAAPRPGLGGNKATSVGSTGTTGPRLTASAVVAGTGPSPGKPTAAQALRGNLAAAVVGGG-TGVPDGATAGTTPATAAAILARDKTAQSAMQP----PQQPQQTPQQPLPSQRLLPLRQQQALAAQQQQLAQQQAAQQQALME--RQKNLQQQQQQQQQQQQQQQQMTVRPSAFVPPASAASKSSPLPQGSSSPMTGSQQSTPPLRSAPAPSTTQQQQQQGTAPHRGSLGAEQPIQQQQQQQQQQQQQQQQQHFQQQQPQNKQQYQQQLH-------REQPPQQQEQQQQEQNKQQSQQRQQLAQGPLTQPAEHAFGGG----PGSAVATGGGGGEPAMD--ATAAASFSS---NASRTAPETLQMQLTYLSRAMQYIPTQHDAERPKQYFPRNPYPVHSSFPLVPAPIFDSPSIFKKLG-----PDTLFFIFYYQQGTYQQYLAAKELKEQSWRFHKKYMTWFQRHEEPQVTTEDYEQGTYVYFDC--------ESGWCTRIKQAFRFDYSALEND 821
            M   RKLQ EIDR+LKKV EGV++FD IW KVY   + N KEK+E DLKKEIKKLQR+RDQIKTW+  ++IKDKK        L +ARK IE +ME+FK+CEKE KTK FSKEGL ++ K DPKE AK+ TR+WL   V  L +QIE F+A++E +   KGK +    +  LE S+  HK H+ KLE I+RL+DND   PE +   K+ ++ +VE ++D   E    DD         D+LE  +  +P+ + D+L     P  + +D  E     S    +  +   G    +  S++S  SG   GAS    G       VG          +++ +  P             V+ + T          AP    G     +   +  +   L +  V++GTG        A  +  +      G   T   D A  G    T   + +      +  +P      Q Q    Q      ++P ++++ L  Q+ Q++QQQ      L+       + Q+Q   QQQ    QQ        V    A S S  +       +  + Q++P             Q   G       +G  +P  QQQQ      Q   Q  F +       + + Q+          +PP          + +       L    +T P +     G       + ++ G  G  +M    T   +FS    N+S       Q+Q+  L  A+  +P  +D+ER K Y PR P    SS+P   API D+P+ +++LG      DTLFF FYYQQ TYQQYLAAKELK QSWR+H+KY TWFQRHEEP+VTT+DYEQGTYVYFD         + GWC RIK  F F+YS LE++
Sbjct:    1 MGASRKLQGEIDRVLKKVMEGVDVFDSIWNKVYDTENLNQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKICEKETKTKAFSKEGLGQQPKPDPKEKAKSETRDWLNNVVGDLESQIEHFEAEIEAVSVKKGKPR-PPRLIHLETSIARHKAHIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDCFDEFSDVDDFYCTLPLEKDLLEDLVANSPVLVKDVLVPPSQPSNATQDQSEAATQDSNSDVVRILPKNGTPGSLISSSTSIDSGIIGGASLTAPGNLTSHNLVGESTTVITSPIDIRSLENPVATDSSFIKHSSSVRNDDTTNFHSRRSSPAPNEIAGRGIGLASNQSSISAMDLGSVGVISGTGSFGVISDTANRISVSDEKTETGKSLTNFADTANVGEGSITGGRVFSPSVMTNAQWRPQNLNTYQSQNESGQNRGRAEVVPDQREKFL--QRYQVSQQQHQSATNLLSTGHISGVNQKQFIAQQQNSSMQQTKCDSGQKVKDDDAESDSDQMS------VEFNNQNSP-------------QVTIGLGGQPSIIGNAKPALQQQQPNLTLSQHSPQGSFSRDSDLGHVKIEGQMQIISSDDLNAEPPTS------SVSGKAVTSDDDLKSSYMTVPRDTDLPSGQPLQSNQSSSSHGVIGRRSMSDHGTIGDTFSGSFGNSSTMDDGAYQLQM--LDAAIHKLPQANDSERVKNYIPRRPAMTPSSYPQTQAPIVDNPAFWERLGLDNMGADTLFFSFYYQQNTYQQYLAAKELKRQSWRYHRKYNTWFQRHEEPKVTTDDYEQGTYVYFDFHIADDNMQQHGWCQRIKTDFTFEYSFLEDE 856          
BLAST of EWM29537.1 vs. NCBI_GenBank
Match: gi|567901804|ref|XP_006443390.1| (hypothetical protein CICLE_v10018788mg [Citrus clementina] >gi|568850800|ref|XP_006479085.1| PREDICTED: general negative regulator of transcription subunit 3 isoform X2 [Citrus sinensis] >gi|557545652|gb|ESR56630.1| hypothetical protein CICLE_v10018788mg [Citrus clementina])

