jgi.p|Nanoce1779_2|598161, mRNA_7300 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598161
Unique Name	mRNA_7300
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1894
Alignment location	scaffold_19:162862..164854 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598247
Track	FilteredModels2
ProteinId	598161

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:162862..164854 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598161	gene_7300	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598161	mRNA_7300-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7300	CDS_7300	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:162862..164854+
coding sequence from alignment at scaffold_19:162862..164854+

mRNA sequence

>mRNA_7300 ID=mRNA_7300|Name=jgi.p|Nanoce1779_2|598161|organism=Nannochloropsis oceanica|type=mRNA|length=1894bp
ACAGCGACTGCTCAGGCGGAAAGGCAAGCCAGCATCAGTTAGGATGAACG
GACGCTTCAAAGATGTACCGCTACTTCCACCAGATGCGATCATCGACCTC
AATCGGCAGATCATGGTCGACACTAATCCCTGCAAAGTCGACCTAGGAGT
CGGTGCCTACAGGGACAGCCACGGTAAGCCCTACATCCTAGACGTCGTCA
AGGCCGCCGAGGCCCGCGTCATCGCCGACCCTATGTACAACCACGAGTAC
GTCCCCATTGAAGGTTGGGCTCCCTTCCGCCTCGCCAGCCAACAAGTGCT
CTTCGGGGCAGCACATCCTGTGCTCACCGCGGGGAAACTAGCGACAGTCC
AAGCCCTGTCTGGGACGGGTGCTTTGCGGATAGGCTTCGAGTTCTTGCGA
CGGCACGTGCAGCAGCCACCTGTGGTGTATTTACCCAGCCACACTTGGGG
GAACCATCTTAAAGTCGTGCACGAAAGTGGGATCAGCGACGTTCGAAAAT
ATCGGTACTATGACCCGAGTACGCTGAGTCTGGATATCGAGGGGATGTGC
GCAGACCTTGCTGCTGCTCCTGCTGGTAGCATTATTTTGTTGCACACCTC
GGGGCACAACCCCGTCGGATTTGATCCGTCCGCGGAGGATTGGCAGAGGC
TGGCCCGGTTGTGCATGGAAGGGGGCCTGTTGCCGTTTTTCGACAATGCC
TACCAAGGCTACACGAGTGGGAGCCTGGAGGATGACGCCTACTCGGTCCG
CCTATTCGCCTCCCTCGGGATGGATCTCTTTTGCGCGTGCTCCTTCGCCA
AAAATATGGGCCTGTACGGAGAGCGCGTGGGGGCCTTGCATGCCCTTGTA
TCCTCCCCTGCAGAGGCCCAGATCCTCGTGAGCCAGTTCCAGGCGATCAT
CCGGCCCATGTACTCTTCTCCTCCGTCGCATTACGCGCGCGTGGCGGGGT
TAATATTGTCGGACCCAGCACTCTCAAGCCAATGGCAAGCGGAGTTGCGG
GAGATGGCAGCGAGGATCCAGAGGATGAGGACGCTGTTTTTGGAGGCGTT
GGCGGAGAGCGGGTGTCCGGGCCAGTGGGGGCACCTGGCGCGACAGAGAG
GCATGTTCGGGTTTACGGGGCTGGAGAGGGAGGAGGTGGGGAGGTTGAAA
AAGGAGTTTTCGATTTACATGCTGGAGAATGGGCGCATTTCTTTGAGTGG
CTTCAACGAGGGCAATGTGGCTTATGTGGCTCGGGCATTCGCCGCGGTGC
TGGCTGGAAGGGCGAGCACGCCGGGGGCTGCCTGCGCGGCAAGGATAGAG
GAGAAGGAAGGGGTAGAGGTGGAAACGATGGCGATGGCGTCGTCGTCTGG
TAGGCCGGAGTGCGAGGGCTTGGGAGATGGGAGGGTGGAGATGAACGCGT
CGCCACAGAATGCCCCGCACCTTTGAGTCCACATATAGCACAGCGCTTGA
GTTAGCTGTGTTCTTTTTAGAGGAAGGTGGAGATGAGAAGAATAGAGTGA
GAGTTAGGAGGAGAGAGAGAGCTCAGAAAAGAAAAAAGAGATAACATATA
GAGGGAGAGGTAAGTAAGAGAAGGAAAGAAAGAGAGAGAGAGAGAAAGAG
AGAAAGAAAAGAGAGAGAAAGACCACCACACTACCTGATGCCGCGTGTGT
GTGTCATCCCCCTTTCTTACGATCGCAGGCGGGTCTTTAGGGCTTCAGAT
TGGGCCTTGGGGTGTTTGGGTGTGTGATTGCGCGCCTTTGGACGGTGTCT
GTGCATGAGTGCATGAGGAACGGGATGAATGACTTTGACACATTTTGGAT
AACAGGAAAACTAAGAGGGATGGAAATGAGAAAGACGATAGTACATATCG
TGTTGCATTGATATTGAAAAGTGTAAAAGCAAAATTATTGTGTC

