jgi.p|Nanoce1779_2|598635, gene_7403 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598635
Unique Namegene_7403
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_19:431476..433200 +

Link to JBrowse

Properties
Property NameValue
TranscriptId598721
ProteinId598635
Product nameHIV-1 Tat interactive protein 2
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:431476..433200 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000252C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity
GO:00002533-keto sterol reductase activity
GO:0004033aldo-keto reductase (NADP) activity
GO:0004448isocitrate dehydrogenase activity
GO:0004495mevaldate reductase activity
GO:0008875gluconate dehydrogenase activity
GO:0016229steroid dehydrogenase activity
GO:0018451epoxide dehydrogenase activity
GO:00184525-exo-hydroxycamphor dehydrogenase activity
GO:00184532-hydroxytetrahydrofuran dehydrogenase activity
GO:0032442phenylcoumaran benzylic ether reductase activity
GO:0033764steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0033765steroid dehydrogenase activity, acting on the CH-CH group of donors
GO:0043713(R)-2-hydroxyisocaproate dehydrogenase activity
GO:00482583-ketoglucose-reductase activity
GO:0051990(R)-2-hydroxyglutarate dehydrogenase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL030ncniL030Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01790NO24G01790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598635mRNA_7403-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598635mRNA_7403Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|598635

>mRNA_7403-protein ID=mRNA_7403-protein|Name=jgi.p|Nanoce1779_2|598635|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MSVAEAFKAEGHNAFVIGWTGEVGKEVVKSLAAMDLYNKVYLIGRRNAEL
PTGPGFEKMEQRILDFDLLLSDPPSPTAVAAFAGADVGFCCLGTTRGKSG
VEGFVKVDHDYVVGAARAAKANLNAFHVVTSVGSNAKSPLLYPKTKGRTE
EDLKALDLPRLCIYRPGVLMCDRGEKRVMERMSRFFLTPLAVLAPTVMTI
PTSTLGKAMVIKSAMEGDKVETLENGPIHAVAKSGL*
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Synonyms
Publications