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Properties
Property Name | Value |
TranscriptId | 560739 |
Track | FilteredModels2 |
ProteinId | 560653 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_44 | supercontig | scaffold_44:49839..52621 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9540 ID=mRNA_9540|Name=jgi.p|Nanoce1779_2|560653|organism=Nannochloropsis oceanica|type=mRNA|length=2639bp ACAGGCAAGGGGTGCCGCAGCAGCAGCGTCAATTGCAGTTCCATTTCTAG GTCAAGACGCCGCAGGACCCGCCGCGTGTCTTCACGACAGCATTACCTCC TGCTTCCAAGCAACCCACCCCACTATCACTGCTCAGCCCATTTGACTTTC AACCAATGTGGGTCACCCGCAGGCTCCCTGCCGCGCGCCTTGCTACACAG AGACGCTTGCTACCGCTTCATATGCGTGCCTTGTCTTCTGCTGCGGCTGC CGTTCGCGCCATCCCGGCCCTCGAAACAAGCACCATAATTAAAAAACTTC TGATCGCAAACCGCGGTGAAATTGCCTGCCGTATAATCCGGACCGCCCGC AAAATGGGGATCAAGACAGTGGCCGTTTACAGCGATGCAGACGCCAGGGC GCAATTCGTGCAGATGGCCGACGAGGCGCATTGGATTGGTCCCTCTCCCA CCAGGGAATCGTACCTGGTTAAGGAGAAGATCCTGGCGGTCGCTCAGCGA GCAGGCGCTCAGGCCTTGCATCCTGGTTATGGCTTCCTGTCCGAGAACCC GGATTTCGCAGAGATGTGCCAGGCAGCGGGGGTGCTATTCGTCGGGCCTT CTGTGTCGGCGCTGAGGGCAATGGGGTCCAAGGCGGCCGCGAAACAGATA ATGACTGATGCAGGCGTGCCTGTCACTCCATCTTATTACGGCGAAGATCA AGATGACGCGCGCTTGGTGGCAGAGGCGGAGAAGGTCGGGTATCCCGTGA TGATTAAGGCAGTGACTGGAGGGGGGGGGAAGGGGATGAGGAGGGTATTA AGCGCCTCTGATTTTTTACCAGCGCTCGAGGCGTGTCGCCGGGAGGCCTT GAAGTCCTTCGGGAGGGATAGGATGCTGATTGAGAAGTATTTGGTCGATC CCCGTCATATTGAACTTCAGGTTTTCGGAGACAGCCATGGAAATGCCGTG CATTTGTATGAGAGAGATTGTAGCGTGCAAAGGCGACATCAGAAGGTCCT TGAAGAATCGCCCGCGCCTGGGTTGGACAGGGGAATGAGGGAGGAAATGG GTCGAGCCGCTGTGTTGGCGGCGAAGGCTGTGGGGTACACGGGGGCAGGT ACGGTGGAATTTCTGGTTGATCCTGTGACGGAGGCCTTTTATTTCTGTGA GATGAACACACGGCTACAGGTGGAGCACTGTGTGACGGAGATGGTGACAG GCGTCGACTTGGTTGAGTGGCAGCTCAGGGTAGCGGCGGGCGAGCCCCTG CCAGTGGTGAAACAGGAGGAAATAATGACAAAAGGGCATGCAATTGAAGC AAGAATCTATGCCGAGAATCCAGCGAAAGGATTTTTGCCTGCAACAGGTT TTTTGAAGAGGCTACGGACGCCCAAGGCGGAGGAAGGGGGGGTGAGGGTG GAAACTGGGGTGGTGGAGGGGGATGAGGTTAGTATGTTTTATGACCCCAT GATTGCCAAGCTGCTTACATGGGCACCGACAAGGGGGGAGGCATTACGGA