HSP 1 Score: 261.922 bits (668), Expect = 2.599e-71
Identity = 131/245 (53.47%), Postives = 175/245 (71.43%), Query Frame = 0
Query:    1 MADKRKLQTEIDRILKKVDEGVELFDEIWKKVYSARDPNHKEKYEQDLKKEIKKLQRHRDQIKTWLGQNDIKDKKNLTEARKLIESKMEQFKVCEKEAKTKNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLMAGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCKEDIEFFVEAHEDGQYESQYDDDMEMYDILELDEAPIQITDLLSQG 245
            M   RKLQ EIDR+LKKV EGV++FD IW KVY   + N KEK+E DLKKEIKKLQR+RDQIKTW+  ++IKDKK L +ARKLIE +ME+FK+CEKE KTK FSKEGL ++ K DPKE AK+ TR+WL   V++L +QI+SF+A+LE L   KGK +    +  LE S+  HK H+ KLE I+RL+DND   PE +   K+ +E +VE ++D  +E ++ D  E+Y +L LD+    + DL++ G
Sbjct:    1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR-PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFE-EFSDVDELYHLLPLDKVE-SLEDLVTIG 241          
BLAST of EWM29537.1 vs. NCBI_GenBank
Match: gi|674233297|gb|KFK26062.1| (hypothetical protein AALP_AA8G198100 [Arabis alpina])

HSP 1 Score: 257.299 bits (656), Expect = 6.996e-70
Identity = 133/259 (51.35%), Postives = 177/259 (68.34%), Query Frame = 0
Query:    1 MADKRKLQTEIDRILKKVDEGVELFDEIWKKVYSARDPNHKEKYEQDLKKEIKKLQRHRDQIKTWLGQNDIKDKK-------NLTEARKLIESKMEQFKVCEKEAKTKNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLMAGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCKEDIEFFVEAHEDGQYESQYDDDMEMYDILELDEAPIQITDLLSQGGGPKKSP 252
            M   RKLQ EIDR+LKKV EGV++FD IW KVY   + N KEK+E DLKKEIKKLQR+RDQIKTW+  ++IKDKK       +L +ARKLIE +ME+FK+CEKE KTK FSKEGL ++ K DPKE AK+ TR+WL   V++L +QI+SF+A+LE L   KGK +    +  LE S+  HK H+ KLE I+RL+DND   PE +   K+ ++ +VE ++D  Y  ++ D  E+Y  L LDE    + DL++ G   K +P
Sbjct:    1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTR-PPRLTHLETSITRHKDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQD--YFDEFSDVDELYSTLPLDEVE-GLEDLVTAGPLVKGTP 255          
BLAST of EWM29537.1 vs. NCBI_GenBank
Match: gi|674894399|emb|CDY38498.1| (BnaA10g16600D [Brassica napus])

HSP 1 Score: 256.529 bits (654), Expect = 1.000e-69
Identity = 133/259 (51.35%), Postives = 177/259 (68.34%), Query Frame = 0
Query:    1 MADKRKLQTEIDRILKKVDEGVELFDEIWKKVYSARDPNHKEKYEQDLKKEIKKLQRHRDQIKTWLGQNDIKDKK-------NLTEARKLIESKMEQFKVCEKEAKTKNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLMAGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCKEDIEFFVEAHEDGQYESQYDDDMEMYDILELDEAPIQITDLLSQGGGPKKSP 252
            M   RKLQ EIDR+LKKV EGV++FD IW KVY + + N KEK+E DLKKEIKKLQR+RDQIKTW+  ++IKDKK       +L +ARKLIE +ME+FK+CEKE KTK FSKEGL ++ K DPKE AK+ TR+WL   V++L +QI+SF+A+LE L   KGK +    +  LE S+  HK H+ KLE I+RL+DND   PE +   K+ ++ +VE ++D   E  + D  E+Y  L LDE    + DL++ G   K +P
Sbjct:    1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDSDNVNQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTR-PPRLTHLETSISRHKDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDE--FSDVDELYSTLPLDEVE-GLEDLVTAGPLVKGTP 255          
BLAST of EWM29537.1 vs. NCBI_GenBank
Match: gi|1150690034|ref|XP_020256037.1| (general negative regulator of transcription subunit 3-like isoform X2 [Asparagus officinalis] >gi|1141993075|gb|ONK74294.1| uncharacterized protein A4U43_C03F4770 [Asparagus officinalis])

