jgi.p|Nanoce1779_2|674676, mRNA_10237 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674676
Unique Name	mRNA_10237
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2710
Alignment location	scaffold_50:86932..89641 -

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Properties


Property Name	Value
TranscriptId	674762
Track	FilteredModels2
ProteinId	674676

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_50	supercontig	scaffold_50:86932..89641 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674676	gene_10237	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674676	mRNA_10237-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10237	CDS_10237	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_50:86932..89641-
coding sequence from alignment at scaffold_50:86932..89641-

mRNA sequence

>mRNA_10237 ID=mRNA_10237|Name=jgi.p|Nanoce1779_2|674676|organism=Nannochloropsis oceanica|type=mRNA|length=2710bp
CCTCCTCCTCCTCCTCCTCCTCCTTCCTCCCCGCCCTCCTCTCAAAGCTG
GCGTCGCCCAAGGCCAGTGTGCGTAAGCCAGTCCTCGTCATTCTGCGATT
GCTCTACGTACACGCTCATGACGAGAAGACCCAACATTATTTGATCGAAA
GACATAACTTAGTTTCCTTGATGCAGCGGCTGGTGGCGGATACGGAGCAT
ATCATCGTGAGAGATTTAGCCGGACAATTATTAAAGGAGTTTGAAAAGAG
GCAAATCAAGAGTTGATGAAAGAATGAAAGCATTGAGTTGAAATGTAATC
ATTTGCACGGTAACGTGTCAGAGACCTTCGGCGCCGACGCCCGCCACTTA
TATATAGAGGGCATACTCTACATAATTTGACTTGGCCAAGCGAGTAAATA
CACTTGGCGAACAAATACACGCATTTCCCGGCATGAAGCCGACTAAAGAG
TTCATAAAGCACTCCTAAGAAGGCAGAAGAGCCGAACGCAGGACTATTCT
ATCTAATATGCTGCAAGCTTTGATAGGCAAGTCGTACTACACATGCGAGG
CGTAGGGTGGTCCTTGTCCAGACCTCAGGACAAAAGCGACTACCGCAATA
TAAGCAGCATACCTGATCACCATACGCATTCTACAGTTTCAAACTTAGTC
TTTTCTTGTCCTTTTGATTTCTGTCTGTATGAAACAATTTGCTGCTGCGT
TGTAGGACAGGGCAATAAATACGTTCCGGCTCAGCAAGTGTCACCCATCG
CCACCCTATATATCTTCATGTTCCAATATACCGCGCAAGTAGCCGCCTTC
TCAACAGATTGAGTCTTTACTTACCAGCTGGTCGCATCCGACGCACTGTG
GCCGCACGCAAAAGCCAACCACGAAAGTAGACTTCTGATGCCCTCCGTCT
ACTGCGTCGCAGCGAGCACTGTCGAGACTTTTCTAACACGAGCGCTCTCG
CCATCCAAAACTCCAGCAACAGCTAAAGCAATAAGATCAATATCAGCACC
AACAATGCATACCGTACAACCGTATCTCCAAAGTGTGGGAGCCATGCGTG
GAGTAGCAACATCATCATCACTATTTTCACCAGCAGCATCAGAAGCGGCA
GCGCCACCACCACTACCACGGCCACCACCCGAAACATCACACTATCACAT
CTTAGGTGCTGGTGCTATGGGTTGCTTGGTCGGTGCCGCCCTCGCACACA
AGGCAGGAGTCCGCGTCTCCCTATTGACCCGGCATCGGCCTCTTTTCCCC
ACGGCCACGATCCATGTCCGGGAAACCTACGTCCGTGCTGCTGCCCCTCC
TTCTTTCCGCCATACCTCTCCGCCTACTTCCACATCTCCTTCATCTTTAT
CCTCTCCTCCTTCTTCACCATCGTCCTCATCTTTGTCATTCTCCACCACC
TACGCACCTCACGTTTTCCTTGAAGAAAACAGCAGCAGCTATAGCAACAC
TACCAGCAAAATCTCCCACCTTCTCGTCCTCACCAAGGCATATGACATTA
AAAATGCGCTTAAAAGCATCGCCCCTCGCTTAAGGAAAGATACAGTGGTC
CTTCTTCTTTCCAATGGTATGGGTTATTTGGAAGAAGCACGGGCAGCTCT
TGGGGGAGGAAGGAAGGGCGGCAGCAGCAGCGGCAGCAGCAGCATAGGAG
GGAAGGAAATCAAGAGCGAGGATCAAGAGGATGGGCCAATGTGTGTTGTA
GGCACAATAACGCATGGGGGCTTGAAAGCGGAAGGGGCATGGGAGGGAGG
GGGGGAGGAGGAGGTGGTGGCAACGCGCAGCAGCAGCAGTAGCAGCAGCT
GTAGTGACGAATCGGTTCACTTCTATGTGGAACACACCGGTTTAGGCCAA
ATCCATCTCGGCATGCCCCTCTTTCCTTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCGCCTCCGCCTCCTCTACCCCCTCCCCAGCACCATCACCAC
CACCTCTCCTCTCCTCCCTCCTCTCCCACCTGGCCCTCGCCGAGCTTTTC
CCCGTGTGGGAATCCCCGGAAAATATGAGGAAAATGTTGTGGAAAAAGCT
GGGGGTGAACGTTGTCATCAACCCTCTTACTGCCCTCCTAGGCTGTAGAA
ATGGAGAGATCCTGGATTACTGCGCGCGCGCCCTCCCTCCCTCACTCCCT
CCCTCCCTCTTTTCTTCCTCCTCCTCCTCGGATGGAGTGAATTTGGAGGA
GTTGGTGCGCGAGTTGTGTAAAGAGACAGCCGCGGTAGCAGCAGCGGTGG
AACAGGAAGAGTTCGGCACATCATTTCCTTCTTCCTCCAGCCCTTCCTCC
CTTCCGCCCTCCTTCCCTCCCTCGTCCTCCATGCCCACGGCGGAGGAACT
CGAAAAATTCACTCTTCAGGTGGCCAAAGCCACAGCCGGGAATCAGTCAA
GCATGCATCGAGACTTGGCGTGGGAGGGGGGGAGGGAGGGAGGGAGGGGA
AGGAGGGAAAGGAAGACAGAGATTGAGTATTTGAATGGGTTCATCGTGAG
GGAGGGAAGGAGGCTGGGGGTGCCGGTGCCGAGGCATGAGGTGTTGACGG
CGTCAGTGAGGCGGCGAGAAGAGGAGGGAGTGAGGGAGGGAGGAGGAAAG
AGAGGGAGGACACGAACAGTGGTGGAAGGAGAGAAGGCCGACAAGGATGA
ACAGGGATAATGTCAGGCCTGGCCTTTGTCTTCCCTCCCCTTCGTTGTCC
TTTATTCCCC

protein sequence of jgi.p|Nanoce1779_2|674676

>mRNA_10237-protein ID=mRNA_10237-protein|Name=jgi.p|Nanoce1779_2|674676|organism=Nannochloropsis oceanica|type=polypeptide|length=591bp
MPSVYCVAASTVETFLTRALSPSKTPATAKAIRSISAPTMHTVQPYLQSV
GAMRGVATSSSLFSPAASEAAAPPPLPRPPPETSHYHILGAGAMGCLVGA
ALAHKAGVRVSLLTRHRPLFPTATIHVRETYVRAAAPPSFRHTSPPTSTS
PSSLSSPPSSPSSSSLSFSTTYAPHVFLEENSSSYSNTTSKISHLLVLTK
AYDIKNALKSIAPRLRKDTVVLLLSNGMGYLEEARAALGGGRKGGSSSGS
SSIGGKEIKSEDQEDGPMCVVGTITHGGLKAEGAWEGGGEEEVVATRSSS
SSSSCSDESVHFYVEHTGLGQIHLGMPLFPSSSSSSSSSSSASASSTPSP
APSPPPLLSSLLSHLALAELFPVWESPENMRKMLWKKLGVNVVINPLTAL
LGCRNGEILDYCARALPPSLPPSLFSSSSSSDGVNLEELVRELCKETAAV
AAAVEQEEFGTSFPSSSSPSSLPPSFPPSSSMPTAEELEKFTLQVAKATA
GNQSSMHRDLAWEGGREGGRGRRERKTEIEYLNGFIVREGRRLGVPVPRH
EVLTASVRRREEEGVREGGGKRGRTRTVVEGEKADKDEQG*

mRNA from alignment at scaffold_50:86932..89641-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10237 ID=mRNA_10237|Name=jgi.p|Nanoce1779_2|674676|organism=Nannochloropsis oceanica|type=mRNA|length=2710bp|location=Sequence derived from alignment at scaffold_50:86932..89641- (Nannochloropsis oceanica)
CCTCCTCCTCCTCCTCCTCCTCCTTCCTCCCCGCCCTCCTCTCAAAGCTG
GCGTCGCCCAAGGCCAGTGTGCGTAAGCCAGTCCTCGTCATTCTGCGATT
GCTCTACGTACACGCTCATGACGAGAAGACCCAACATTATTTGATCGAAA
GACATAACTTAGTTTCCTTGATGCAGCGGCTGGTGGCGGATACGGAGCAT
ATCATCGTGAGAGATTTAGCCGGACAATTATTAAAGGAGTTTGAAAAGAG
GCAAATCAAGAGTTGATGAAAGAATGAAAGCATTGAGTTGAAATGTAATC
ATTTGCACGGTAACGTGTCAGAGACCTTCGGCGCCGACGCCCGCCACTTA
TATATAGAGGGCATACTCTACATAATTTGACTTGGCCAAGCGAGTAAATA
CACTTGGCGAACAAATACACGCATTTCCCGGCATGAAGCCGACTAAAGAG
TTCATAAAGCACTCCTAAGAAGGCAGAAGAGCCGAACGCAGGACTATTCT
ATCTAATATGCTGCAAGCTTTGATAGGCAAGTCGTACTACACATGCGAGG
CGTAGGGTGGTCCTTGTCCAGACCTCAGGACAAAAGCGACTACCGCAATA
TAAGCAGCATACCTGATCACCATACGCATTCTACAGTTTCAAACTTAGTC
TTTTCTTGTCCTTTTGATTTCTGTCTGTATGAAACAATTTGCTGCTGCGT
TGTAGGACAGGGCAATAAATACGTTCCGGCTCAGCAAGTGTCACCCATCG
CCACCCTATATATCTTCATGTTCCAATATACCGCGCAAGTAGCCGCCTTC
TCAACAGATTGAGTCTTTACTTACCAGCTGGTCGCATCCGACGCACTGTG
GCCGCACGCAAAAGCCAACCACGAAAGTAGACTTCTGATGCCCTCCGTCT
ACTGCGTCGCAGCGAGCACTGTCGAGACTTTTCTAACACGAGCGCTCTCG
CCATCCAAAACTCCAGCAACAGCTAAAGCAATAAGATCAATATCAGCACC
AACAATGCATACCGTACAACCGTATCTCCAAAGTGTGGGAGCCATGCGTG
GAGTAGCAACATCATCATCACTATTTTCACCAGCAGCATCAGAAGCGGCA
GCGCCACCACCACTACCACGGCCACCACCCGAAACATCACACTATCACAT
CTTAGGTGCTGGTGCTATGGGTTGCTTGGTCGGTGCCGCCCTCGCACACA
AGGCAGGAGTCCGCGTCTCCCTATTGACCCGGCATCGGCCTCTTTTCCCC
ACGGCCACGATCCATGTCCGGGAAACCTACGTCCGTGCTGCTGCCCCTCC
TTCTTTCCGCCATACCTCTCCGCCTACTTCCACATCTCCTTCATCTTTAT
CCTCTCCTCCTTCTTCACCATCGTCCTCATCTTTGTCATTCTCCACCACC
TACGCACCTCACGTTTTCCTTGAAGAAAACAGCAGCAGCTATAGCAACAC
TACCAGCAAAATCTCCCACCTTCTCGTCCTCACCAAGGCATATGACATTA
AAAATGCGCTTAAAAGCATCGCCCCTCGCTTAAGGAAAGATACAGTGGTC
CTTCTTCTTTCCAATGGTATGGGTTATTTGGAAGAAGCACGGGCAGCTCT
TGGGGGAGGAAGGAAGGGCGGCAGCAGCAGCGGCAGCAGCAGCATAGGAG
GGAAGGAAATCAAGAGCGAGGATCAAGAGGATGGGCCAATGTGTGTTGTA
GGCACAATAACGCATGGGGGCTTGAAAGCGGAAGGGGCATGGGAGGGAGG
GGGGGAGGAGGAGGTGGTGGCAACGCGCAGCAGCAGCAGTAGCAGCAGCT
GTAGTGACGAATCGGTTCACTTCTATGTGGAACACACCGGTTTAGGCCAA
ATCCATCTCGGCATGCCCCTCTTTCCTTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCGCCTCCGCCTCCTCTACCCCCTCCCCAGCACCATCACCAC
CACCTCTCCTCTCCTCCCTCCTCTCCCACCTGGCCCTCGCCGAGCTTTTC
CCCGTGTGGGAATCCCCGGAAAATATGAGGAAAATGTTGTGGAAAAAGCT
GGGGGTGAACGTTGTCATCAACCCTCTTACTGCCCTCCTAGGCTGTAGAA
ATGGAGAGATCCTGGATTACTGCGCGCGCGCCCTCCCTCCCTCACTCCCT
CCCTCCCTCTTTTCTTCCTCCTCCTCCTCGGATGGAGTGAATTTGGAGGA
GTTGGTGCGCGAGTTGTGTAAAGAGACAGCCGCGGTAGCAGCAGCGGTGG
AACAGGAAGAGTTCGGCACATCATTTCCTTCTTCCTCCAGCCCTTCCTCC
CTTCCGCCCTCCTTCCCTCCCTCGTCCTCCATGCCCACGGCGGAGGAACT
CGAAAAATTCACTCTTCAGGTGGCCAAAGCCACAGCCGGGAATCAGTCAA
GCATGCATCGAGACTTGGCGTGGGAGGGGGGGAGGGAGGGAGGGAGGGGA
AGGAGGGAAAGGAAGACAGAGATTGAGTATTTGAATGGGTTCATCGTGAG
GGAGGGAAGGAGGCTGGGGGTGCCGGTGCCGAGGCATGAGGTGTTGACGG
CGTCAGTGAGGCGGCGAGAAGAGGAGGGAGTGAGGGAGGGAGGAGGAAAG
AGAGGGAGGACACGAACAGTGGTGGAAGGAGAGAAGGCCGACAAGGATGA
ACAGGGATAATGTCAGGCCTGGCCTTTGTCTTCCCTCCCCTTCGTTGTCC
TTTATTCCCC

Coding sequence (CDS) from alignment at scaffold_50:86932..89641-

>mRNA_10237 ID=mRNA_10237|Name=jgi.p|Nanoce1779_2|674676|organism=Nannochloropsis oceanica|type=CDS|length=1773bp|location=Sequence derived from alignment at scaffold_50:86932..89641- (Nannochloropsis oceanica)
ATGCCCTCCGTCTACTGCGTCGCAGCGAGCACTGTCGAGACTTTTCTAAC
ACGAGCGCTCTCGCCATCCAAAACTCCAGCAACAGCTAAAGCAATAAGAT
CAATATCAGCACCAACAATGCATACCGTACAACCGTATCTCCAAAGTGTG
GGAGCCATGCGTGGAGTAGCAACATCATCATCACTATTTTCACCAGCAGC
ATCAGAAGCGGCAGCGCCACCACCACTACCACGGCCACCACCCGAAACAT
CACACTATCACATCTTAGGTGCTGGTGCTATGGGTTGCTTGGTCGGTGCC
GCCCTCGCACACAAGGCAGGAGTCCGCGTCTCCCTATTGACCCGGCATCG
GCCTCTTTTCCCCACGGCCACGATCCATGTCCGGGAAACCTACGTCCGTG
CTGCTGCCCCTCCTTCTTTCCGCCATACCTCTCCGCCTACTTCCACATCT
CCTTCATCTTTATCCTCTCCTCCTTCTTCACCATCGTCCTCATCTTTGTC
ATTCTCCACCACCTACGCACCTCACGTTTTCCTTGAAGAAAACAGCAGCA
GCTATAGCAACACTACCAGCAAAATCTCCCACCTTCTCGTCCTCACCAAG
GCATATGACATTAAAAATGCGCTTAAAAGCATCGCCCCTCGCTTAAGGAA
AGATACAGTGGTCCTTCTTCTTTCCAATGGTATGGGTTATTTGGAAGAAG
CACGGGCAGCTCTTGGGGGAGGAAGGAAGGGCGGCAGCAGCAGCGGCAGC
AGCAGCATAGGAGGGAAGGAAATCAAGAGCGAGGATCAAGAGGATGGGCC
AATGTGTGTTGTAGGCACAATAACGCATGGGGGCTTGAAAGCGGAAGGGG
CATGGGAGGGAGGGGGGGAGGAGGAGGTGGTGGCAACGCGCAGCAGCAGC
AGTAGCAGCAGCTGTAGTGACGAATCGGTTCACTTCTATGTGGAACACAC
CGGTTTAGGCCAAATCCATCTCGGCATGCCCCTCTTTCCTTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCGCCTCCGCCTCCTCTACCCCCTCCCCA
GCACCATCACCACCACCTCTCCTCTCCTCCCTCCTCTCCCACCTGGCCCT
CGCCGAGCTTTTCCCCGTGTGGGAATCCCCGGAAAATATGAGGAAAATGT
TGTGGAAAAAGCTGGGGGTGAACGTTGTCATCAACCCTCTTACTGCCCTC
CTAGGCTGTAGAAATGGAGAGATCCTGGATTACTGCGCGCGCGCCCTCCC
TCCCTCACTCCCTCCCTCCCTCTTTTCTTCCTCCTCCTCCTCGGATGGAG
TGAATTTGGAGGAGTTGGTGCGCGAGTTGTGTAAAGAGACAGCCGCGGTA
GCAGCAGCGGTGGAACAGGAAGAGTTCGGCACATCATTTCCTTCTTCCTC
CAGCCCTTCCTCCCTTCCGCCCTCCTTCCCTCCCTCGTCCTCCATGCCCA
CGGCGGAGGAACTCGAAAAATTCACTCTTCAGGTGGCCAAAGCCACAGCC
GGGAATCAGTCAAGCATGCATCGAGACTTGGCGTGGGAGGGGGGGAGGGA
GGGAGGGAGGGGAAGGAGGGAAAGGAAGACAGAGATTGAGTATTTGAATG
GGTTCATCGTGAGGGAGGGAAGGAGGCTGGGGGTGCCGGTGCCGAGGCAT
GAGGTGTTGACGGCGTCAGTGAGGCGGCGAGAAGAGGAGGGAGTGAGGGA
GGGAGGAGGAAAGAGAGGGAGGACACGAACAGTGGTGGAAGGAGAGAAGG
CCGACAAGGATGAACAGGGATAA

Synonyms

Publications