jgi.p|Nanoce1779_2|262299, mRNA_9807 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|262299
Unique NamemRNA_9807
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length761
Alignment locationscaffold_32:148152..149417 -

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Properties
Property NameValue
TranscriptId262385
TrackFilteredModels2
ProteinId262299
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:148152..149417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|262299gene_9807Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|262299mRNA_9807-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9807CDS_9807Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9807 ID=mRNA_9807|Name=jgi.p|Nanoce1779_2|262299|organism=Nannochloropsis oceanica|type=mRNA|length=761bp
CCCGCCCTCCCTCCCTCTTTCCCTCCCACAGCACGGGCAAGACCTTCAAG
GAGCTCAAGAAATGGCGCGAATCCGAGGTAAAGCACGGCCGTGTGGCCAT
GCTTGCCGTGGTGGGCGTGCTTCTCCAAGAAGTGTTCGCTCCCTTCTATA
ACCCCGAGACTGGCTCCACCGACCCCGGGCCAGCCATCTTTCACTTCCAG
GAGCTGGAGGCCCTCAATCCCGTCCTCTTCGTCTTCCTCATCCTCGGCAT
CGCCGTCGTCGAGTCTTTTACCATTTCGAAGGGGTGGGAGTCGCCCGATG
AGATGCGCGCCGGTGGGAACACCATCGCCGGTCTCCGTGACACGTACATC
TCCGGTGACCTCGAGTTCGACCCTCTCGGCCTGGCCCCCACCTCGGACGC
GAACGCCTTCATCAACAGGCGCTCCAAGGAATTGAACAATGGTCGCTTGG
CCATGCTTGCCTGGGCGGGGATGGTGGTTCAGGAGCTCGTGACCAACTCC
AAGATCTTCTCCTAAGCAGTGCGAATAGCGCTTGGGAGGGATGGAGGGAG
CGGGTTGGACCGCATGTGGGTGCTAAAACATGAATCTGGAGTGGGGAATT
GGTAGGTTTTTGGCACGGTTGTATGGCAAGCAGGCACGGACAGACAGAGA
GAGATGGAGAGAGAGAATGGAAGTCGCTCCACGTGCTACCGTAGGGCATG
GATGTGTGTGCGGGGAGTCGACTTGTTGGTGTGTGACATTTGTCGTATAT
GTGCGTCATTT
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protein sequence of jgi.p|Nanoce1779_2|262299

>mRNA_9807-protein ID=mRNA_9807-protein|Name=jgi.p|Nanoce1779_2|262299|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MLAVVGVLLQEVFAPFYNPETGSTDPGPAIFHFQELEALNPVLFVFLILG
IAVVESFTISKGWESPDEMRAGGNTIAGLRDTYISGDLEFDPLGLAPTSD
ANAFINRRSKELNNGRLAMLAWAGMVVQELVTNSKIFS*
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mRNA from alignment at scaffold_32:148152..149417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9807 ID=mRNA_9807|Name=jgi.p|Nanoce1779_2|262299|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp|location=Sequence derived from alignment at scaffold_32:148152..149417- (Nannochloropsis oceanica)
CCCGCCCTCCCTCCCTCTTTCCCTCCCACAGCACGGGCAAGACCTTCAAG
GAGCTCAAGAAATGGCGCGAATCCGAGGTAAAGCACGGCCGTGTGGCCAT
GCTTGCCGTGGTGGGCGTGCTTCTCCAAGAAGTGTTCGCTCCCTTCTATA
ACCCCGAGACTGGCTCCACCGACCCCGGGCCAGCCATCTTTCACTTCCAG
GTACCCTCCTCCCCTCCCCTCTTTCCCTCCCACTCTTTTCTCCCCCCCCT
CCCTCCCTCCCCCTACTTGCATTAGTTATTCATAGTCATACTCTCACCCG
CTCCCCGTTTCCCTCCTCCCTTCCTCCCTCCCTGCCTCACAGGAGCTGGA
GGCCCTCAATCCCGTCCTCTTCGTCTTCCTCATCCTCGGCATCGCCGTCG
TCGAGTCTTTTACCATTTCGAAGGGGTGGGAGTCGCCCGATGAGATGCGC
GCCGGTACGTCTCGCTTGCCTTATTTTTCCTGTCCTCCCGTCCTGGTATT
CCCTTCCACCACACCACCGTCCATAGTGCTTTCTTCTCGACACCAAGCCT
CATGGACATACCCTCCCCTCCCTCTCTCCCTCCCCCCTTCAGGTGGGAAC
ACCATCGCCGGTCTCCGTGACACGTACATCTCCGGTGACCTCGAGTTCGA
CCCTCTCGGTACGTACGCGGGTTGTGGACTGAGAAACAGCAAGGCGAAGA
ATTATCACGTGGAGCTTAGGGAAGATGAAGTTGCACATCCACACGAAGGA
TGGTCCAACCCTAGCCTGTGTGCCTCGTGTCTATCCCCAGCAGCCACTTC
GTCCTCTTTCTCTCCTCGATTCGTCTTGTTCGTCTCACGTCCTCCCCTTC
CCTCTCTCTTCCCTCCCCCGCGTCATAACGCAGGCCTGGCCCCCACCTCG
GACGCGAACGCCTTCATCAACAGGCGCTCCAAGGAATTGAACAATGGTCG
CTTGGCCATGCTTGCCTGGGCGGGGATGGTGGTTCAGGAGCTCGTGACCA
ACTCCAAGATCTTCTCCTAAGCAGTGCGAATAGCGCTTGGGAGGGATGGA
GGGAGCGGGTTGGACCGCATGTGGGTGCTAAAACATGAATCTGGAGTGGG
GAATTGGTAGGTTTTTGGCACGGTTGTATGGCAAGCAGGCACGGACAGAC
AGAGAGAGATGGAGAGAGAGAATGGAAGTCGCTCCACGTGCTACCGTAGG
GCATGGATGTGTGTGCGGGGAGTCGACTTGTTGGTGTGTGACATTTGTCG
TATATGTGCGTCATTT
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Coding sequence (CDS) from alignment at scaffold_32:148152..149417-

>mRNA_9807 ID=mRNA_9807|Name=jgi.p|Nanoce1779_2|262299|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at scaffold_32:148152..149417- (Nannochloropsis oceanica)
GCCTGGCCCCCACCTCGGACGCGAACGCCTTCATCAACAGGCGCTCCAAG
GAATTGAACAATGGTCGCTTGGCCATGCTTGCCTGGGCGGGGATGGTGGT
TCAGGAGCTCGTGACCAACTCCAAGATCTTCTCCTAAGTGGGAACACCAT
CGCCGGTCTCCGTGACACGTACATCTCCGGTGACCTCGAGTTCGACCCTC
TCGGAGCTGGAGGCCCTCAATCCCGTCCTCTTCGTCTTCCTCATCCTCGG
CATCGCCGTCGTCGAGTCTTTTACCATTTCGAAGGGGTGGGAGTCGCCCG
ATGAGATGCGCGCCGATGCTTGCCGTGGTGGGCGTGCTTCTCCAAGAAGT
GTTCGCTCCCTTCTATAACCCCGAGACTGGCTCCACCGACCCCGGGCCAG
CCATCTTTCACTTCCAGGCCTGGCCCCCACCTCGGACGCGAACGCCTTCA
TCAACAGGCGCTCCAAGGAATTGAACAATGGTCGCTTGGCCATGCTTGCC
TGGGCGGGGATGGTGGTTCAGGAGCTCGTGACCAACTCCAAGATCTTCTC
CTAAGTGGGAACACCATCGCCGGTCTCCGTGACACGTACATCTCCGGTGA
CCTCGAGTTCGACCCTCTCGGAGCTGGAGGCCCTCAATCCCGTCCTCTTC
GTCTTCCTCATCCTCGGCATCGCCGTCGTCGAGTCTTTTACCATTTCGAA
GGGGTGGGAGTCGCCCGATGAGATGCGCGCCGATGCTTGCCGTGGTGGGC
GTGCTTCTCCAAGAAGTGTTCGCTCCCTTCTATAACCCCGAGACTGGCTC
CACCGACCCCGGGCCAGCCATCTTTCACTTCCAGGCCTGGCCCCCACCTC
GGACGCGAACGCCTTCATCAACAGGCGCTCCAAGGAATTGAACAATGGTC
GCTTGGCCATGCTTGCCTGGGCGGGGATGGTGGTTCAGGAGCTCGTGACC
AACTCCAAGATCTTCTCCTAAGTGGGAACACCATCGCCGGTCTCCGTGAC
ACGTACATCTCCGGTGACCTCGAGTTCGACCCTCTCGGAGCTGGAGGCCC
TCAATCCCGTCCTCTTCGTCTTCCTCATCCTCGGCATCGCCGTCGTCGAG
TCTTTTACCATTTCGAAGGGGTGGGAGTCGCCCGATGAGATGCGCGCCGA
TGCTTGCCGTGGTGGGCGTGCTTCTCCAAGAAGTGTTCGCTCCCTTCTAT
AACCCCGAGACTGGCTCCACCGACCCCGGGCCAGCCATCTTTCACTTCCA
GGCCTGGCCCCCACCTCGGACGCGAACGCCTTCATCAACAGGCGCTCCAA
GGAATTGAACAATGGTCGCTTGGCCATGCTTGCCTGGGCGGGGATGGTGG
TTCAGGAGCTCGTGACCAACTCCAAGATCTTCTCCTAAGTGGGAACACCA
TCGCCGGTCTCCGTGACACGTACATCTCCGGTGACCTCGAGTTCGACCCT
CTCGGAGCTGGAGGCCCTCAATCCCGTCCTCTTCGTCTTCCTCATCCTCG
GCATCGCCGTCGTCGAGTCTTTTACCATTTCGAAGGGGTGGGAGTCGCCC
GATGAGATGCGCGCCGATGCTTGCCGTGGTGGGCGTGCTTCTCCAAGAAG
TGTTCGCTCCCTTCTATAACCCCGAGACTGGCTCCACCGACCCCGGGCCA
GCCATCTTTCACTTCCAG
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Synonyms
Publications