AGATGAAGGGGGCGTTGCAGGAGTATCAGATCGCGGGGTTACCCAACAAC CTGGAGTTTCTCGAGAGGTGTGTGGGGCATCCAGCCTTTGCACGAGGAGC GGTGACAACAGGTTTCTTGGTTGAGCATGAAAGGGACGTGTCTATTCCTC CTCCGAGTCCGCCGTCAAATCATTTGGTGGCTTTGGCAGCGCATGCATTG GTGGAGGGGAGGGAGGGAGGGACGCGGGGGGGTTCGCCATGGGTGGGGGG GGCATGGAGGGGGCTGTCTGGAGAGCGGAGTTTGCCTTTGACGATGGTGA TGGAGGGCAGCAGCAGCAGCAATGACGATGAACGAGAAGCGACCATTGAT GGAAGCGTCACCTACAAATATCACGCTTGGATCAAGGACGGAGGTCCGAG AGACGGAGCCGCCATCCAGCTCTGGCTGCGCTCGGGTGGGTTAGTCGACG ACCCCCTCTCTCGTCTCGCTTTCTCTTTAAGCGTGCCTGCTATAGCCCTG GGGAAAGAATCGGGAGGGAGTATCCATCCCAAAGTGATTGCGCCCATGCC GGGGAAAGTGGTCAAGGTGCTGGTGAAGGATGGAGAGGAAGTGAAGAAGG GCCAGGCGCTTATGATTTTGGAAGCGATGAAGATGGAGCATGTGATTGCG GCGCCACGGGACGCGACAGTTGAGGCTGTGGCACGAGGGGTGGGAGATGT GGTGCAGGAAGGGGTTGCGCTAATCAGCCTTCAGGCAGTTTGAGAGGGAA AGGGAGGGAAGGTAGGCATGCGGTGGGAATATGCGGGGACAGGAGTAGTG TGTAGGTTTGTGCAATAGAATTTATACAAGGAGGGATGGGGGGAGGGAAG GATAGAGAGCAGGGGCGAAGGCATCAAAAAATAAATTGGACCGAGGAATT GCGGGAACTGGGTTTTCTTTTTCATTTAAAAAAATTTATGTCAATAACCT GTGGGCCGATAGTGATGAGTGTAGGTAGGTATATTTAATATCTCCGTGTG CGAAGAGTCAGGGAAGGAAGCGAGCGAATGGTTGTTTAACTAGTTGTCTA TAATTCCGCAATGAAGAAATATACCACTTTCTGGAACCAAAACAACAAGA GTGAAAAAAAAAAGTAAAAAAGTGAGAAAGTCTGCAAAG back to topprotein sequence of jgi.p|Nanoce1779_2|560653 >mRNA_9540-protein ID=mRNA_9540-protein|Name=jgi.p|Nanoce1779_2|560653|organism=Nannochloropsis oceanica|type=polypeptide|length=696bp MWVTRRLPAARLATQRRLLPLHMRALSSAAAAVRAIPALETSTIIKKLLI ANRGEIACRIIRTARKMGIKTVAVYSDADARAQFVQMADEAHWIGPSPTR ESYLVKEKILAVAQRAGAQALHPGYGFLSENPDFAEMCQAAGVLFVGPSV SALRAMGSKAAAKQIMTDAGVPVTPSYYGEDQDDARLVAEAEKVGYPVMI KAVTGGGGKGMRRVLSASDFLPALEACRREALKSFGRDRMLIEKYLVDPR HIELQVFGDSHGNAVHLYERDCSVQRRHQKVLEESPAPGLDRGMREEMGR AAVLAAKAVGYTGAGTVEFLVDPVTEAFYFCEMNTRLQVEHCVTEMVTGV DLVEWQLRVAAGEPLPVVKQEEIMTKGHAIEARIYAENPAKGFLPATGFL KRLRTPKAEEGGVRVETGVVEGDEVSMFYDPMIAKLLTWAPTRGEALRKM KGALQEYQIAGLPNNLEFLERCVGHPAFARGAVTTGFLVEHERDVSIPPP SPPSNHLVALAAHALVEGREGGTRGGSPWVGGAWRGLSGERSLPLTMVME GSSSSNDDEREATIDGSVTYKYHAWIKDGGPRDGAAIQLWLRSGGLVDDP