jgi.p|Nanoce1779_2|604404, gene_8894 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604404
Unique Namegene_8894
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_29:115246..117623 +

Link to JBrowse

Properties
Property NameValue
TranscriptId604490
ProteinId604404
Product nameacyl-coenzyme A oxidase 1, palmitoyl
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:115246..117623 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003997acyl-CoA oxidase activity
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0003995acyl-CoA dehydrogenase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL046ncniL046Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02010NO18G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604404mRNA_8894-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604404mRNA_8894Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|604404

>mRNA_8894-protein ID=mRNA_8894-protein|Name=jgi.p|Nanoce1779_2|604404|organism=Nannochloropsis oceanica|type=polypeptide|length=534bp
MDVAPELVQERRNASFSPASLTQLVDGGAAKVERRRWLRSLILADPIFSN
EDAIYLNHTERYKRALAKCGRLDQLINTHGLSEEDGAVLRSLASEDLPTL
LHDLMFLPCLLSLCSEEQQAYWVPLARSKKVLGCYAQTEMGHGSNIQALQ
TTATFDPATDEFVLDTPTIQSFKWWPGTLGRTANTAMVIARLLLPSSPPL
SPSTSYQDLGIHNFIVPLRDLHTHALLPGVVARDIGPKVAFAGMDNGCLE
LHSVRIPRANLAQRFVRVSRDGVWSRVEGTHPKAAYVTMMQVRAIIVVHS
ARELSKAATIAIRYSAVRHQGYDADDSGPVKREHQILDYPSQQYRLLPLL
AASIGFFFCGRAVQALLAETEQALLLGKKGQAEVGQQMGKAHASLAGLKS
LCTTIAAEGIEDCRKCCGGHGYLACSGLPELSGISYFLSLSPSLPPFLPF
FVVFIRSFTLVFSSLSSLCRALYWLPHPILYISCAHCRLARRPFLSCSQI
QCLIIPLFLSFFPSLFPSLSRRQFPPAMHGGGR*
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Synonyms
Publications