rna1087, rna1087 (mRNA) Nannochloropsis gaditana

Overview
Namerna1087
Unique Namerna1087
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1344
Alignment locationCM002456.1:1155422..1157188 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g79.8678.mrna
Orig protein idgnl|cribi|Naga_100006g79.8678
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1155422..1157188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g79gene1048Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1087rna1087-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29589.1cds1086Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1087 ID=rna1087|Name=rna1087|organism=Nannochloropsis gaditana|type=mRNA|length=1344bp
ATGCTCTCTCATGGCGGAACGGTAACTCTGCGCAGTAAGCAGTTCTTGCC
GTTAGCCCATGCTGCATTTTCAACATTGCGCACTCCTGCTTGCTCCTCCG
TCGCGACCAATGTAGCTCCACGTTTGCTTCGACGACGAGTCACCATGCCT
GTAACCGCACTGGGTGAGAATTTACGCCTTGTGCCGCGACGTTCTTTGGC
ATCCATGCCCCACTCAAGCTACCAATTTTCCACAATGTACGAGGACGTGT
GGCCCCTGGGTAGCACGAACACCATCCTCAACGTCTGCCCACAGGGCGAG
CGCTTCGTAGTGGAACGCTTTGGAAAACTTCTGGATATCAAGGAGTCGGG
GTGGTTTCTAGCCATCCCCTACGTGGACCGCATCGCCTACCGCATCGATA
TGCGCGAGCGAGCCATGGCCATCGCCCCGCAACCGGCCATCACCAAGGAC
AACGTCTCGGTGGACGTGAGTGGCATCCTCTACGTGCAATTTGTGGACCC
AGCCCAGGCCGCCTACGGCTCTTACAATCCCTTGTACGCCGTGCGTCAAT
GCGCGCAGTCGGCGATGCGGGCGGCCCTCGGTGAGCTGGAGCTGGACGAG
ATTTTGCACGCCCGGAGTCGGTTGAACGAAATGATCCGAAAGAGCATTCA
AGACGCGTGTACGGCCTGGGGTATGGAGGTGAAGCGGTACGAGATCACGG
AGATCCGCCCGGACAAGACGATCACGCATGCCATGGACAAGCAGGCGGCG
GCGGAGCGGCACCGGCGGGAGTTGGTCATCAAGGCGGAGGGGGAGAAGCG
GGCACAAGAGTTGCAGTCGGAGGGGGTGAAGATCAAACTCAGGAACGAAT
CCGAGGGCGACCTGATCAAGACCACCAACGAGGCTGAGGCCCGCAAGCAG
CAGTACATCCTGGAAGGGGAGGGAGAAGCCAAGGCGATCCGTGTGAAGGC
GGAGGCCTTCGCCGAGTCCATCCGGGTGGTGGCGGAGAGCCTGGGCGAGG
CGCAAGGTCAGGACGCCGCCAAGCTGCAGGTGGCCAAGGAGTATATCAGC
ATGTACGGTCTGATGGGTTCCCAGTCCCACACCATGCTTTTCTCGGACCG
GCCTGGGGACGTGAACGCCCTCTTCGCCCAGGCGGCATTGGCTCTGCAGG
CAGCAGGGCAGAGCAGCGTGACCGGAAAGGCGCCCAGTCCCGTGAGCGTG
GTGCCGGCGCCTACCTACACGGGAGAGAGGGTTCAAGGAGGGGGCGGGGG
AGGGCTTGGGGGAGGAAGGGGGGCATTGGAAGGAGTGAGGCGAGGCAATG
AAGGGGGGGGGGGGCTGGAGAGAGCTAGCTTGTGGAGATTCTGA
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protein sequence of rna1087