LSRLAFSLSVPAIALGKESGGSIHPKVIAPMPGKVVKVLVKDGEEVKKGQ ALMILEAMKMEHVIAAPRDATVEAVARGVGDVVQEGVALISLQAV* back to topmRNA from alignment at scaffold_44:49839..52621+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9540 ID=mRNA_9540|Name=jgi.p|Nanoce1779_2|560653|organism=Nannochloropsis oceanica|type=mRNA|length=2783bp|location=Sequence derived from alignment at scaffold_44:49839..52621+ (Nannochloropsis oceanica) ACAGGCAAGGGGTGCCGCAGCAGCAGCGTCAATTGCAGTTCCATTTCTAG
GTCAAGACGCCGCAGGACCCGCCGCGTGTCTTCACGACAGCATTACCTCC
TGCTTCCAAGCAACCCACCCCACTATCACTGCTCAGCCCATTTGACTTTC
AACCAATGTGGGTCACCCGCAGGCTCCCTGCCGCGCGCCTTGCTACACAG
AGACGCTTGCTACCGCTTCATATGCGTGCCTTGTCTTCTGCTGCGGCTGC
CGTTCGCGCCATCCCGGCCCTCGAAACAAGCACCATAATTAAAAAACTTC
TGATCGCAAACCGCGGTGAAATTGCCTGCCGTATAATCCGGACCGCCCGC
AAAATGGGGATCAAGACAGTGGCCGTTTACAGCGATGCAGACGCCAGGGC
GCAATTCGTGCAGATGGCCGACGAGGCGCATTGGATTGGTCCCTCTCCCA
CCAGGGAATCGTACCTGGTTAAGGAGAAGATCCTGGCGGTCGCTCAGCGA
GCAGGCGCTCAGGCCTTGCATCCTGGTTATGGCTTCCTGTCCGAGAACCC
GGATTTCGCAGAGATGTGCCAGGCAGCGGGGGTGCTATTCGTCGGGCCTT
CTGTGTCGGCGCTGAGGGCAATGGGGTCCAAGGCGGCCGCGAAACAGATA
ATGACTGATGCAGGCGTGCCTGTCACTCCATCTTATTACGGCGAAGATCA
AGATGACGCGCGCTTGGTGGCAGAGGCGGAGAAGGTCGGGTATCCCGTGA
TGATTAAGGCAGTGACTGGAGGGGGGGGGAAGGGGATGAGGAGGGTATTA
AGCGCCTCTGATTTTTTACCAGCGCTCGAGGCGTGTCGCCGGGAGGCCTT
GAAGTCCTTCGGGAGGGATAGGATGCTGATTGAGAAGTATTTGGTCGATC
CCCGTCATATTGAACTTCAGGTTTTCGGAGACAGCCATGGAAATGCCGTG
CATTTGTATGAGAGAGATTGTAGCGTGCAAAGGCGACATCAGAAGGTCCT
TGAAGAATCGCCCGCGCCTGGGTTGGACAGGGGAATGAGGGAGGAAATGG
GTCGAGCCGCTGTGTTGGCGGCGAAGGCTGTGGGGTACACGGGGGCAGGT
ACGGTGGAATTTCTGGTTGATCCTGTGACGGAGGCCTTTTATTTCTGTGA
GATGAACACACGGCTACAGGTGGAGCACTGTGTGACGGAGATGGTGACAG
GCGTCGACTTGGTTGAGTGGCAGCTCAGGGTAGCGGCGGGCGAGCCCCTG
CCAGTGGTGAAACAGGAGGAAATAATGACAAAAGGGCATGCAATTGAAGC
AAGAATCTATGCCGAGAATCCAGCGAAAGGATTTTTGCCTGCAACAGGTT
TTTTGAAGAGGCTACGGACGCCCAAGGCGGAGGAAGGGGGGGTGAGGGTG
GAAACTGGGGTGGTGGAGGGGGATGAGGTTAGTATGTTTTATGACCCCAT
GATTGCCAAGCTGCTTACATGGGCACCGACAAGGGGGGAGGCATTACGGA
AGATGAAGGGGGCGTTGCAGGAGTATCAGATCGCGGGGTTACCCAACAAC
