jgi.p|Nanoce1779_2|262299, gene_9807 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|262299
Unique Name	gene_9807
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_32:148152..149417 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	262385
ProteinId	262299
Product name	Chlorophyll a/b binding protein domain-containing protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:148152..149417 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL050	ncniL050	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G00330	NO18G00330	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|262299	mRNA_9807-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|262299	mRNA_9807	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|262299

>mRNA_9807-protein ID=mRNA_9807-protein|Name=jgi.p|Nanoce1779_2|262299|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MLAVVGVLLQEVFAPFYNPETGSTDPGPAIFHFQELEALNPVLFVFLILG
IAVVESFTISKGWESPDEMRAGGNTIAGLRDTYISGDLEFDPLGLAPTSD
ANAFINRRSKELNNGRLAMLAWAGMVVQELVTNSKIFS*

Synonyms

Publications