protein sequence of jgi.p|Nanoce1779_2|598161

>mRNA_7300-protein ID=mRNA_7300-protein|Name=jgi.p|Nanoce1779_2|598161|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MNGRFKDVPLLPPDAIIDLNRQIMVDTNPCKVDLGVGAYRDSHGKPYILD
VVKAAEARVIADPMYNHEYVPIEGWAPFRLASQQVLFGAAHPVLTAGKLA
TVQALSGTGALRIGFEFLRRHVQQPPVVYLPSHTWGNHLKVVHESGISDV
RKYRYYDPSTLSLDIEGMCADLAAAPAGSIILLHTSGHNPVGFDPSAEDW
QRLARLCMEGGLLPFFDNAYQGYTSGSLEDDAYSVRLFASLGMDLFCACS
FAKNMGLYGERVGALHALVSSPAEAQILVSQFQAIIRPMYSSPPSHYARV
AGLILSDPALSSQWQAELREMAARIQRMRTLFLEALAESGCPGQWGHLAR
QRGMFGFTGLEREEVGRLKKEFSIYMLENGRISLSGFNEGNVAYVARAFA
AVLAGRASTPGAACAARIEEKEGVEVETMAMASSSGRPECEGLGDGRVEM
NASPQNAPHL*

mRNA from alignment at scaffold_19:162862..164854+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7300 ID=mRNA_7300|Name=jgi.p|Nanoce1779_2|598161|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp|location=Sequence derived from alignment at scaffold_19:162862..164854+ (Nannochloropsis oceanica)
ACAGCGACTGCTCAGGCGGAAAGGCAAGCCAGCATCAGTTAGGATGAACG
GACGCTTCAAAGATGTACCGCTACTTCCACCAGATGCGATCATCGACCTC
AATCGGCAGATCATGGTGAGAAATGATCCCCAAAAGATCGACCTCCAACA
CACCTACCATTCTCTCTCCATCTCACTCCCTCCCTCCACCCCTCTCCACC
CTCCTGTAAAATAGGTCGACACTAATCCCTGCAAAGTCGACCTAGGAGTC
GGTGCCTACAGGGACAGCCACGGTAAGCCCTACATCCTAGACGTCGTCAA
GGCCGCCGAGGCCCGCGTCATCGCCGACCCTATGTACAACCACGAGTACG
TCCCCATTGAAGGTTGGGCTCCCTTCCGCCTCGCCAGCCAACAAGTGCTC
TTCGGGGCAGCACATCCTGTGCTCACCGCGGGGAAACTAGCGACAGTCCA
AGCCCTGTCTGGGACGGGTGCTTTGCGGATAGGCTTCGAGTTCTTGCGAC
GGCACGTGCAGCAGCCACCTGTGGTGTATTTACCCAGCCACACTTGGGGG
AACCATCTTAAAGTCGTGCACGAAAGTGGGATCAGCGACGTTCGAAAATA
TCGGTACTATGACCCGAGTACGCTGAGTCTGGATATCGAGGGGATGTGCG
CAGACCTTGCTGCTGCTCCTGCTGGTAGCATTATTTTGTTGCACACCTCG
GGGCACAACCCCGTCGGATTTGATCCGTCCGCGGAGGATTGGCAGAGGCT
GGCCCGGTTGTGCATGGAAGGGGGCCTGTTGCCGTTTTTCGACAATGCCT
ACCAAGGCTACACGAGTGGGAGCCTGGAGGATGACGCCTACTCGGTCCGC
CTATTCGCCTCCCTCGGGATGGATCTCTTTTGCGCGTGCTCCTTCGCCAA
AAATATGGGCCTGTACGGAGAGCGCGTGGGGGCCTTGCATGCCCTTGTAT
CCTCCCCTGCAGAGGCCCAGATCCTCGTGAGCCAGTTCCAGGCGATCATC
CGGCCCATGTACTCTTCTCCTCCGTCGCATTACGCGCGCGTGGCGGGGTT
AATATTGTCGGACCCAGCACTCTCAAGCCAATGGCAAGCGGAGTTGCGGG
AGATGGCAGCGAGGATCCAGAGGATGAGGACGCTGTTTTTGGAGGCGTTG
GCGGAGAGCGGGTGTCCGGGCCAGTGGGGGCACCTGGCGCGACAGAGAGG
CATGTTCGGGTTTACGGGGCTGGAGAGGGAGGAGGTGGGGAGGTTGAAAA
AGGAGTTTTCGATTTACATGCTGGAGAATGGGCGCATTTCTTTGAGTGGC
TTCAACGAGGGCAATGTGGCTTATGTGGCTCGGGCATTCGCCGCGGTGCT
GGCTGGAAGGGCGAGCACGCCGGGGGCTGCCTGCGCGGCAAGGATAGAGG
AGAAGGAAGGGGTAGAGGTGGAAACGATGGCGATGGCGTCGTCGTCTGGT
AGGCCGGAGTGCGAGGGCTTGGGAGATGGGAGGGTGGAGATGAACGCGTC
GCCACAGAATGCCCCGCACCTTTGAGTCCACATATAGCACAGCGCTTGAG
TTAGCTGTGTTCTTTTTAGAGGAAGGTGGAGATGAGAAGAATAGAGTGAG
AGTTAGGAGGAGAGAGAGAGCTCAGAAAAGAAAAAAGAGATAACATATAG
AGGGAGAGGTAAGTAAGAGAAGGAAAGAAAGAGAGAGAGAGAGAAAGAGA
GAAAGAAAAGAGAGAGAAAGACCACCACACTACCTGATGCCGCGTGTGTG
TGTCATCCCCCTTTCTTACGATCGCAGGCGGGTCTTTAGGGCTTCAGATT
GGGCCTTGGGGTGTTTGGGTGTGTGATTGCGCGCCTTTGGACGGTGTCTG
TGCATGAGTGCATGAGGAACGGGATGAATGACTTTGACACATTTTGGATA
ACAGGAAAACTAAGAGGGATGGAAATGAGAAAGACGATAGTACATATCGT
GTTGCATTGATATTGAAAAGTGTAAAAGCAAAATTATTGTGTC

Coding sequence (CDS) from alignment at scaffold_19:162862..164854+

>mRNA_7300 ID=mRNA_7300|Name=jgi.p|Nanoce1779_2|598161|organism=Nannochloropsis oceanica|type=CDS|length=2766bp|location=Sequence derived from alignment at scaffold_19:162862..164854+ (Nannochloropsis oceanica)
ATGAACGGACGCTTCAAAGATGTACCGCTACTTCCACCAGATGCGATCAT
CGACCTCAATCGGCAGATCATGGTCGACACTAATCCCTGCAAAGTCGACC
TAGGAGTCGGTGCCTACAGGGACAGCCACGGTAAGCCCTACATCCTAGAC
GTCGTCAAGGCCGCCGAGGCCCGCGTCATCGCCGACCCTATGTACAACCA
CGAGTACGTCCCCATTGAAGGTTGGGCTCCCTTCCGCCTCGCCAGCCAAC
AAGTGCTCTTCGGGGCAGCACATCCTGTGCTCACCGCGGGGAAACTAGCG
ACAGTCCAAGCCCTGTCTGGGACGGGTGCTTTGCGGATAGGCTTCGAGTT
CTTGCGACGGCACGTGCAGCAGCCACCTGTGGTGTATTTACCCAGCCACA
CTTGGGGGAACCATCTTAAAGTCGTGCACGAAAGTGGGATCAGCGACGTT
CGAAAATATCGGTACTATGACCCGAGTACGCTGAGTCTGGATATCGAGGG
GATGTGCGCAGACCTTGCTGCTGCTCCTGCTGGTAGCATTATTTTGTTGC
ACACCTCGGGGCACAACCCCGTCGGATTTGATCCGTCCGCGGAGGATTGG
CAGAGGCTGGCCCGGTTGTGCATGGAAGGGGGCCTGTTGCCGTTTTTCGA
CAATGCCTACCAAGGCTACACGAGTGGGAGCCTGGAGGATGACGCCTACT
CGGTCCGCCTATTCGCCTCCCTCGGGATGGATCTCTTTTGCGCGTGCTCC
TTCGCCAAAAATATGGGCCTGTACGGAGAGCGCGTGGGGGCCTTGCATGC
CCTTGTATCCTCCCCTGCAGAGGCCCAGATCCTCGTGAGCCAGTTCCAGG
CGATCATCCGGCCCATGTACTCTTCTCCTCCGTCGCATTACGCGCGCGTG
GCGGGGTTAATATTGTCGGACCCAGCACTCTCAAGCCAATGGCAAGCGGA
GTTGCGGGAGATGGCAGCGAGGATCCAGAGGATGAGGACGCTGTTTTTGG
AGGCGTTGGCGGAGAGCGGGTGTCCGGGCCAGTGGGGGCACCTGGCGCGA
CAGAGAGGCATGTTCGGGTTTACGGGGCTGGAGAGGGAGGAGGTGGGGAG
GTTGAAAAAGGAGTTTTCGATTTACATGCTGGAGAATGGGCGCATTTCTT
TGAGTGGCTTCAACGAGGGCAATGTGGCTTATGTGGCTCGGGCATTCGCC
GCGGTGCTGGCTGGAAGGGCGAGCACGCCGGGGGCTGCCTGCGCGGCAAG
GATAGAGGAGAAGGAAGGGGTAGAGGTGGAAACGATGGCGATGGCGTCGT
CGTCTGGTAGGCCGGAGTGCGAGGGCTTGGGAGATGGGAGGGTGGAGATG
AACGCGTCGCCACAGAATGCCCCGCACCTTTGAATGAACGGACGCTTCAA
AGATGTACCGCTACTTCCACCAGATGCGATCATCGACCTCAATCGGCAGA
TCATGGTCGACACTAATCCCTGCAAAGTCGACCTAGGAGTCGGTGCCTAC
AGGGACAGCCACGGTAAGCCCTACATCCTAGACGTCGTCAAGGCCGCCGA
GGCCCGCGTCATCGCCGACCCTATGTACAACCACGAGTACGTCCCCATTG
AAGGTTGGGCTCCCTTCCGCCTCGCCAGCCAACAAGTGCTCTTCGGGGCA
GCACATCCTGTGCTCACCGCGGGGAAACTAGCGACAGTCCAAGCCCTGTC
TGGGACGGGTGCTTTGCGGATAGGCTTCGAGTTCTTGCGACGGCACGTGC
AGCAGCCACCTGTGGTGTATTTACCCAGCCACACTTGGGGGAACCATCTT
AAAGTCGTGCACGAAAGTGGGATCAGCGACGTTCGAAAATATCGGTACTA
TGACCCGAGTACGCTGAGTCTGGATATCGAGGGGATGTGCGCAGACCTTG
CTGCTGCTCCTGCTGGTAGCATTATTTTGTTGCACACCTCGGGGCACAAC
CCCGTCGGATTTGATCCGTCCGCGGAGGATTGGCAGAGGCTGGCCCGGTT
GTGCATGGAAGGGGGCCTGTTGCCGTTTTTCGACAATGCCTACCAAGGCT
ACACGAGTGGGAGCCTGGAGGATGACGCCTACTCGGTCCGCCTATTCGCC
TCCCTCGGGATGGATCTCTTTTGCGCGTGCTCCTTCGCCAAAAATATGGG
CCTGTACGGAGAGCGCGTGGGGGCCTTGCATGCCCTTGTATCCTCCCCTG
CAGAGGCCCAGATCCTCGTGAGCCAGTTCCAGGCGATCATCCGGCCCATG
TACTCTTCTCCTCCGTCGCATTACGCGCGCGTGGCGGGGTTAATATTGTC
GGACCCAGCACTCTCAAGCCAATGGCAAGCGGAGTTGCGGGAGATGGCAG
CGAGGATCCAGAGGATGAGGACGCTGTTTTTGGAGGCGTTGGCGGAGAGC
GGGTGTCCGGGCCAGTGGGGGCACCTGGCGCGACAGAGAGGCATGTTCGG
GTTTACGGGGCTGGAGAGGGAGGAGGTGGGGAGGTTGAAAAAGGAGTTTT
CGATTTACATGCTGGAGAATGGGCGCATTTCTTTGAGTGGCTTCAACGAG
GGCAATGTGGCTTATGTGGCTCGGGCATTCGCCGCGGTGCTGGCTGGAAG
GGCGAGCACGCCGGGGGCTGCCTGCGCGGCAAGGATAGAGGAGAAGGAAG
GGGTAGAGGTGGAAACGATGGCGATGGCGTCGTCGTCTGGTAGGCCGGAG
TGCGAGGGCTTGGGAGATGGGAGGGTGGAGATGAACGCGTCGCCACAGAA
TGCCCCGCACCTTTGA

Synonyms

Publications