CTGGAGTTTCTCGAGAGGTGTGTGGGGCATCCAGCCTTTGCACGAGGAGC
GGTGACAACAGGTTTCTTGGTTGAGCATGAAAGGGACGTGTCTATTCCTC
CTCCGAGTCCGCCGTCAAATCATTTGGTGGCTTTGGCAGCGCATGCATTG
GTGGAGGGGAGGGAGGGAGGGACGCGGGGGGGTTCGCCATGGGTGGGGGG
GGCATGGAGGGGGCTGTCTGGAGAGCGGAGTTTGCCTTTGACGATGGTGA
TGGAGGGGTTGGAGGAGGTGCCGCTTGTGCTGCGAGTAAATGTTTCTCCC
CCCAATGAGGAAAAGAGGGAGGAAGGGGTGGTAGTGAGCGTGAAGACGCC
GGACGGGGAGGTGCATCGTGTGGTGGGACGCCACGGCAAGAACAGCAGCA
GCAGCAGCAGCAGCAATGACGATGAACGAGAAGCGACCATTGATGGAAGC
GTCACCTACAAATATCACGCTTGGATCAAGGACGGAGGTCCGAGAGACGG
AGCCGCCATCCAGCTCTGGCTGCGCTCGGGTGGGTTAGTCGACGACCCCC
TCTCTCGTCTCGCTTTCTCTTTAAGCGTGCCTGCTATAGCCCTGGGGAAA
GAATCGGGAGGGAGTATCCATCCCAAAGTGATTGCGCCCATGCCGGGGAA
AGTGGTCAAGGTGCTGGTGAAGGATGGAGAGGAAGTGAAGAAGGGCCAGG
CGCTTATGATTTTGGAAGCGATGAAGATGGAGCATGTGATTGCGGCGCCA
CGGGACGCGACAGTTGAGGCTGTGGCACGAGGGGTGGGAGATGTGGTGCA
GGAAGGGGTTGCGCTAATCAGCCTTCAGGCAGTTTGAGAGGGAAAGGGAG
GGAAGGTAGGCATGCGGTGGGAATATGCGGGGACAGGAGTAGTGTGTAGG
TTTGTGCAATAGAATTTATACAAGGAGGGATGGGGGGAGGGAAGGATAGA
GAGCAGGGGCGAAGGCATCAAAAAATAAATTGGACCGAGGAATTGCGGGA
ACTGGGTTTTCTTTTTCATTTAAAAAAATTTATGTCAATAACCTGTGGGC
CGATAGTGATGAGTGTAGGTAGGTATATTTAATATCTCCGTGTGCGAAGA
GTCAGGGAAGGAAGCGAGCGAATGGTTGTTTAACTAGTTGTCTATAATTC
CGCAATGAAGAAATATACCACTTTCTGGAACCAAAACAACAAGAGTGAAA
AAAAAAAGTAAAAAAGTGAGAAAGTCTGCAAAG back to topCoding sequence (CDS) from alignment at scaffold_44:49839..52621+ >mRNA_9540 ID=mRNA_9540|Name=jgi.p|Nanoce1779_2|560653|organism=Nannochloropsis oceanica|type=CDS|length=4176bp|location=Sequence derived from alignment at scaffold_44:49839..52621+ (Nannochloropsis oceanica) ATGTGGGTCACCCGCAGGCTCCCTGCCGCGCGCCTTGCTACACAGAGACG CTTGCTACCGCTTCATATGCGTGCCTTGTCTTCTGCTGCGGCTGCCGTTC GCGCCATCCCGGCCCTCGAAACAAGCACCATAATTAAAAAACTTCTGATC GCAAACCGCGGTGAAATTGCCTGCCGTATAATCCGGACCGCCCGCAAAAT GGGGATCAAGACAGTGGCCGTTTACAGCGATGCAGACGCCAGGGCGCAAT TCGTGCAGATGGCCGACGAGGCGCATTGGATTGGTCCCTCTCCCACCAGG GAATCGTACCTGGTTAAGGAGAAGATCCTGGCGGTCGCTCAGCGAGCAGG CGCTCAGGCCTTGCATCCTGGTTATGGCTTCCTGTCCGAGAACCCGGATT