jgi.p|Nanoce1779_2|598635, mRNA_7403 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598635
Unique NamemRNA_7403
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1317
Alignment locationscaffold_19:431476..433200 +

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Properties
Property NameValue
TranscriptId598721
TrackFilteredModels2
ProteinId598635
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:431476..433200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598635gene_7403Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598635mRNA_7403-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7403CDS_7403Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7403 ID=mRNA_7403|Name=jgi.p|Nanoce1779_2|598635|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp
ACAGCAAAAGCCCGAGTTTTGGCCACGGCGTACCCCTGTATACACACCGC
AAAGGCCACCACCCCTCTCCTCCTTATCTTCCTCTTCTTTATCATGTCCG
TTGCCGAGGCCTTCAAAGCAGAGGGCCATAATGCCTTTGTCATCGGATGG
ACGGGTGAAGTTGGGAAGGAAGTCGTCAAGTCTTTGGCGGCGATGGACTT
ATACAATAAAGTGTATTTGATTGGAAGACGAAATGCGGAGCTGCCCACGG
GGCCGGGCTTCGAGAAGATGGAGCAACGCATCCTGGACTTCGATCTCCTC
CTTTCCGATCCTCCTTCTCCTACTGCCGTTGCTGCATTTGCCGGGGCGGA
TGTAGGCTTTTGCTGCTTGGGGACGACGAGGGGAAAGAGCGGAGTGGAGG
GTTTCGTCAAGGTCGATCACGACTACGTTGTCGGCGCCGCCCGGGCAGCC
AAAGCCAATCTGAATGCCTTTCACGTCGTAACGTCCGTAGGGAGCAACGC
CAAGTCCCCCCTCCTATATCCCAAGACCAAGGGACGGACGGAAGAAGACT
TGAAAGCGTTGGACCTCCCCCGTTTGTGTATTTACCGCCCTGGCGTATTG
ATGTGCGATCGAGGAGAGAAGCGGGTGATGGAGCGGATGTCACGCTTTTT
CTTGACGCCGCTGGCCGTGCTGGCGCCGACTGTTATGACCATCCCCACCT
CTACCCTGGGGAAGGCGATGGTGATCAAGTCTGCCATGGAGGGCGACAAA
GTGGAAACACTAGAGAATGGTCCGATTCATGCCGTGGCGAAATCGGGATT
GTAAGGGGGGGAAAGTTGCAGAGAGGCTCGTTCTGCTGCCGTGAACGACT
TTTTCCCCTACAAATGAAATGGTAAGGGGCCAGATTGTGGAAGTAGTGGC
AATATTAAGGTTCTGATGCACACTATGGTAAAGAAATAATCGTGAGGACG
AAAGAAAGGAGGTGGGATGAAGAAGAGGCAGAGGGAAGATTTGCAAGTAT
GAGAATGTGTGAGTGACGGAAAGGAGTGGGGAGAGGGAGAGGACGAGACA
CAAGGAGAGAGGAGTAAAAGAAAAGGAAGGGGAAAGAAACACGAAGGTAA
CCACCTCTTGTGCATCATGTATGGCGATGGGGGAGAAGATCAAGAATAAT
AACAATCACAAGAGCTGAATAGAAAAAGGGGGGAAAATGCGGGCGGCGGT
