rna1041, rna1041 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1041
Unique Name	rna1041
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1065
Alignment location	CM002456.1:1028109..1031294 +

Link to JBrowse

Properties


Property Name	Value
Product	T-complex 11
Orig transcript id	gnl\|cribi\|Naga_100050g17.6863.mrna
Orig protein id	gnl\|cribi\|Naga_100050g17.6863
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1028109..1031294 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g17	gene1003	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1041	rna1041-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29640.1	cds1040	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1028109..1031294+
coding sequence from alignment at CM002456.1:1028109..1031294+

mRNA sequence

>rna1041 ID=rna1041|Name=rna1041|organism=Nannochloropsis gaditana|type=mRNA|length=1065bp
TTTCCCAGGGCTTTTGGCGAGGCACCGGATCGAGCAAAGTGAAGGAAGTG
ATCTACCCTAAAAAGAATTATTACGGCTTTCTTTGGGCACATAGGAGCAC
TTAAAATGGCCACCGCTACCCCTCCCATCGGGTCTCCTGCCCGGTGGCGG
CTTGATGGTCAGACAGTTTTGTGCACGGGTGGCACCAAGGGCATCGGAAA
AGCTATAGTGGAAGAGTTTGCTTCGTTGGGAGCACGCGTCTTCACCTGTG
CACGCTCTGCTTCGGATTTAGCTGCTTGTTTGAAGGAATGGACAGCTAAG
GGGTACGAAGTGGAAGGAATTGCGGTGGATGTTAGTGACAGCGACGCCCG
CCGTGCTATGATGGAGCAAGTAGCCGGATCGTTTGTGGGGAGGTTGGACG
TTCTCGTCAACAACGTGGGCACCAACATCCGGAAACCTACGGCGCAGTAC
ACGGAAGATCAGTACGATAAAATCATGGATATCAACCTGAAAAGCACATA
TCATTTGTGCCAGCTCGCCCACCCGTTGCTTAAAAAAGCAGGGAAAGGAT
GCGTGATTAATGTAGGGAGTGTAGCAGGCGTGATAGGCATCAAGTCAGGT
TCTGTGTACGGCTTGACAAAGGCCGCAATGGTTCAGCTATCTAAAAACCT
AGCCTGTGAATGGGCTTCAGACGGTATTCGAGTCAACACTGTCGCACCAT
GGTACATCGAAACGCCCCTCACAGCTCAGGTCCTTGGTGATCCTGTCTAC
CGCAAAGAAGTAGAAGATCGAACACCCATGAAGCGAGTCGGGTCGTCAGA
GGAGATCAGCGGTATCTGCGCCTTTTTGGCGATGTCAGGATCTTCATACA
TAACCGGACAAACGGTTTGCGTAGACGGTGGCTTCACTGTTAACGGTTTC
TACTAAGCTATTAAGAAAGCGGAGGAGTGATTTTAATGCGTTTCTTCTCC
TTAAAATGCAAGCTTTATAGATTTCTTCTCCTTAAAATGCAAGCATTATA
GATTGGATACGAGAAGGAATTTTAGACGACGCTCTCATAAATTATGATGT
GTGACTTTTGCTTGC

protein sequence of rna1041

>rna1041-protein ID=rna1041-protein|Name=rna1041|organism=Nannochloropsis gaditana|type=polypeptide|length=942bp
MMKTTAAPESTQCVAAAIVNVTSETSSKPSSETSLPPQPSLSSEAGIVAT
SKHMLRATPEERAVSYSCMQSSERIGGQVGSPASSGGLNLGKRRIAQSET
STFQSPRHLKHQVSSSSYLPQPRTARKNKSAQLLDFLRDGIKTQQHSCQA
LGMAREHAILVLQRWFRNLREHWRLVKQVQEATSQSLLPLLEAAEASRAG
SWASEWEAMCRQGSLEFHACHMLQGLGFAREGQAADKSLTHPMTLLSALL
ISVHPEAIMTASPVRSKRRRREHERRGIALVQAASRVHETLLALYHCLHQ
AKMPRWVMLRAVVQVRKAFRLYVVQRVRYQGVSDAEAARLVRRVTHAAVG
VFKAMHRSQQKSQVDAAQAIECAEAIIEGEARLRHLEAALQQLVGQRDTA
RRMDMARQVAEEGKQRDGKIHGRSELKPLASDQDETLMSMDSEPEGELHA
SGDTQTDTIFSNEWLVHEICVLPKSRFLQVSMEDASQPLTCGNKPSQGDT
QAYWETVTQTLLMGDFSPLLVLVQELADRLISMTPSRADLRDEILGSLDV
ALLKQVLSKDLLDSQLLFSILRFTGRRILCLEAPARNASTERWLVRLKEL
EDRVLQQAGGPCVRLSLQDSTVSKQWVPSISPLFEFLLEKVDQIHVDIFN
SHIRRATPHCRAHGPSFERSQFEERLAQGLTSVDRVLSWLRGVVASAWCQ
EQSMPVSSLRHGDQRVALLEGVRQQSGEAMRTLLRRAYASLLADSSRQGR
PVSVFSEDDLPETLAIDAQRLGLARHALWCVASAGTVVAYLGQALGRQLR
AEERQVVVQELMVLLPEADVEVEDIGLHVGHIASTRLGMTGAGERKMMEE
RVRRLLQEGRCPVFQLLYQRAVDVVHAVLEREESTTEDESGRVAHLCQQQ
GLTGMESRILKICDVMLLVTRHNEACFLSLYQKLVSDALRSE

mRNA from alignment at CM002456.1:1028109..1031294+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1041 ID=rna1041|Name=rna1041|organism=Nannochloropsis gaditana|type=mRNA|length=3186bp|location=Sequence derived from alignment at CM002456.1:1028109..1031294+ (Nannochloropsis gaditana)
TGCTTGGGTTTGGGTTTTTGGTCGCTGTGCTTCTGTTCTATCTACATGTA
GTTTACATCCTGATCAACGTAATAAACCATCTGAACAGATCAAAGCCGCA
TCTACACACGAAGTAGGTGGATTTGTTTCGTGAGACACGTATCGTTATTC
GCCGCCACATTTTTCTGAAGTAGGTGGATACTTTGCCTCGTTTTACCAAA
GCTAAGCATGATGAAAACCACTGCTGCTCCTGAAAGCACACAATGTGTCG
CTGCAGCTATCGTCAACGTGACGTCAGAGACCAGCTCAAAACCTTCCAGT
GAGACGAGTCTTCCACCGCAgccgtccttgtcttccgAGGCGGGCATCGT
CGCCACATCTAAGCATATGCTACGCGCCACCCCCGAAGAACGGGCAGTGT
CCTACTCATGTATGCAGAGTAGCGAGCGTATTGGAGGTCAGGTCGGCTCC
CCTGCATCTTCTGGAGGCCTGAATCTTGGAAAAAGGCGGATCGCCCAGTC
GGAGACCTCTACGTTCCAGAGTCCACGCCACCTCAAGCACCAGgtctcgt
cctcgtcatACCTCCCGCAGCCGAGGACAGCTCGCAAGAATAAGTCTGCG
CAACTGCTCGATTTCCTTCGAGATGGCATCAAAACTCAGCAGCATTCCTG
CCAAGCGCTGGGAATGGCCCGGGAACATGCCATTCTGGTCCTTCAACGCT
GGTTCCGAAACCTACGAGAGCATTGGCGGCTGGTGAAACAGGTCCAAGAA
GCGACCAGCCAGTCGTTATTGCCCTTGTTGGAGGCTGCGGAGGCTTCAAG
AGCGGGCTCGTGGGCGTCGGAGTGGGAGGCGATGTGCCGGCAGGGTAGCC
TCGAGTTTCATGCGTGCCACATGCTGCAGGGGCTGGGCTTCGCCCGCGAA
GGGCAGGCAGCGGACAAGTCGCTTACACATCCCATGACCTTACTATCTGC
ATTACTGATATCTGTGCACCCTGAGGCTATCATGACTGCTTCGCCTGTCA
GGAGCAAGCGCCGACGCCGAGAGCACGAGCGACGAGGGATCGCTCTTGTC
CAGGCGGCGTCGCGGGTGCACGAGACTTTGCTGGCATTGTACCACTGCCT
GCATCAAGCGAAGATGCCGCGATGGGTAATGCTGCGAGCGGTGGTTCAGG
TCCGTAAGGCCTTCCGCCTCTACGTCGTCCAACGAGTGCGATACCAAGGA
GTGTCAGACGCGGAGGCGGCCCGCTTGGTTCGACGCGTCACACACGCCGC
GGTCGGTGTTTTCAAAGCAATGCACCGTAGTCAGCAAAAGTCCCAAGTCG
ATGCGGCGCAAGCGATTGAGTGTGCGGAGGCTATCATAGAGGGCGAGGCT
CGGTTGCGACACCTGGAAGCCGCCCTGCAGCAATTGGTGGGGCAGAGGGA
CACAGCGCGTCGCATGGATATGGCGCGACAAGttgcagaggaaggaaagc
agcggGACGGGAAGATACACGGACGAAGCGAGTTAAAGCCCCTGGCAAGC
GACCAAGATGAGACACTGATGAGCATGGACTCGGAGCCCGAGGGGGAATT
GCACGCCTCCGGCGACACCCAAACTGACACGATTTTTTCAAATGAGTGGC
TCGTCCACGAGATCTGCGTCTTGCCCAAGTCTCGCTTCTTGCAAGTGTCA
ATGGAAGATGCGTCTCAGCCACTTACCTGCGGCAATAAGCCAAGCCAGGG
AGACACACAGGCGTACTGGGAGACAGTCACTCAAACACTCTTGATGGGTG
ATTTTTCGCCGCTCTTGGTGCTGGTGCAGGAGCTGGCAGACCGCTTGATT
TCGATGACTCCGTCCCGCGCGGACCTCAGGGACGAGATCCTCGGGTCCTT
GGACGTCGCCCTTCTCAAGCAGGTGCTCAGCAAGGACTTGCTGGACTcgc
agctcctcttctccatccttcgATTCACGGGACGACGAATCCTGTGCCTG
GAGGCGCCTGCCCGCAACGCATCCACAGAAAGGTGGCTGGTCCGCTTGAA
AGAGCTGGAAGATCGGGTGTTGCAGCAGGCGGGGGGTCCGTGTGTCAGGC
TCTCTCTGCAGGACAGTACGGTCTCGAAGCAGTGGGTCCCCTCTATCAGC
CCCCTCTTCGAGTTCCTTTTGGAAAAAGTGGACCAAATCCACGTCGACAT
CTTCAATTCCCATATCCGCCGGGCGACGCCGCATTGCCGGGCCCACGGCC
CTTCCTTCGAACGCTCCCAATTTGAGGAGCGCCTGGCTCAGGGGCTCACG
TCCGTGGACAGGGTGCTGTCCTGGCTCCGAGGGGTGGTAGCCTCCGCGTG
GTGCCAGGAGCAGTCCATGCCCGTCTCGAGTCTTCGACACGGTGACCAAC
GCGTGGCCCTCTTGGAGGGCGTGCGACAGCAAAGCGGGGAGGCGATGCGG
ACACTGCTGCGACGGGCGTACGCCTCTCTGTTGGCAGACTCGTCCCGTCA
AGGCCGGCCCGTGTCGGTGTTTTCGGAGGACGATCTTCCCGAGACACTGG
CCATAGACGCTCAGCGACTGGGCTTGGCACGGCATGCCCTGTGGTGCGTG
GCCAGCGCAGGCACCGTGGTTGCGTACCTCGGACAGGCTCTGGGTCGGCA
GCTGCGGGCGGAGGAACGtcaggtggtggtgcaggAGCTGATGGTGCTGT
TGCCGGAGGCTGatgtggaggtggaggacatcgGCCTGCACGTTGGGCAC
ATCGCGAGTACCAGGCTGGGGATgacaggggcgggggagaggaagatgat
ggaggagcgcGTGAGACGCTTGCTGCAGGAAGGACGCTGCCCGGTGTTCC
AACTGTTGTATCAACGCGCGGTGGACGTGGTGCACGCGGTCCTGGAGCGA
GAGGAGTCGACAACGGAGGATGAGTCCGGGCGAGTGGCGCACCTCTGCCA
GCAACAGGGGCTGACGGGGATGGAGAGCCGGATTTTGAAGATATGTGATG
TCATGCTGCTCGTCACGCGCCACAACGAGGcgtgcttcctctccctgtac
CAGAAACTGGTGTCCGATGCGCTCAGGAGCGAGTGATGTACACATTCGAT
AGGCAAATTCGGTTTTCAAAAAAGTAGAACAGGATGTACATGGAAAGCCA
ACTGTTTAAAATGCGTTTCTGAAAGCATGTGACCAAATGGTCGTTGATCT
TTTTCACGTGAAACGAATAAGAGACATACTCCTATC

Coding sequence (CDS) from alignment at CM002456.1:1028109..1031294+

>rna1041 ID=rna1041|Name=rna1041|organism=Nannochloropsis gaditana|type=CDS|length=2829bp|location=Sequence derived from alignment at CM002456.1:1028109..1031294+ (Nannochloropsis gaditana)
ATGATGAAAACCACTGCTGCTCCTGAAAGCACACAATGTGTCGCTGCAGC
TATCGTCAACGTGACGTCAGAGACCAGCTCAAAACCTTCCAGTGAGACGA
GTCTTCCACCGCAgccgtccttgtcttccgAGGCGGGCATCGTCGCCACA
TCTAAGCATATGCTACGCGCCACCCCCGAAGAACGGGCAGTGTCCTACTC
ATGTATGCAGAGTAGCGAGCGTATTGGAGGTCAGGTCGGCTCCCCTGCAT
CTTCTGGAGGCCTGAATCTTGGAAAAAGGCGGATCGCCCAGTCGGAGACC
TCTACGTTCCAGAGTCCACGCCACCTCAAGCACCAGgtctcgtcctcgtc
atACCTCCCGCAGCCGAGGACAGCTCGCAAGAATAAGTCTGCGCAACTGC
TCGATTTCCTTCGAGATGGCATCAAAACTCAGCAGCATTCCTGCCAAGCG
CTGGGAATGGCCCGGGAACATGCCATTCTGGTCCTTCAACGCTGGTTCCG
AAACCTACGAGAGCATTGGCGGCTGGTGAAACAGGTCCAAGAAGCGACCA
GCCAGTCGTTATTGCCCTTGTTGGAGGCTGCGGAGGCTTCAAGAGCGGGC
TCGTGGGCGTCGGAGTGGGAGGCGATGTGCCGGCAGGGTAGCCTCGAGTT
TCATGCGTGCCACATGCTGCAGGGGCTGGGCTTCGCCCGCGAAGGGCAGG
CAGCGGACAAGTCGCTTACACATCCCATGACCTTACTATCTGCATTACTG
ATATCTGTGCACCCTGAGGCTATCATGACTGCTTCGCCTGTCAGGAGCAA
GCGCCGACGCCGAGAGCACGAGCGACGAGGGATCGCTCTTGTCCAGGCGG
CGTCGCGGGTGCACGAGACTTTGCTGGCATTGTACCACTGCCTGCATCAA
GCGAAGATGCCGCGATGGGTAATGCTGCGAGCGGTGGTTCAGGTCCGTAA
GGCCTTCCGCCTCTACGTCGTCCAACGAGTGCGATACCAAGGAGTGTCAG
ACGCGGAGGCGGCCCGCTTGGTTCGACGCGTCACACACGCCGCGGTCGGT
GTTTTCAAAGCAATGCACCGTAGTCAGCAAAAGTCCCAAGTCGATGCGGC
GCAAGCGATTGAGTGTGCGGAGGCTATCATAGAGGGCGAGGCTCGGTTGC
GACACCTGGAAGCCGCCCTGCAGCAATTGGTGGGGCAGAGGGACACAGCG
CGTCGCATGGATATGGCGCGACAAGttgcagaggaaggaaagcagcggGA
CGGGAAGATACACGGACGAAGCGAGTTAAAGCCCCTGGCAAGCGACCAAG
ATGAGACACTGATGAGCATGGACTCGGAGCCCGAGGGGGAATTGCACGCC
TCCGGCGACACCCAAACTGACACGATTTTTTCAAATGAGTGGCTCGTCCA
CGAGATCTGCGTCTTGCCCAAGTCTCGCTTCTTGCAAGTGTCAATGGAAG
ATGCGTCTCAGCCACTTACCTGCGGCAATAAGCCAAGCCAGGGAGACACA
CAGGCGTACTGGGAGACAGTCACTCAAACACTCTTGATGGGTGATTTTTC
GCCGCTCTTGGTGCTGGTGCAGGAGCTGGCAGACCGCTTGATTTCGATGA
CTCCGTCCCGCGCGGACCTCAGGGACGAGATCCTCGGGTCCTTGGACGTC
GCCCTTCTCAAGCAGGTGCTCAGCAAGGACTTGCTGGACTcgcagctcct
cttctccatccttcgATTCACGGGACGACGAATCCTGTGCCTGGAGGCGC
CTGCCCGCAACGCATCCACAGAAAGGTGGCTGGTCCGCTTGAAAGAGCTG
GAAGATCGGGTGTTGCAGCAGGCGGGGGGTCCGTGTGTCAGGCTCTCTCT
GCAGGACAGTACGGTCTCGAAGCAGTGGGTCCCCTCTATCAGCCCCCTCT
TCGAGTTCCTTTTGGAAAAAGTGGACCAAATCCACGTCGACATCTTCAAT
TCCCATATCCGCCGGGCGACGCCGCATTGCCGGGCCCACGGCCCTTCCTT
CGAACGCTCCCAATTTGAGGAGCGCCTGGCTCAGGGGCTCACGTCCGTGG
ACAGGGTGCTGTCCTGGCTCCGAGGGGTGGTAGCCTCCGCGTGGTGCCAG
GAGCAGTCCATGCCCGTCTCGAGTCTTCGACACGGTGACCAACGCGTGGC
CCTCTTGGAGGGCGTGCGACAGCAAAGCGGGGAGGCGATGCGGACACTGC
TGCGACGGGCGTACGCCTCTCTGTTGGCAGACTCGTCCCGTCAAGGCCGG
CCCGTGTCGGTGTTTTCGGAGGACGATCTTCCCGAGACACTGGCCATAGA
CGCTCAGCGACTGGGCTTGGCACGGCATGCCCTGTGGTGCGTGGCCAGCG
CAGGCACCGTGGTTGCGTACCTCGGACAGGCTCTGGGTCGGCAGCTGCGG
GCGGAGGAACGtcaggtggtggtgcaggAGCTGATGGTGCTGTTGCCGGA
GGCTGatgtggaggtggaggacatcgGCCTGCACGTTGGGCACATCGCGA
GTACCAGGCTGGGGATgacaggggcgggggagaggaagatgatggaggag
cgcGTGAGACGCTTGCTGCAGGAAGGACGCTGCCCGGTGTTCCAACTGTT
GTATCAACGCGCGGTGGACGTGGTGCACGCGGTCCTGGAGCGAGAGGAGT
CGACAACGGAGGATGAGTCCGGGCGAGTGGCGCACCTCTGCCAGCAACAG
GGGCTGACGGGGATGGAGAGCCGGATTTTGAAGATATGTGATGTCATGCT
GCTCGTCACGCGCCACAACGAGGcgtgcttcctctccctgtacCAGAAAC
TGGTGTCCGATGCGCTCAGGAGCGAGTGA

Synonyms

Publications