HSP 1 Score: 256.144 bits (653), Expect = 1.810e-69
Identity = 132/250 (52.80%), Postives = 174/250 (69.60%), Query Frame = 0
Query:    1 MADKRKLQTEIDRILKKVDEGVELFDEIWKKVYSARDPNHKEKYEQDLKKEIKKLQRHRDQIKTWLGQNDIKDKKNLTEARKLIESKMEQFKVCEKEAKTKNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLMAGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCKEDIEFFVEAHEDGQYESQYDDDMEMYDILELDEAPIQITDLLSQGGGPKK 250
            M   RKLQ EIDR+LKKV EGV++FD IW KVY   + N KEK+E DLKKEIKKLQR+RDQIKTW+  ++IKDKK L +ARKLIE +ME+FK+CEKE KTK FSKEGL ++ K DPKE AK+ TR+WL   V  L +QI++F+A++E     KGK KN   +A LE S+G HK H+ KLE I+RL+DND   P+ +   KE +E +VE ++D  +E ++DD    Y  L L+   ++  DL++   G  K
Sbjct:    1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGDLESQIDNFEAEVEGFSGKKGKTKNP-RLAHLETSIGRHKAHIMKLELILRLLDNDELSPDQVNDLKEFLEDYVECNQD-DFE-RFDDVDGFYSSLPLEVEALE--DLVALPSGLAK 245          
BLAST of EWM29537.1 vs. NCBI_GenBank
Match: gi|731400064|ref|XP_010653838.1| (PREDICTED: CCR4-NOT transcription complex subunit 3 isoform X2 [Vitis vinifera])

HSP 1 Score: 256.144 bits (653), Expect = 3.181e-69
Identity = 130/247 (52.63%), Postives = 172/247 (69.64%), Query Frame = 0
Query:    1 MADKRKLQTEIDRILKKVDEGVELFDEIWKKVYSARDPNHKEKYEQDLKKEIKKLQRHRDQIKTWLGQNDIKDKKNLTEARKLIESKMEQFKVCEKEAKTKNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLMAGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCKEDIEFFVEAH-EDGQYESQYDDDMEMYDILELDEAPIQITDLLSQGG 246
            M   RKLQ EIDR+LKKV EGV++FD IW KVY   + N KEK+E DLKKEIKKLQR+RDQIKTW+  ++IKDKK L +ARKLIE +ME+FK+CEKE KTK FSKEGL ++ K DPKE AK+ TR+WL   V +L +QI+SF+A++E L   KGK +    +  LE S+  HK H+ KLE I+RL+DND   PE +   K+ ++ +VE + ED +  S  DD   +Y+ L LD+    + DL++ G 
Sbjct:    1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNTVVGELESQIDSFEAEIEGLSVKKGKTR-PPRLTHLETSIARHKAHIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDD---LYNSLPLDKVE-SLEDLVTIGA 242          
BLAST of EWM29537.1 vs. NCBI_GenBank
Match: gi|1190996878|ref|XP_020879006.1| (general negative regulator of transcription subunit 3 isoform X3 [Arabidopsis lyrata subsp. lyrata] >gi|297319715|gb|EFH50137.1| transcription regulator NOT2/NOT3/NOT5 family protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 254.988 bits (650), Expect = 4.683e-69
Identity = 133/259 (51.35%), Postives = 176/259 (67.95%), Query Frame = 0
Query:    1 MADKRKLQTEIDRILKKVDEGVELFDEIWKKVYSARDPNHKEKYEQDLKKEIKKLQRHRDQIKTWLGQNDIKDKK-------NLTEARKLIESKMEQFKVCEKEAKTKNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLMAGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCKEDIEFFVEAHEDGQYESQYDDDMEMYDILELDEAPIQITDLLSQGGGPKKSP 252
            M   RKLQ EIDR+LKKV EGV++FD IW KVY   + N KEK+E DLKKEIKKLQR+RDQIKTW+  ++IKDKK       +L +ARKLIE +ME+FK+CEKE KTK FSKEGL ++ K DPKE AK+ TR+WL   V++L +QI+SF+A+LE L   KGK +    +  LE S+  HK H+ KLE I+RL+DND   PE +   K+ ++ +VE ++D   E  + D  E+Y  L LDE    + DL++ G   K +P
Sbjct:    1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTR-PPRLTHLETSITRHKDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDE--FSDVDELYSTLPLDEVE-GLEDLVTAGPLVKGTP 255          
BLAST of EWM29537.1 vs. NCBI_GenBank
Match: gi|1150730394|ref|XP_020275994.1| (CCR4-NOT transcription complex subunit 3-like isoform X2 [Asparagus officinalis])