>rna1087-protein ID=rna1087-protein|Name=rna1087|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MIRCRKYLSIPSPSAPSLRHISQRSMTTRTRAKANVGNDVTPAKEGVATR
QRRQASDSSGPPSQTSLPPIKKAVKRTSNVDQSDDDDDKPVEIQSRAIRD
GERGNHSRPSGLNTRVKKRPRKVKERENKYWAEKGGHEGAGQGRPVHEDE
GDVQGLSAPNHAATEANEDGQKNVEEANRLVDPSSGDEPLPATFWEAVQR
AKEAEQQQRINEALRRVETKRCV
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mRNA from alignment at CM002456.1:1155422..1157188+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1087 ID=rna1087|Name=rna1087|organism=Nannochloropsis gaditana|type=mRNA|length=1767bp|location=Sequence derived from alignment at CM002456.1:1155422..1157188+ (Nannochloropsis gaditana)
ACAGAACCGCGACGCGTCGTCACTGTTGTGCTTCTTGTCAACGTGGAAGA
ACTCAAGAAGAACTGAAGCTAGCGATGATTCGATGTCGCAAGTATCTTTC
CATTCCGTCACCCTCTGCGCCCTCCTTACGCCATATTTCTCAGCGGTCGA
TGACCACAAGAACGCGAGCTAAAGCCAATGTTGGCAATGATGTTACGCct
gccaaggagggcgtAGCAACGAGGCAGCGGAGACAAGCATCCGactcctc
cggccctccctcccaaacgtccctcccacccattAAGAAAGCAGTGAAAA
GGACTTCTAACGTGGACCAATcagacgacgacgacgacaaaCCCGTAGAA
ATTCAGGTATATGATGTCAATCATGGTATATTTGTGCTTTGTAAAAAATT
CCTTTTCCAACTGCTACGCTTACTTGATTCACCTattgtctccttcctgc
gtTGTAGTCTCGTGCGATACGAGATGGTGAGCGTGGCAATCACTCAAGGC
CAAGCGGCTTGAATACACGGGTTAAAAAGCGACCACGGAAAGTTAAGGAG
CGCGAAAACAAATAttgggcggagaaggggggccATGAGGGTgcagggca
aggaagacCGGTGCATGAGGATGAAGGGGATGTACAgggcctctccgccc
ctAACCATGCCGCTACAGAAGCAAACGAGGATGGGCAGAAAAATGTGGAA
GAGGCAAACAGACTTGTGGACCCTTCCTCGGGAGATGAACCCTTGCCGGC
GACTTTCTGGGAAGCAGTGCAACGGGCCAAAGAAGCCGAGCAACAGCAAC
GCATCAATGAGGCTCTGCGGCGCGTGGAGACCAAGAGGTGCGTGTAGGGG
GGGAGACAGGCGTAATAATGTGCTATGGGGTAaaagaggcggagagaggT
GTGATGGAGGAGTTTTAGCGTTCTACATGGATGTGGAAGGTGGCTGTAAC
CGGAGGTACGACGCCCACTGCGATAGCTTATAGCCGGATCCAAGACGGAG
ATGGTCTCTTCATGCCTCATTCAAATACACGATGGTATGACAGGGGAAAA
ACGAGTGAAGGAGAGCAAACGAGGTTCAAGAAAATCGTGAAGATTCCTCG
AGTGAGGTAGGTGCAGATGATATCAGAATGAGAGGAAGATCGCGTGAACG
TCGACGAAAAGATGGGCCGCATGGACTCGAACGAGTCTAATCCAAGTGCC
TCTACATTCAGTGGAAACATTCAGGTGGTTCCGCTTAATGAGCTAACGGA
GGAGGTAGATGGGAGGACCGACGTCCCGTCCGAGGTAAGCTTCGTTTATT
CGTTTAAATCGCGATGACGATAcaaggatgaagaagaagggctgGTGCCT
ATCGTGTACCTAGAGCGTGCCATGAAAAAATGTCACGGCCTCCATGCCTT
