jgi.p|Nanoce1779_2|560653, gene_9540 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|560653
Unique Namegene_9540
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_44:49839..52621 +

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Properties
Property NameValue
TranscriptId560739
ProteinId560653
Product nameputative methylcrotonoyl-CoA carboxylase subunit alpha
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:49839..52621 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004485methylcrotonoyl-CoA carboxylase activity
GO:0016874ligase activity
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0009374biotin binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL064ncniL064Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01040NO18G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560653mRNA_9540-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560653mRNA_9540Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|560653

>mRNA_9540-protein ID=mRNA_9540-protein|Name=jgi.p|Nanoce1779_2|560653|organism=Nannochloropsis oceanica|type=polypeptide|length=696bp
MWVTRRLPAARLATQRRLLPLHMRALSSAAAAVRAIPALETSTIIKKLLI
ANRGEIACRIIRTARKMGIKTVAVYSDADARAQFVQMADEAHWIGPSPTR
ESYLVKEKILAVAQRAGAQALHPGYGFLSENPDFAEMCQAAGVLFVGPSV
SALRAMGSKAAAKQIMTDAGVPVTPSYYGEDQDDARLVAEAEKVGYPVMI
KAVTGGGGKGMRRVLSASDFLPALEACRREALKSFGRDRMLIEKYLVDPR
HIELQVFGDSHGNAVHLYERDCSVQRRHQKVLEESPAPGLDRGMREEMGR
AAVLAAKAVGYTGAGTVEFLVDPVTEAFYFCEMNTRLQVEHCVTEMVTGV
DLVEWQLRVAAGEPLPVVKQEEIMTKGHAIEARIYAENPAKGFLPATGFL
KRLRTPKAEEGGVRVETGVVEGDEVSMFYDPMIAKLLTWAPTRGEALRKM
KGALQEYQIAGLPNNLEFLERCVGHPAFARGAVTTGFLVEHERDVSIPPP
SPPSNHLVALAAHALVEGREGGTRGGSPWVGGAWRGLSGERSLPLTMVME
GSSSSNDDEREATIDGSVTYKYHAWIKDGGPRDGAAIQLWLRSGGLVDDP
LSRLAFSLSVPAIALGKESGGSIHPKVIAPMPGKVVKVLVKDGEEVKKGQ
ALMILEAMKMEHVIAAPRDATVEAVARGVGDVVQEGVALISLQAV*
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Synonyms
Publications