HSP 1 Score: 253.447 bits (646), Expect = 1.787e-68
Identity = 131/251 (52.19%), Postives = 174/251 (69.32%), Query Frame = 0
Query:    1 MADKRKLQTEIDRILKKVDEGVELFDEIWKKVYSARDPNHKEKYEQDLKKEIKKLQRHRDQIKTWLGQNDIKDKKNLTEARKLIESKMEQFKVCEKEAKTKNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLMAGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCKEDIEFFVEAHEDGQYESQYDDDMEMYDILELDEAPIQITDLLSQGGGPKKS 251
            M   RKLQ EIDR+LKKV EGV++FD IW KVY   + N KEK+E DLKKEIKKLQR+RDQIKTW+  ++IKDKK L +ARKLIE +ME+FK+CEKE KTK FSKEGL ++ K DPKE AK+ TR+WL  AV  L +QI++F+A++E     KGK KN   +  LE S+G HK H+ KLE I+RL+DND   P+ +   KE +E +VE ++D  +E ++ D    Y  L L+   ++  DL++   G  K+
Sbjct:    1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNAVGDLESQIDNFEAEVEGFSVKKGKMKNP-RLTHLETSIGRHKAHIMKLELILRLLDNDELSPDQVNDLKEFLEDYVECNQD-DFE-RFGDVDGFYSSLPLEVEALE--DLVTIPSGLTKA 246          
BLAST of EWM29537.1 vs. NCBI_GenBank
Match: gi|674233296|gb|KFK26061.1| (hypothetical protein AALP_AA8G198100 [Arabis alpina])

HSP 1 Score: 252.292 bits (643), Expect = 5.027e-68
Identity = 133/261 (50.96%), Postives = 177/261 (67.82%), Query Frame = 0
Query:    1 MADKRKLQTEIDRILKKVDEGVELFDEIWKK--VYSARDPNHKEKYEQDLKKEIKKLQRHRDQIKTWLGQNDIKDKK-------NLTEARKLIESKMEQFKVCEKEAKTKNFSKEGLAREQKVDPKEAAKNRTREWLGAAVNKLNNQIESFDADLERLMAGKGKNKNKEEIATLEESMGCHKQHVAKLEQIIRLMDNDLREPEMIEKCKEDIEFFVEAHEDGQYESQYDDDMEMYDILELDEAPIQITDLLSQGGGPKKSP 252
            M   RKLQ EIDR+LKKV EGV++FD IW K  VY   + N KEK+E DLKKEIKKLQR+RDQIKTW+  ++IKDKK       +L +ARKLIE +ME+FK+CEKE KTK FSKEGL ++ K DPKE AK+ TR+WL   V++L +QI+SF+A+LE L   KGK +    +  LE S+  HK H+ KLE I+RL+DND   PE +   K+ ++ +VE ++D  Y  ++ D  E+Y  L LDE    + DL++ G   K +P
Sbjct:    1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTR-PPRLTHLETSITRHKDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQD--YFDEFSDVDELYSTLPLDEVE-GLEDLVTAGPLVKGTP 257          
The following BLAST results are available for this feature:
BLAST of EWM29537.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112108|gb|EWM29537.1|0.000e+0100.00ccr4-not transcription complex subunit 3 [Nannochl... [more]
gi|901807026|gb|KMZ64144.1|5.335e-11233.52CCR4-NOT transcription complex subunit 3 [Zostera ... [more]
gi|567901804|ref|XP_006443390.1|2.599e-7153.47hypothetical protein CICLE_v10018788mg [Citrus cle... [more]
gi|674233297|gb|KFK26062.1|6.996e-7051.35hypothetical protein AALP_AA8G198100 [Arabis alpin... [more]
gi|674894399|emb|CDY38498.1|1.000e-6951.35BnaA10g16600D [Brassica napus][more]
gi|1150690034|ref|XP_020256037.1|1.810e-6952.80general negative regulator of transcription subuni... [more]
gi|731400064|ref|XP_010653838.1|3.181e-6952.63PREDICTED: CCR4-NOT transcription complex subunit ... [more]
gi|1190996878|ref|XP_020879006.1|4.683e-6951.35general negative regulator of transcription subuni... [more]
gi|1150730394|ref|XP_020275994.1|1.787e-6852.19CCR4-NOT transcription complex subunit 3-like isof... [more]
gi|674233296|gb|KFK26061.1|5.027e-6850.96hypothetical protein AALP_AA8G198100 [Arabis alpin... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1100rna1100Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications