jgi.p|Nanoce1779_2|611083, mRNA_10338 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611083
Unique Name	mRNA_10338
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1648
Alignment location	scaffold_54:22627..24274 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	611169
Track	FilteredModels2
ProteinId	611083

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_54	supercontig	scaffold_54:22627..24274 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611083	gene_10338	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611083	mRNA_10338-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10338	CDS_10338	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_54:22627..24274+
coding sequence from alignment at scaffold_54:22627..24274+

mRNA sequence

>mRNA_10338 ID=mRNA_10338|Name=jgi.p|Nanoce1779_2|611083|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp
CAGCAGCACCAGCAGCATCAGCAGCGCCAGCAGCATCAGCAGCGCCAGCA
GCATCGGCAGCGCCATCATCAGCAGCATCCTTCGATTCAAAGTCAGGCAT
AAAACGTCCTGCGGAAAAAAACGCCACGACCGCCACTGCCGCTAAGCAAG
GGCGTTGCGATAACGTTTGCGAAGAGCTTCCAGTGGTGTGTTTGGCTTTG
CCCAATTTTGGCCCTGCCGAGGCAGTGAACGAGGCACTCTCGATTCTTTT
CGAGTGCGTAGGTCAATTTCTCAATGGCCCTGACACATCGTCAAAGAGCA
CTCCATCGTCGTCACCAGTCGTGCTTGAGATCATAGTGGTGGTGGAAGAA
GCAGCGGGTAGATACGCGGAGAAACTCCGAACACTGGCCGCAGCAATCCC
CATTCAAGCCATCGCGCAACGACGCGTTCGGTTACACTTGGGAAAGCTGG
CAGCGCTGAAGGAGACGGAGGGTGCTGTCTATGCACAAGCCATTGCTGTA
CCTTGCGATCGTCGCCTTTTACCATCTGATCACCCTGTGGCGAAAACTAT
GTTTCAAAAGGCGGGGCCTGTCCTTGCCAACACGGCCAAGCTTCTGTATC
ACAGAGCCGAGCCCGGCAAGGTGTACATCATCAAACTGACGCCGTCAAGT
CCCTTGCGCGCCCAGCGAGGAGTCGAATTTGTGCTCTTGGCGATGCCTCC
CTGTCAGGCATTGGCGACGAGCTTGCCCGAGAGGTGGCAAGATGCATTGC
GAAGAACTTATAACGAGTTGTTGAAAGCATTTGTGGAGCATGTAGTTCCC
AAGGCCGCGGTTCGGACTAAAAAGCAAAGTCTCGTGGATAAGGGAGATAC
TTCAGCCACAGTACTGTCGCCGCCAGTGGAGGTAGAAAAGAGCCAAGGTC
CTCCAACGCTCATTCCTGTCTACCGTCACCCGGGCCTGCCCCCGCAAAGT
GTCAGCTGGCACGGTGGCTTACATCAGTACCTTCAACATGCCACGGCGCT
TAAGACCTTCATCTTCCTCGAGTCACCGCAATGGATGTTCATCTACGACG
GGTACCCGAAAGCCAAGGTCCACCTCCTTTTGCTTTCCAAGCCGACATTT
ATGGCTGTAAGTGATGTAACGAAACTCCGGCGAGAGGAGCACGGGGAGAG
GTTAGCTCGGTTACATGTCGAAGCACGGCGCATCGCCACCAAGTTGGAGC
AAGACATGCCTGGTCTGTGCCTCCGACTGGGCTATCACAGTGTGCCTTCT
ATGCAACCCCTCCATCTGCACATTATCTCGCAGGAATTTGACTCTTCTTC
TCTCAAGACGAAAAAGCAATGGAACAGCTTCACAACCTCTTTTTTCTTGA
ATCCAGCAGAGGTGGAGACAGCCCTGCAAGAGCAAGGTCGAATATTCGTG
GACCGGGTCAATGCAGAAGCATTGTTGAAACACGGGTTACGCTGCCATGG
GTGTGGTGCAGGGCAGAAGAATATGCCTGCACTCAAGCAGCATTTGACAT
GTTGTCGGCAGGTTGCACAACTGGAAACAGGGAGCACATGAGTGTAATCG
AAATTTGATGGGGTAATCATTTACTTTGGTAAATAATATCAAGACATGTA
CAGGAAACAAACTCAAGCAGAACGTTCTGTTGCAAACCCTTTTCTCTT

protein sequence of jgi.p|Nanoce1779_2|611083

>mRNA_10338-protein ID=mRNA_10338-protein|Name=jgi.p|Nanoce1779_2|611083|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MFQKAGPVLANTAKLLYHRAEPGKVYIIKLTPSSPLRAQRGVEFVLLAMP
PCQALATSLPERWQDALRRTYNELLKAFVEHVVPKAAVRTKKQSLVDKGD
TSATVLSPPVEVEKSQGPPTLIPVYRHPGLPPQSVSWHGGLHQYLQHATA
LKTFIFLESPQWMFIYDGYPKAKVHLLLLSKPTFMAVSDVTKLRREEHGE
RLARLHVEARRIATKLEQDMPGLCLRLGYHSVPSMQPLHLHIISQEFDSS
SLKTKKQWNSFTTSFFLNPAEVETALQEQGRIFVDRVNAEALLKHGLRCH
GCGAGQKNMPALKQHLTCCRQVAQLETGST*

mRNA from alignment at scaffold_54:22627..24274+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10338 ID=mRNA_10338|Name=jgi.p|Nanoce1779_2|611083|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp|location=Sequence derived from alignment at scaffold_54:22627..24274+ (Nannochloropsis oceanica)
CAGCAGCACCAGCAGCATCAGCAGCGCCAGCAGCATCAGCAGCGCCAGCA
GCATCGGCAGCGCCATCATCAGCAGCATCCTTCGATTCAAAGTCAGGCAT
AAAACGTCCTGCGGAAAAAAACGCCACGACCGCCACTGCCGCTAAGCAAG
GGCGTTGCGATAACGTTTGCGAAGAGCTTCCAGTGGTGTGTTTGGCTTTG
CCCAATTTTGGCCCTGCCGAGGCAGTGAACGAGGCACTCTCGATTCTTTT
CGAGTGCGTAGGTCAATTTCTCAATGGCCCTGACACATCGTCAAAGAGCA
CTCCATCGTCGTCACCAGTCGTGCTTGAGATCATAGTGGTGGTGGAAGAA
GCAGCGGGTAGATACGCGGAGAAACTCCGAACACTGGCCGCAGCAATCCC
CATTCAAGCCATCGCGCAACGACGCGTTCGGTTACACTTGGGAAAGCTGG
CAGCGCTGAAGGAGACGGAGGGTGCTGTCTATGCACAAGCCATTGCTGTA
CCTTGCGATCGTCGCCTTTTACCATCTGATCACCCTGTGGCGAAAACTAT
GTTTCAAAAGGCGGGGCCTGTCCTTGCCAACACGGCCAAGCTTCTGTATC
ACAGAGCCGAGCCCGGCAAGGTGTACATCATCAAACTGACGCCGTCAAGT
CCCTTGCGCGCCCAGCGAGGAGTCGAATTTGTGCTCTTGGCGATGCCTCC
CTGTCAGGCATTGGCGACGAGCTTGCCCGAGAGGTGGCAAGATGCATTGC
GAAGAACTTATAACGAGTTGTTGAAAGCATTTGTGGAGCATGTAGTTCCC
AAGGCCGCGGTTCGGACTAAAAAGCAAAGTCTCGTGGATAAGGGAGATAC
TTCAGCCACAGTACTGTCGCCGCCAGTGGAGGTAGAAAAGAGCCAAGGTC
CTCCAACGCTCATTCCTGTCTACCGTCACCCGGGCCTGCCCCCGCAAAGT
GTCAGCTGGCACGGTGGCTTACATCAGTACCTTCAACATGCCACGGCGCT
TAAGACCTTCATCTTCCTCGAGTCACCGCAATGGATGTTCATCTACGACG
GGTACCCGAAAGCCAAGGTCCACCTCCTTTTGCTTTCCAAGCCGACATTT
ATGGCTGTAAGTGATGTAACGAAACTCCGGCGAGAGGAGCACGGGGAGAG
GTTAGCTCGGTTACATGTCGAAGCACGGCGCATCGCCACCAAGTTGGAGC
AAGACATGCCTGGTCTGTGCCTCCGACTGGGCTATCACAGTGTGCCTTCT
ATGCAACCCCTCCATCTGCACATTATCTCGCAGGAATTTGACTCTTCTTC
TCTCAAGACGAAAAAGCAATGGAACAGCTTCACAACCTCTTTTTTCTTGA
ATCCAGCAGAGGTGGAGACAGCCCTGCAAGAGCAAGGTCGAATATTCGTG
GACCGGGTCAATGCAGAAGCATTGTTGAAACACGGGTTACGCTGCCATGG
GTGTGGTGCAGGGCAGAAGAATATGCCTGCACTCAAGCAGCATTTGACAT
GTTGTCGGCAGGTTGCACAACTGGAAACAGGGAGCACATGAGTGTAATCG
AAATTTGATGGGGTAATCATTTACTTTGGTAAATAATATCAAGACATGTA
CAGGAAACAAACTCAAGCAGAACGTTCTGTTGCAAACCCTTTTCTCTT

Coding sequence (CDS) from alignment at scaffold_54:22627..24274+

>mRNA_10338 ID=mRNA_10338|Name=jgi.p|Nanoce1779_2|611083|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at scaffold_54:22627..24274+ (Nannochloropsis oceanica)
ATGTTTCAAAAGGCGGGGCCTGTCCTTGCCAACACGGCCAAGCTTCTGTA
TCACAGAGCCGAGCCCGGCAAGGTGTACATCATCAAACTGACGCCGTCAA
GTCCCTTGCGCGCCCAGCGAGGAGTCGAATTTGTGCTCTTGGCGATGCCT
CCCTGTCAGGCATTGGCGACGAGCTTGCCCGAGAGGTGGCAAGATGCATT
GCGAAGAACTTATAACGAGTTGTTGAAAGCATTTGTGGAGCATGTAGTTC
CCAAGGCCGCGGTTCGGACTAAAAAGCAAAGTCTCGTGGATAAGGGAGAT
ACTTCAGCCACAGTACTGTCGCCGCCAGTGGAGGTAGAAAAGAGCCAAGG
TCCTCCAACGCTCATTCCTGTCTACCGTCACCCGGGCCTGCCCCCGCAAA
GTGTCAGCTGGCACGGTGGCTTACATCAGTACCTTCAACATGCCACGGCG
CTTAAGACCTTCATCTTCCTCGAGTCACCGCAATGGATGTTCATCTACGA
CGGGTACCCGAAAGCCAAGGTCCACCTCCTTTTGCTTTCCAAGCCGACAT
TTATGGCTGTAAGTGATGTAACGAAACTCCGGCGAGAGGAGCACGGGGAG
AGGTTAGCTCGGTTACATGTCGAAGCACGGCGCATCGCCACCAAGTTGGA
GCAAGACATGCCTGGTCTGTGCCTCCGACTGGGCTATCACAGTGTGCCTT
CTATGCAACCCCTCCATCTGCACATTATCTCGCAGGAATTTGACTCTTCT
TCTCTCAAGACGAAAAAGCAATGGAACAGCTTCACAACCTCTTTTTTCTT
GAATCCAGCAGAGGTGGAGACAGCCCTGCAAGAGCAAGGTCGAATATTCG
TGGACCGGGTCAATGCAGAAGCATTGTTGAAACACGGGTTACGCTGCCAT
GGGTGTGGTGCAGGGCAGAAGAATATGCCTGCACTCAAGCAGCATTTGAC
ATGTTGTCGGCAGGTTGCACAACTGGAAACAGGGAGCACATGA

Synonyms

Publications