NO18G00330, NO18G00330 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G00330 vs. NCBI_GenBank
Match: XP_005855703.1 (light harvesting complex protein [Nannochloropsis gaditana CCMP526] >EKU20655.1 light harvesting complex protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 345.9 bits (886), Expect = 1.600e-91 Identity = 164/178 (92.13%), Postives = 176/178 (98.88%), Query Frame = 0 Query: 194 MEAGATAPFGFFDPLGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSTDPGPAIFHFQELEALNPVLFVFLILGIAVVESFTISKGWESPDEMRAGGNTIAGLRDTYISGDLEFDPLGLAPTSDANAFINRRSKELNNGRLAMLAWAGMVVQELVTNSKIFS 372 MEAGATAPFGFFDP+GLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGS+DPGPAIFHFQELEALNP LFVFLILGIA+VESFTISKGWESP+EMRAGGNTIAGLRDTY++GDLEFDPLGLAPT+D +AFIN+RSKELNNGRLAM+AWAGMVVQEL++NSKIFS Sbjct: 1 MEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGGNTIAGLRDTYVAGDLEFDPLGLAPTADVDAFINQRSKELNNGRLAMIAWAGMVVQELISNSKIFS 178
BLAST of NO18G00330 vs. NCBI_GenBank
Match: EWM23234.1 (beta-ig-h3 fasciclin [Nannochloropsis gaditana]) HSP 1 Score: 263.8 bits (673), Expect = 7.800e-67 Identity = 141/185 (76.22%), Postives = 165/185 (89.19%), Query Frame = 0 Query: 1 MRAFATILACTATASAFMLPTPTSRPSTARFAASSVGTKDIVDTAVDAGSFKTLATALTAAGLIDTLKGPGPFTVFAPTDEAFGKIDPAALNALLEDKAKLTSILTYHVVSGRVPASDVVKLSSAMTVQGSTVEIAVSSSGVKLNNANVVATDVQASNGIIHVIDTVLLPGSVGAPASGAKPVDK 186 MR ++LAC ATASAF+LPTPT+RP++A F AS+VG KDIVDTAVDAGSFKTLATALTAAGL++TLKGPGPFTVFAPTDEAF K++ A LNALL DK KLTSILTYHVVSGRVPA+DV+KL+SA TVQG V +AVSS+GVK+NNANVVATDV+ASNGIIH+ID+VL+PG+V APA+ +K V K Sbjct: 1 MRVLVSLLACAATASAFLLPTPTTRPASALF-ASTVGAKDIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIPGAVAAPAAASKEVGK 184
BLAST of NO18G00330 vs. NCBI_GenBank
Match: EWM23233.1 (light harvesting complex protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 248.1 bits (632), Expect = 4.400e-62 Identity = 119/126 (94.44%), Postives = 124/126 (98.41%), Query Frame = 0 Query: 183 VDKKSLAYREVMEAGATAPFGFFDPLGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSTDPGPAIFHFQELEALNPVLFVFLILGIAVVESFTISKGWESPDEMRAGGNT 309 VDKKSLAYREVMEAGATAPFGFFDP+GLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGS+DPGPAIFHFQELEALNP LFVFLILGIA+VESFTISKGWESP+EMRAG +T Sbjct: 3 VDKKSLAYREVMEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGEST 128
BLAST of NO18G00330 vs. NCBI_GenBank
Match: WP_063719059.1 (fasciclin domain-containing protein [Leptolyngbya valderiana] >OAB56475.1 hypothetical protein AY599_22195 [Leptolyngbya valderiana BDU 20041]) HSP 1 Score: 172.9 bits (437), Expect = 1.800e-39 Identity = 91/132 (68.94%), Postives = 111/132 (84.09%), Query Frame = 0 Query: 39 KDIVDTAVDAGSFKTLATALTAAGLIDTLKGPGPFTVFAPTDEAFGKIDPAALNALLEDKAKLTSILTYHVVSGRVPASDVVKLSSAMTVQGSTVEIAVSSSGVKLNNANVVATDVQASNGIIHVIDTVLLP 171 K+IV+TAV+AG+F TLATALT AGLI+TL G GPFTVFAPTDEAF KI A L A+L DK LTSILTYHVV+G+V +SDVV LSSA TVQGS ++I V+ GV++++ANVVA D++ASNG+IHVIDTV+ P Sbjct: 33 KNIVETAVEAGNFTTLATALTEAGLIETLSGEGPFTVFAPTDEAFAKIPAADLEAILADKELLTSILTYHVVAGKVMSSDVVNLSSATTVQGSDIDITVTEGGVQVDDANVVAVDIEASNGVIHVIDTVITP 164
BLAST of NO18G00330 vs. NCBI_GenBank
Match: WP_095416381.1 (fasciclin domain-containing protein [Thermogutta terrifontis] >ASV76640.1 Sensory subunit of low CO2-induced protein complex, putative [Thermogutta terrifontis]) HSP 1 Score: 172.6 bits (436), Expect = 2.400e-39 Identity = 91/138 (65.94%), Postives = 107/138 (77.54%), Query Frame = 0 Query: 33 ASSVGTKDIVDTAVDAGSFKTLATALTAAGLIDTLKGPGPFTVFAPTDEAFGKIDPAALNALLEDKAKLTSILTYHVVSGRVPASDVVKLSSAMTVQGSTVEIAVSSSGVKLNNANVVATDVQASNGIIHVIDTVLLP 171 A KDIVD AV+AGSFKTLA AL AAGL++TLKG GPFTVFAPTDEAF K+ L ALL+DKAKLT++LTYHVV+G PA VV S TVQGS ++I V+ +GVK+N A VV TD++ASNGIIHVID V+LP Sbjct: 26 ADEAAKKDIVDVAVEAGSFKTLAKALQAAGLVETLKGKGPFTVFAPTDEAFAKLPEGTLEALLKDKAKLTAVLTYHVVAGEYPAEKVVASKSLKTVQGSPIKITVTDAGVKVNQAKVVKTDIRASNGIIHVIDAVILP 163
BLAST of NO18G00330 vs. NCBI_GenBank
Match: WP_096601254.1 (fasciclin domain-containing protein [Calothrix sp. NIES-2100] >BAY23501.1 beta-Ig-H3/fasciclin [Calothrix sp. NIES-2100]) HSP 1 Score: 171.8 bits (434), Expect = 4.000e-39 Identity = 89/132 (67.42%), Postives = 109/132 (82.58%), Query Frame = 0 Query: 40 DIVDTAVDAGSFKTLATALTAAGLIDTLKGPGPFTVFAPTDEAFGKIDPAALNALLEDKAKLTSILTYHVVSGRVPASDVVKLSSAMTVQGSTVEIAVSSSGVKLNNANVVATDVQASNGIIHVIDTVLLPG 172 DIVDTAV+AGSF TL A+ AAGL+DTLKG GPFTVFAPTDEAF K+ +++LL+D +LT ILTYHVVSG+V A+DVV L SA TV+GS+V+I S+ GVK+N+ANVV DV+A NG+IHVIDTVL+PG Sbjct: 3 DIVDTAVNAGSFNTLVAAVQAAGLVDTLKGQGPFTVFAPTDEAFSKLPAGTVDSLLQDIPQLTKILTYHVVSGKVLAADVVNLDSAPTVEGSSVQIDASNGGVKINDANVVTPDVEADNGVIHVIDTVLIPG 134
BLAST of NO18G00330 vs. NCBI_GenBank
Match: WP_092405374.1 (fasciclin domain-containing protein [Dokdonella immobilis] >SFN10012.1 Uncaracterized surface protein containing fasciclin (FAS1) repeats [Dokdonella immobilis]) HSP 1 Score: 171.4 bits (433), Expect = 5.300e-39 Identity = 92/132 (69.70%), Postives = 104/132 (78.79%), Query Frame = 0 Query: 39 KDIVDTAVDAGSFKTLATALTAAGLIDTLKGPGPFTVFAPTDEAFGKIDPAALNALLEDKAKLTSILTYHVVSGRVPASDVVKLSSAMTVQGSTVEIAVSSSGVKLNNANVVATDVQASNGIIHVIDTVLLP 171 KDIVDTAV AGSFKTLATAL AAGL+DTLKGPGPFTVFAPTD AF K+ + LL+DK KLT+ILTYHVV+G V A+DVVKL SA TV G +V I V V ++NA V DV+ASNG+IHVIDTVLLP Sbjct: 31 KDIVDTAVAAGSFKTLATALEAAGLVDTLKGPGPFTVFAPTDAAFAKLPAGTVEGLLKDKPKLTAILTYHVVAGNVKAADVVKLDSAKTVNGQSVAIKVVDGKVMVDNATVTTADVEASNGVIHVIDTVLLP 162
BLAST of NO18G00330 vs. NCBI_GenBank
Match: WP_052185282.1 (fasciclin domain-containing protein [Pseudomonas pelagia]) HSP 1 Score: 171.0 bits (432), Expect = 6.900e-39 Identity = 93/146 (63.70%), Postives = 113/146 (77.40%), Query Frame = 0 Query: 26 PSTARFAASSVGTKDIVDTAVDAGSFKTLATALTAAGLIDTLKGPGPFTVFAPTDEAFGKIDPAALNALLEDKAKLTSILTYHVVSGRVPASDVVKLSSAMTVQGSTVEIAVSSSGVKLNNANVVATDVQASNGIIHVIDTVLLPG 172 P+ A DIVDTAV AGSF+TL TA+ AAGL++TLKG GPFTVFAPTDEAF KI A L ALL D+ KLT +LTYHVVSG+V A+DV+ ++SA TVQG T+ I +S GVK+N+ANV ATD++ SNG+IHVIDTVL+PG Sbjct: 6 PAYADHHGDKKAAADIVDTAVAAGSFETLVTAVQAAGLVETLKGEGPFTVFAPTDEAFAKIPQADLEALLADREKLTQVLTYHVVSGKVMAADVISMTSAETVQGGTLTID-ASDGVKVNDANVTATDIKVSNGVIHVIDTVLMPG 150
BLAST of NO18G00330 vs. NCBI_GenBank
Match: WP_009519191.1 (MULTISPECIES: fasciclin domain-containing protein [Hydrogenophaga] >CDN86715.1 hypothetical protein BN948_01123 [Hydrogenophaga intermedia] >AOS79538.1 hypothetical protein Q5W_11470 [Hydrogenophaga sp. PBC]) HSP 1 Score: 169.9 bits (429), Expect = 1.500e-38 Identity = 94/139 (67.63%), Postives = 111/139 (79.86%), Query Frame = 0 Query: 32 AASSVGTKDIVDTAVDAGSFKTLATALTAAGLIDTLKGPGPFTVFAPTDEAFGKIDPAALNALLEDKAKLTSILTYHVVSGRVPASDVVKLSSAMTVQGSTVEIAVSSSGVKLNNANVVATDVQASNGIIHVIDTVLLP 171 A ++ KDIVDTAV AGSFKTL TA+ AAGL+DTLKGPGPFTVFAPTDEAF KI A L+ALL+DKAKLTS+LTYHVV G+V A D VK TVQGS + + +S GV ++NA VV+TDV ASNG+IHVIDTV++P Sbjct: 14 ALATAHAKDIVDTAVSAGSFKTLVTAVQAAGLVDTLKGPGPFTVFAPTDEAFAKIPKAQLDALLKDKAKLTSVLTYHVVPGKVMAKD-VKAGKVKTVQGSELTVG-TSGGVTVDNAKVVSTDVVASNGVIHVIDTVIMP 150
BLAST of NO18G00330 vs. NCBI_GenBank
Match: WP_054676964.1 (fasciclin domain-containing protein [Photobacterium sp. JCM 19050]) HSP 1 Score: 169.5 bits (428), Expect = 2.000e-38 Identity = 94/136 (69.12%), Postives = 109/136 (80.15%), Query Frame = 0 Query: 39 KDIVDTAVDAGSFKTLATALTAAGLIDTLKGPGPFTVFAPTDEAFGKIDPAALNALL--EDKAKLTSILTYHVVSGRVPASDVVKLSSAMTVQGSTVEIAVSSSGVKLNNANVVATDVQASNGIIHVIDTVLLPGS 173 KDIVDTAV GSF TL TA+ AAGL+DTLKG GPFTVFAPTDEAF K+ + LL E+K LTSILTYHVVSG+V A+DVV L+SA TVQG +VEI V S VK++NANVV TDV+ASNG+IHVID VL+PG+ Sbjct: 29 KDIVDTAVANGSFTTLVTAVKAAGLVDTLKGDGPFTVFAPTDEAFAKLPEGTVQKLLLPENKELLTSILTYHVVSGKVMAADVVNLTSAKTVQGESVEINVDSGKVKVDNANVVLTDVKASNGVIHVIDAVLMPGN 164 The following BLAST results are available for this feature:
BLAST of NO18G00330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G00330 ID=NO18G00330|Name=NO18G00330|organism=Nannochloropsis oceanica|type=gene|length=2837bpback to top protein sequence of NO18G00330.1 >NO18G00330.1-protein ID=NO18G00330.1-protein|Name=NO18G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bpback to top Synonyms
Publications
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