TTCTGCCCTTCTCTCTGTAGGTTCTGGCGTTCGCGCAATCATTGGGAGCA
AGCACCGGCCTTGCAACTTCACGGAAAAGGGTGCCATTCGTGGCATTTGC
TAGAGCAAAACCCAGCACCGTAAGGTCGAAAAGCACTCACAAGGCCGCTC
CGAGGGCAAGGGCAGGTGAAAATCCCAtatgaaaaagaaaatagGGTATG
GCAGACAAGAGATTTAAGAAAAATACTCGAAAATATTTTGATTGTTTAAG
CGCGTTCCTGGCGCGCACGAGCGTGGGAATTTCTTTTTCGCCTCTTCAGA
CCATCTcgattttctttttttggggtTGTCATCCTATACTTGTACATCCA
AGGCTTACTTAAAATCG
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Coding sequence (CDS) from alignment at CM002456.1:1155422..1157188+

>rna1087 ID=rna1087|Name=rna1087|organism=Nannochloropsis gaditana|type=CDS|length=1344bp|location=Sequence derived from alignment at CM002456.1:1155422..1157188+ (Nannochloropsis gaditana)
ATGATTCGATGTCGCAAGTATCTTTCCATTCCGTCACCCTCTGCGCCCTC
CTTACGCCATATTTCTCAGCGGTCGATGACCACAAGAACGCGAGCTAAAG
CCAATGTTGGCAATGATGTTACGCctgccaaggagggcgtAGCAACGAGG
CAGCGGAGACAAGCATCCGactcctccggccctccctcccaaacgtccct
cccacccattAAGAAAGCAGTGAAAAGGACTTCTAACGTGGACCAATcag
acgacgacgacgacaaaCCCGTAGAAATTCAGTCTCGTGCGATACGAGAT
GGTGAGCGTGGCAATCACTCAAGGCCAAGCGGCTTGAATACACGGGTTAA
AAAGCGACCACGGAAAGTTAAGGAGCGCGAAAACAAATAttgggcggaga
aggggggccATGAGGGTgcagggcaaggaagacCGGTGCATGAGGATGAA
GGGGATGTACAgggcctctccgcccctAACCATGCCGCTACAGAAGCAAA
CGAGGATGGGCAGAAAAATGTGGAAGAGGCAAACAGACTTGTGGACCCTT
CCTCGGGAGATGAACCCTTGCCGGCGACTTTCTGGGAAGCAGTGCAACGG
GCCAAAGAAGCCGAGCAACAGCAACGCATCAATGAGGCTCTGCGGCGCGT
GGAGACCAAGAGGTGCGTGTAGATGATTCGATGTCGCAAGTATCTTTCCA
TTCCGTCACCCTCTGCGCCCTCCTTACGCCATATTTCTCAGCGGTCGATG
ACCACAAGAACGCGAGCTAAAGCCAATGTTGGCAATGATGTTACGCctgc
caaggagggcgtAGCAACGAGGCAGCGGAGACAAGCATCCGactcctccg
gccctccctcccaaacgtccctcccacccattAAGAAAGCAGTGAAAAGG
ACTTCTAACGTGGACCAATcagacgacgacgacgacaaaCCCGTAGAAAT
TCAGTCTCGTGCGATACGAGATGGTGAGCGTGGCAATCACTCAAGGCCAA
GCGGCTTGAATACACGGGTTAAAAAGCGACCACGGAAAGTTAAGGAGCGC
GAAAACAAATAttgggcggagaaggggggccATGAGGGTgcagggcaagg
aagacCGGTGCATGAGGATGAAGGGGATGTACAgggcctctccgcccctA
ACCATGCCGCTACAGAAGCAAACGAGGATGGGCAGAAAAATGTGGAAGAG
GCAAACAGACTTGTGGACCCTTCCTCGGGAGATGAACCCTTGCCGGCGAC
TTTCTGGGAAGCAGTGCAACGGGCCAAAGAAGCCGAGCAACAGCAACGCA
TCAATGAGGCTCTGCGGCGCGTGGAGACCAAGAGGTGCGTGTAG
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Synonyms
Publications