TCGCAGAGATGTGCCAGGCAGCGGGGGTGCTATTCGTCGGGCCTTCTGTG TCGGCGCTGAGGGCAATGGGGTCCAAGGCGGCCGCGAAACAGATAATGAC TGATGCAGGCGTGCCTGTCACTCCATCTTATTACGGCGAAGATCAAGATG ACGCGCGCTTGGTGGCAGAGGCGGAGAAGGTCGGGTATCCCGTGATGATT AAGGCAGTGACTGGAGGGGGGGGGAAGGGGATGAGGAGGGTATTAAGCGC CTCTGATTTTTTACCAGCGCTCGAGGCGTGTCGCCGGGAGGCCTTGAAGT CCTTCGGGAGGGATAGGATGCTGATTGAGAAGTATTTGGTCGATCCCCGT CATATTGAACTTCAGGTTTTCGGAGACAGCCATGGAAATGCCGTGCATTT GTATGAGAGAGATTGTAGCGTGCAAAGGCGACATCAGAAGGTCCTTGAAG AATCGCCCGCGCCTGGGTTGGACAGGGGAATGAGGGAGGAAATGGGTCGA GCCGCTGTGTTGGCGGCGAAGGCTGTGGGGTACACGGGGGCAGGTACGGT GGAATTTCTGGTTGATCCTGTGACGGAGGCCTTTTATTTCTGTGAGATGA ACACACGGCTACAGGTGGAGCACTGTGTGACGGAGATGGTGACAGGCGTC GACTTGGTTGAGTGGCAGCTCAGGGTAGCGGCGGGCGAGCCCCTGCCAGT GGTGAAACAGGAGGAAATAATGACAAAAGGGCATGCAATTGAAGCAAGAA TCTATGCCGAGAATCCAGCGAAAGGATTTTTGCCTGCAACAGGTTTTTTG AAGAGGCTACGGACGCCCAAGGCGGAGGAAGGGGGGGTGAGGGTGGAAAC TGGGGTGGTGGAGGGGGATGAGGTTAGTATGTTTTATGACCCCATGATTG CCAAGCTGCTTACATGGGCACCGACAAGGGGGGAGGCATTACGGAAGATG AAGGGGGCGTTGCAGGAGTATCAGATCGCGGGGTTACCCAACAACCTGGA GTTTCTCGAGAGGTGTGTGGGGCATCCAGCCTTTGCACGAGGAGCGGTGA CAACAGGTTTCTTGGTTGAGCATGAAAGGGACGTGTCTATTCCTCCTCCG AGTCCGCCGTCAAATCATTTGGTGGCTTTGGCAGCGCATGCATTGGTGGA GGGGAGGGAGGGAGGGACGCGGGGGGGTTCGCCATGGGTGGGGGGGGCAT GGAGGGGGCTGTCTGGAGAGCGGAGTTTGCCTTTGACGATGGTGATGGAG GGCAGCAGCAGCAGCAATGACGATGAACGAGAAGCGACCATTGATGGAAG CGTCACCTACAAATATCACGCTTGGATCAAGGACGGAGGTCCGAGAGACG GAGCCGCCATCCAGCTCTGGCTGCGCTCGGGTGGGTTAGTCGACGACCCC CTCTCTCGTCTCGCTTTCTCTTTAAGCGTGCCTGCTATAGCCCTGGGGAA AGAATCGGGAGGGAGTATCCATCCCAAAGTGATTGCGCCCATGCCGGGGA AAGTGGTCAAGGTGCTGGTGAAGGATGGAGAGGAAGTGAAGAAGGGCCAG GCGCTTATGATTTTGGAAGCGATGAAGATGGAGCATGTGATTGCGGCGCC ACGGGACGCGACAGTTGAGGCTGTGGCACGAGGGGTGGGAGATGTGGTGC AGGAAGGGGTTGCGCTAATCAGCCTTCAGGCAGTTTGAATGTGGGTCACC CGCAGGCTCCCTGCCGCGCGCCTTGCTACACAGAGACGCTTGCTACCGCT TCATATGCGTGCCTTGTCTTCTGCTGCGGCTGCCGTTCGCGCCATCCCGG CCCTCGAAACAAGCACCATAATTAAAAAACTTCTGATCGCAAACCGCGGT GAAATTGCCTGCCGTATAATCCGGACCGCCCGCAAAATGGGGATCAAGAC AGTGGCCGTTTACAGCGATGCAGACGCCAGGGCGCAATTCGTGCAGATGG CCGACGAGGCGCATTGGATTGGTCCCTCTCCCACCAGGGAATCGTACCTG GTTAAGGAGAAGATCCTGGCGGTCGCTCAGCGAGCAGGCGCTCAGGCCTT GCATCCTGGTTATGGCTTCCTGTCCGAGAACCCGGATTTCGCAGAGATGT GCCAGGCAGCGGGGGTGCTATTCGTCGGGCCTTCTGTGTCGGCGCTGAGG GCAATGGGGTCCAAGGCGGCCGCGAAACAGATAATGACTGATGCAGGCGT GCCTGTCACTCCATCTTATTACGGCGAAGATCAAGATGACGCGCGCTTGG TGGCAGAGGCGGAGAAGGTCGGGTATCCCGTGATGATTAAGGCAGTGACT GGAGGGGGGGGGAAGGGGATGAGGAGGGTATTAAGCGCCTCTGATTTTTT ACCAGCGCTCGAGGCGTGTCGCCGGGAGGCCTTGAAGTCCTTCGGGAGGG ATAGGATGCTGATTGAGAAGTATTTGGTCGATCCCCGTCATATTGAACTT CAGGTTTTCGGAGACAGCCATGGAAATGCCGTGCATTTGTATGAGAGAGA TTGTAGCGTGCAAAGGCGACATCAGAAGGTCCTTGAAGAATCGCCCGCGC CTGGGTTGGACAGGGGAATGAGGGAGGAAATGGGTCGAGCCGCTGTGTTG GCGGCGAAGGCTGTGGGGTACACGGGGGCAGGTACGGTGGAATTTCTGGT TGATCCTGTGACGGAGGCCTTTTATTTCTGTGAGATGAACACACGGCTAC AGGTGGAGCACTGTGTGACGGAGATGGTGACAGGCGTCGACTTGGTTGAG TGGCAGCTCAGGGTAGCGGCGGGCGAGCCCCTGCCAGTGGTGAAACAGGA GGAAATAATGACAAAAGGGCATGCAATTGAAGCAAGAATCTATGCCGAGA ATCCAGCGAAAGGATTTTTGCCTGCAACAGGTTTTTTGAAGAGGCTACGG ACGCCCAAGGCGGAGGAAGGGGGGGTGAGGGTGGAAACTGGGGTGGTGGA GGGGGATGAGGTTAGTATGTTTTATGACCCCATGATTGCCAAGCTGCTTA CATGGGCACCGACAAGGGGGGAGGCATTACGGAAGATGAAGGGGGCGTTG CAGGAGTATCAGATCGCGGGGTTACCCAACAACCTGGAGTTTCTCGAGAG GTGTGTGGGGCATCCAGCCTTTGCACGAGGAGCGGTGACAACAGGTTTCT TGGTTGAGCATGAAAGGGACGTGTCTATTCCTCCTCCGAGTCCGCCGTCA AATCATTTGGTGGCTTTGGCAGCGCATGCATTGGTGGAGGGGAGGGAGGG AGGGACGCGGGGGGGTTCGCCATGGGTGGGGGGGGCATGGAGGGGGCTGT CTGGAGAGCGGAGTTTGCCTTTGACGATGGTGATGGAGGGCAGCAGCAGC AGCAATGACGATGAACGAGAAGCGACCATTGATGGAAGCGTCACCTACAA ATATCACGCTTGGATCAAGGACGGAGGTCCGAGAGACGGAGCCGCCATCC AGCTCTGGCTGCGCTCGGGTGGGTTAGTCGACGACCCCCTCTCTCGTCTC GCTTTCTCTTTAAGCGTGCCTGCTATAGCCCTGGGGAAAGAATCGGGAGG GAGTATCCATCCCAAAGTGATTGCGCCCATGCCGGGGAAAGTGGTCAAGG TGCTGGTGAAGGATGGAGAGGAAGTGAAGAAGGGCCAGGCGCTTATGATT TTGGAAGCGATGAAGATGGAGCATGTGATTGCGGCGCCACGGGACGCGAC AGTTGAGGCTGTGGCACGAGGGGTGGGAGATGTGGTGCAGGAAGGGGTTG CGCTAATCAGCCTTCAGGCAGTTTGA back to top
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