AGACCCAAACAAAGAGAAAACAAACAATGGAGGCTACTAGGCAATGCTAG
ACGAATCAATCGCGAATATCGTCAAAAGGCCGAATTAAAGGAGACCTGAG
GAGATTTAAGATATTGA
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protein sequence of jgi.p|Nanoce1779_2|598635

>mRNA_7403-protein ID=mRNA_7403-protein|Name=jgi.p|Nanoce1779_2|598635|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MSVAEAFKAEGHNAFVIGWTGEVGKEVVKSLAAMDLYNKVYLIGRRNAEL
PTGPGFEKMEQRILDFDLLLSDPPSPTAVAAFAGADVGFCCLGTTRGKSG
VEGFVKVDHDYVVGAARAAKANLNAFHVVTSVGSNAKSPLLYPKTKGRTE
EDLKALDLPRLCIYRPGVLMCDRGEKRVMERMSRFFLTPLAVLAPTVMTI
PTSTLGKAMVIKSAMEGDKVETLENGPIHAVAKSGL*
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mRNA from alignment at scaffold_19:431476..433200+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7403 ID=mRNA_7403|Name=jgi.p|Nanoce1779_2|598635|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at scaffold_19:431476..433200+ (Nannochloropsis oceanica)
ACAGCAAAAGCCCGAGTTTTGGCCACGGCGTACCCCTGTATACACACCGC AAAGGCCACCACCCCTCTCCTCCTTATCTTCCTCTTCTTTATCATGTCCG TTGCCGAGGCCTTCAAAGCAGAGGGCCATAATGCCTTTGTCATCGGATGG ACGGGTGAAGTTGGGAAGGAAGTCGTCAAGGTAAGTCTGCCTCCCCCCAA TCCTCTGTCCCCTCCAATGTCTCATACTCACACCAACGCCCACGGCTTAT GTAATATATATAGTCTTTGGCGGCGATGGACTTATACAATAAAGTGTATT TGATTGGAAGACGAAATGCGGAGCTGCCCACGGGGCCGGGCTTCGAGAAG ATGGTACGTCACAAACCTGTGAGAGGGTGGGGTGGGGCTGGGGTGTGGTT TGGTTTGGTGCCTCCATGCCCCTCTTACCCTTCCTCATTCTCGGTCATAT GTTTCCCTTTCTCCTAAGTAGACATATGTTTCTGCATGGTCTATTTTCCT TGCTGTCAAACCCACCACTGACTCTCCTCCCTCTGTTCCTGTGTTTCTCT TTTTCTCTCTCTTTCCCTTCCTCTCTCCCTCCCACAACAGGAGCAACGCA TCCTGGACTTCGATCTCCTCCTTTCCGATCCTCCTTCTCCTACTGCCGTT GCTGCATTTGCCGGGGCGGATGTAGGCTTTTGCTGCTTGGGGACGACGAG GGGAAAGAGCGGAGTGGAGGGTTTCGTCAAGGTAAGGGGAAAAAATGAAC AATTTAAGTATTGAATGATTGAATGAGTGAATTGTCGATCCAATGATCAA ACCACTCACTCCTGTCTAGGTCGATCACGACTACGTTGTCGGCGCCGCCC GGGCAGCCAAAGCCAATCTGAATGCCTTTCACGTCGTAACGTCCGTAGGG AGCAACGCCAAGTCCCCCCTCCTATATCCCAAGACCAAGGGACGGACGGA AGAAGACTTGAAAGCGTTGGACCTCCCCCGTTTGTGTATTTACCGCCCTG GCGTATTGATGTGCGATCGAGGAGAGAAGCGGGTGATGGAGCGGATGTCA CGCTTTTTCTTGACGCCGCTGGCCGTGCTGGCGCCGACTGTTATGACCAT CCCCACCTCTACCCTGGGGAAGGCGATGGTGATCAAGTCTGCCATGGAGG GCGACAAAGTGGAAACACTAGAGAATGGTCCGATTCATGCCGTGGCGAAA TCGGGATTGTAAGGGGGGGAAAGTTGCAGAGAGGCTCGTTCTGCTGCCGT GAACGACTTTTTCCCCTACAAATGAAATGGTAAGGGGCCAGATTGTGGAA GTAGTGGCAATATTAAGGTTCTGATGCACACTATGGTAAAGAAATAATCG TGAGGACGAAAGAAAGGAGGTGGGATGAAGAAGAGGCAGAGGGAAGATTT GCAAGTATGAGAATGTGTGAGTGACGGAAAGGAGTGGGGAGAGGGAGAGG ACGAGACACAAGGAGAGAGGAGTAAAAGAAAAGGAAGGGGAAAGAAACAC GAAGGTAACCACCTCTTGTGCATCATGTATGGCGATGGGGGAGAAGATCA AGAATAATAACAATCACAAGAGCTGAATAGAAAAAGGGGGGAAAATGCGG GCGGCGGTAGACCCAAACAAAGAGAAAACAAACAATGGAGGCTACTAGGC AATGCTAGACGAATCAATCGCGAATATCGTCAAAAGGCCGAATTAAAGGA GACCTGAGGAGATTTAAGATATTGA
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Coding sequence (CDS) from alignment at scaffold_19:431476..433200+

>mRNA_7403 ID=mRNA_7403|Name=jgi.p|Nanoce1779_2|598635|organism=Nannochloropsis oceanica|type=CDS|length=2844bp|location=Sequence derived from alignment at scaffold_19:431476..433200+ (Nannochloropsis oceanica)
ATGTCCGTTGCCGAGGCCTTCAAAGCAGAGGGCCATAATGCCTTTGTCAT
CGGATGGACGGGTGAAGTTGGGAAGGAAGTCGTCAAGTCTTTGGCGGCGA
TGGACTTATACAATAAAGTGTATTTGATTGGAAGACGAAATGCGGAGCTG
CCCACGGGGCCGGGCTTCGAGAAGATGGAGCAACGCATCCTGGACTTCGA
TCTCCTCCTTTCCGATCCTCCTTCTCCTACTGCCGTTGCTGCATTTGCCG
GGGCGGATGTAGGCTTTTGCTGCTTGGGGACGACGAGGGGAAAGAGCGGA
GTGGAGGGTTTCGTCAAGGTCGATCACGACTACGTTGTCGGCGCCGCCCG
GGCAGCCAAAGCCAATCTGAATGCCTTTCACGTCGTAACGTCCGTAGGGA
GCAACGCCAAGTCCCCCCTCCTATATCCCAAGACCAAGGGACGGACGGAA
GAAGACTTGAAAGCGTTGGACCTCCCCCGTTTGTGTATTTACCGCCCTGG
CGTATTGATGTGCGATCGAGGAGAGAAGCGGGTGATGGAGCGGATGTCAC
GCTTTTTCTTGACGCCGCTGGCCGTGCTGGCGCCGACTGTTATGACCATC
CCCACCTCTACCCTGGGGAAGGCGATGGTGATCAAGTCTGCCATGGAGGG
CGACAAAGTGGAAACACTAGAGAATGGTCCGATTCATGCCGTGGCGAAAT
CGGGATTGTAAATGTCCGTTGCCGAGGCCTTCAAAGCAGAGGGCCATAAT
GCCTTTGTCATCGGATGGACGGGTGAAGTTGGGAAGGAAGTCGTCAAGTC
TTTGGCGGCGATGGACTTATACAATAAAGTGTATTTGATTGGAAGACGAA
ATGCGGAGCTGCCCACGGGGCCGGGCTTCGAGAAGATGGAGCAACGCATC
CTGGACTTCGATCTCCTCCTTTCCGATCCTCCTTCTCCTACTGCCGTTGC
TGCATTTGCCGGGGCGGATGTAGGCTTTTGCTGCTTGGGGACGACGAGGG
GAAAGAGCGGAGTGGAGGGTTTCGTCAAGGTCGATCACGACTACGTTGTC
GGCGCCGCCCGGGCAGCCAAAGCCAATCTGAATGCCTTTCACGTCGTAAC
GTCCGTAGGGAGCAACGCCAAGTCCCCCCTCCTATATCCCAAGACCAAGG
GACGGACGGAAGAAGACTTGAAAGCGTTGGACCTCCCCCGTTTGTGTATT
TACCGCCCTGGCGTATTGATGTGCGATCGAGGAGAGAAGCGGGTGATGGA
GCGGATGTCACGCTTTTTCTTGACGCCGCTGGCCGTGCTGGCGCCGACTG
TTATGACCATCCCCACCTCTACCCTGGGGAAGGCGATGGTGATCAAGTCT
GCCATGGAGGGCGACAAAGTGGAAACACTAGAGAATGGTCCGATTCATGC
CGTGGCGAAATCGGGATTGTAAATGTCCGTTGCCGAGGCCTTCAAAGCAG
AGGGCCATAATGCCTTTGTCATCGGATGGACGGGTGAAGTTGGGAAGGAA
GTCGTCAAGTCTTTGGCGGCGATGGACTTATACAATAAAGTGTATTTGAT
TGGAAGACGAAATGCGGAGCTGCCCACGGGGCCGGGCTTCGAGAAGATGG
AGCAACGCATCCTGGACTTCGATCTCCTCCTTTCCGATCCTCCTTCTCCT
ACTGCCGTTGCTGCATTTGCCGGGGCGGATGTAGGCTTTTGCTGCTTGGG
GACGACGAGGGGAAAGAGCGGAGTGGAGGGTTTCGTCAAGGTCGATCACG
ACTACGTTGTCGGCGCCGCCCGGGCAGCCAAAGCCAATCTGAATGCCTTT
CACGTCGTAACGTCCGTAGGGAGCAACGCCAAGTCCCCCCTCCTATATCC
CAAGACCAAGGGACGGACGGAAGAAGACTTGAAAGCGTTGGACCTCCCCC
GTTTGTGTATTTACCGCCCTGGCGTATTGATGTGCGATCGAGGAGAGAAG
CGGGTGATGGAGCGGATGTCACGCTTTTTCTTGACGCCGCTGGCCGTGCT
GGCGCCGACTGTTATGACCATCCCCACCTCTACCCTGGGGAAGGCGATGG
TGATCAAGTCTGCCATGGAGGGCGACAAAGTGGAAACACTAGAGAATGGT
CCGATTCATGCCGTGGCGAAATCGGGATTGTAAATGTCCGTTGCCGAGGC
CTTCAAAGCAGAGGGCCATAATGCCTTTGTCATCGGATGGACGGGTGAAG
TTGGGAAGGAAGTCGTCAAGTCTTTGGCGGCGATGGACTTATACAATAAA
GTGTATTTGATTGGAAGACGAAATGCGGAGCTGCCCACGGGGCCGGGCTT
CGAGAAGATGGAGCAACGCATCCTGGACTTCGATCTCCTCCTTTCCGATC
CTCCTTCTCCTACTGCCGTTGCTGCATTTGCCGGGGCGGATGTAGGCTTT
TGCTGCTTGGGGACGACGAGGGGAAAGAGCGGAGTGGAGGGTTTCGTCAA
GGTCGATCACGACTACGTTGTCGGCGCCGCCCGGGCAGCCAAAGCCAATC
TGAATGCCTTTCACGTCGTAACGTCCGTAGGGAGCAACGCCAAGTCCCCC
CTCCTATATCCCAAGACCAAGGGACGGACGGAAGAAGACTTGAAAGCGTT
GGACCTCCCCCGTTTGTGTATTTACCGCCCTGGCGTATTGATGTGCGATC
GAGGAGAGAAGCGGGTGATGGAGCGGATGTCACGCTTTTTCTTGACGCCG
CTGGCCGTGCTGGCGCCGACTGTTATGACCATCCCCACCTCTACCCTGGG
GAAGGCGATGGTGATCAAGTCTGCCATGGAGGGCGACAAAGTGGAAACAC
TAGAGAATGGTCCGATTCATGCCGTGGCGAAATCGGGATTGTAA
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Synonyms
Publications