EWM29589.1, cds1086 (CDS) Nannochloropsis gaditana

Overview
NameEWM29589.1
Unique Namecds1086
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1155496..1155777 +
Alignment locationCM002456.1:1155879..1156268 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29589.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g79.8678.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1155496..1155777 +
CM002456.1supercontigCM002456.1:1155879..1156268 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM29589.1 vs. NCBI_GenBank
Match: gi|585112160|gb|EWM29589.1| (hypothetical protein Naga_100006g79 [Nannochloropsis gaditana])

HSP 1 Score: 454.521 bits (1168), Expect = 1.092e-161
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0 
Query:    1 MIRCRKYLSIPSPSAPSLRHISQRSMTTRTRAKANVGNDVTPAKEGVATRQRRQASDSSGPPSQTSLPPIKKAVKRTSNVDQSDDDDDKPVEIQSRAIRDGERGNHSRPSGLNTRVKKRPRKVKERENKYWAEKGGHEGAGQGRPVHEDEGDVQGLSAPNHAATEANEDGQKNVEEANRLVDPSSGDEPLPATFWEAVQRAKEAEQQQRINEALRRVETKRCV 223
            MIRCRKYLSIPSPSAPSLRHISQRSMTTRTRAKANVGNDVTPAKEGVATRQRRQASDSSGPPSQTSLPPIKKAVKRTSNVDQSDDDDDKPVEIQSRAIRDGERGNHSRPSGLNTRVKKRPRKVKERENKYWAEKGGHEGAGQGRPVHEDEGDVQGLSAPNHAATEANEDGQKNVEEANRLVDPSSGDEPLPATFWEAVQRAKEAEQQQRINEALRRVETKRCV
Sbjct:    1 MIRCRKYLSIPSPSAPSLRHISQRSMTTRTRAKANVGNDVTPAKEGVATRQRRQASDSSGPPSQTSLPPIKKAVKRTSNVDQSDDDDDKPVEIQSRAIRDGERGNHSRPSGLNTRVKKRPRKVKERENKYWAEKGGHEGAGQGRPVHEDEGDVQGLSAPNHAATEANEDGQKNVEEANRLVDPSSGDEPLPATFWEAVQRAKEAEQQQRINEALRRVETKRCV 223
[Close]
BLAST of EWM29589.1 vs. NCBI_GenBank
Match: gi|585112159|gb|EWM29588.1| (hypothetical protein Naga_100006g79 [Nannochloropsis gaditana])

HSP 1 Score: 398.282 bits (1022), Expect = 2.120e-138
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 
Query:   26 MTTRTRAKANVGNDVTPAKEGVATRQRRQASDSSGPPSQTSLPPIKKAVKRTSNVDQSDDDDDKPVEIQSRAIRDGERGNHSRPSGLNTRVKKRPRKVKERENKYWAEKGGHEGAGQGRPVHEDEGDVQGLSAPNHAATEANEDGQKNVEEANRLVDPSSGDEPLPATFWEAVQRAKEAEQQQRINEALRRVETKR 221
            MTTRTRAKANVGNDVTPAKEGVATRQRRQASDSSGPPSQTSLPPIKKAVKRTSNVDQSDDDDDKPVEIQSRAIRDGERGNHSRPSGLNTRVKKRPRKVKERENKYWAEKGGHEGAGQGRPVHEDEGDVQGLSAPNHAATEANEDGQKNVEEANRLVDPSSGDEPLPATFWEAVQRAKEAEQQQRINEALRRVETKR
Sbjct:    1 MTTRTRAKANVGNDVTPAKEGVATRQRRQASDSSGPPSQTSLPPIKKAVKRTSNVDQSDDDDDKPVEIQSRAIRDGERGNHSRPSGLNTRVKKRPRKVKERENKYWAEKGGHEGAGQGRPVHEDEGDVQGLSAPNHAATEANEDGQKNVEEANRLVDPSSGDEPLPATFWEAVQRAKEAEQQQRINEALRRVETKR 196
The following BLAST results are available for this feature:
BLAST of EWM29589.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112160|gb|EWM29589.1|1.092e-161100.00hypothetical protein Naga_100006g79 [Nannochlorops... [more]
gi|585112159|gb|EWM29588.1|2.120e-138100.00hypothetical protein Naga_100006g79 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1087rna1087Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications