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Properties
| Property Name | Value |
|---|
| TranscriptId | 604490 |
| Track | FilteredModels2 |
| ProteinId | 604404 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_29 | supercontig | scaffold_29:115246..117623 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8894 ID=mRNA_8894|Name=jgi.p|Nanoce1779_2|604404|organism=Nannochloropsis oceanica|type=mRNA|length=1817bp
CAGCTCACCCGAGCACAGTACATCAGGAGCGGCGTCAAGCAGCAGCGGTA
GCAACACATCCATCATCACCACCTTCATGGACGTCGCCCCAGAACTCGTT
CAAGAACGACGCAATGCCTCCTTCTCGCCCGCCTCCCTGACCCAGCTCGT
TGACGGTGGCGCTGCCAAGGTCGAGCGTCGACGCTGGCTGCGAAGCCTCA
TTCTAGCAGACCCCATTTTTAGCAATGAAGATGCCATCTACCTCAATCAC
ACCGAGCGCTACAAACGTGCTCTGGCGAAATGTGGTCGCTTGGACCAGTT
GATCAATACTCACGGGCTGAGCGAGGAGGATGGCGCTGTCCTTCGTTCTC
TCGCCTCGGAGGATCTTCCCACCCTCTTGCACGACCTCATGTTCCTCCCC
TGCCTCCTGAGTCTTTGCAGCGAAGAGCAACAAGCTTACTGGGTTCCCTT
AGCGCGAAGCAAGAAAGTGTTAGGATGCTATGCGCAGACGGAGATGGGGC
ATGGCAGTAACATTCAAGCCTTGCAAACGACAGCGACCTTTGATCCCGCA
ACCGATGAATTCGTCCTCGACACGCCCACCATTCAGTCCTTCAAGTGGTG
GCCTGGGACACTGGGCCGCACCGCCAACACCGCAATGGTCATCGCCCGTC
TCCTGCTTCCTTCCTCCCCTCCTTTGTCTCCTTCCACCTCCTACCAAGAC
CTGGGCATCCACAACTTTATCGTCCCTCTACGTGACCTTCACACGCATGC
GCTGCTCCCTGGCGTGGTGGCGCGGGACATAGGACCCAAGGTAGCCTTTG
CGGGCATGGACAATGGCTGTCTAGAACTGCATTCTGTCAGAATTCCACGC
GCAAATCTCGCGCAGCGGTTTGTGCGTGTCTCAAGAGACGGGGTGTGGAG
CCGGGTGGAAGGGACGCACCCCAAGGCGGCTTACGTTACCATGATGCAGG
TCCGTGCTATCATTGTCGTCCACTCTGCCCGGGAGCTGAGCAAAGCTGCC
ACCATCGCCATTCGATATTCTGCCGTGCGCCACCAAGGGTATGATGCCGA
CGATTCCGGCCCTGTGAAACGCGAGCATCAAATCCTTGACTACCCTTCAC
AGCAATACCGCCTCCTTCCCCTCCTTGCCGCTTCAATTGGCTTCTTTTTC
TGTGGACGTGCCGTGCAAGCCTTGCTGGCGGAAACTGAACAAGCACTCTT
GTTGGGGAAAAAAGGCCAAGCGGAAGTAGGGCAGCAGATGGGGAAGGCCC
ATGCGTCGCTGGCAGGGTTGAAAAGTCTATGTACGACGATCGCTGCCGAG
GGGATTGAAGATTGTAGGAAATGTTGCGGAGGACATGGTTATCTGGCTTG
CTCGGGCCTGCCGGAGTTGTCAGGTATATCTTATTTTCTCTCTTTGTCTC
CCTCTCTTCCTCCCTTCCTCCCTTTTTTCGTTGTCTTCATTCGTTCCTTT
ACTCTCGTCTTTTCCTCCTTATCCTCCTTGTGTCGCGCCCTTTATTGGCT
CCCCCATCCCATCCTCTATATTTCATGTGCCCACTGCCGTCTAGCCCGAC
GCCCGTTTCTTTCATGCTCCCAAATCCAGTGCCTCATCATTCCACTCTTT
CTCTCCTTCTTTCCCTCCCTCTTTCCCTCTCTTTCCCGCAGGCAATTTCC
TCCAGCAATGCACGGTGGAGGGAGATAATGTCTTGCTGACCCAACAAACC
ACGGGCTATTTATTAAAGAGCTACATCAAGTGGCGGATGGGGGATGGGAG
TGAGGGAGAGAGGGGGGGTCTGGATGAGGATTTGTGGTACTTTGCAAGTG
CCTCGCAGGGGGAGGGC back to topprotein sequence of jgi.p|Nanoce1779_2|604404 >mRNA_8894-protein ID=mRNA_8894-protein|Name=jgi.p|Nanoce1779_2|604404|organism=Nannochloropsis oceanica|type=polypeptide|length=534bp
MDVAPELVQERRNASFSPASLTQLVDGGAAKVERRRWLRSLILADPIFSN
EDAIYLNHTERYKRALAKCGRLDQLINTHGLSEEDGAVLRSLASEDLPTL
LHDLMFLPCLLSLCSEEQQAYWVPLARSKKVLGCYAQTEMGHGSNIQALQ
TTATFDPATDEFVLDTPTIQSFKWWPGTLGRTANTAMVIARLLLPSSPPL
SPSTSYQDLGIHNFIVPLRDLHTHALLPGVVARDIGPKVAFAGMDNGCLE
LHSVRIPRANLAQRFVRVSRDGVWSRVEGTHPKAAYVTMMQVRAIIVVHS
ARELSKAATIAIRYSAVRHQGYDADDSGPVKREHQILDYPSQQYRLLPLL
AASIGFFFCGRAVQALLAETEQALLLGKKGQAEVGQQMGKAHASLAGLKS
LCTTIAAEGIEDCRKCCGGHGYLACSGLPELSGISYFLSLSPSLPPFLPF
FVVFIRSFTLVFSSLSSLCRALYWLPHPILYISCAHCRLARRPFLSCSQI
QCLIIPLFLSFFPSLFPSLSRRQFPPAMHGGGR* back to topmRNA from alignment at scaffold_29:115246..117623+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8894 ID=mRNA_8894|Name=jgi.p|Nanoce1779_2|604404|organism=Nannochloropsis oceanica|type=mRNA|length=2378bp|location=Sequence derived from alignment at scaffold_29:115246..117623+ (Nannochloropsis oceanica)
CAGCTCACCCGAGCACAGTACATCAGGAGCGGCGTCAAGCAGCAGCGGTA
GCAACACATCCATCATCACCACCTTCATGGACGTCGCCCCAGAACTCGTT
CAAGAACGACGCAATGCCTCCTTCTCGCCCGCCTCCCTGACCCAGCTCGT
TGACGGTGGCGCTGCCAAGGTCGAGCGTCGACGCTGGCTGCGAAGCCTCA
TTCTAGCAGACCCCATTTTTAGCAATGAAGATGCCATCTACCTCAATCAC
ACCGAGCGCTACAAACGTGCTCTGGCGAAATGTGGTCGCTTGGACCAGTT
GATCAATACTCACGGGCTGAGCGAGGAGGATGGCGCTGTCCTTCGTTCTC
TCGCCTCGGAGGATCTTCCCACCCTCTTGCACGACCTCATGTTCCTCCCC
TGCCTCCTGAGTCTTTGCAGCGAAGAGCAACAAGCTTACTGGGTTCCCTT
AGCGCGAAGCAAGAAAGTGTTAGGATGCTATGCGCAGACGGAGATGGGGC
ATGGCAGTAACATTCAAGCCTTGCAAACGACAGCGACCTTTGATCCCGCA
ACCGATGAATTCGTCCTCGACACGCCCACCATTCAGTCCTTCAAGTGGTG
GCCTGGGACACTGGGCCGGTACGTCCCGTTTTCCTTTCTTGCTTTGTTCA
TACCCTCTGTAGAAGTTGCAGCTTGTCGTTTCTTTGTATGTATCAACGTC
CCCTGCTCCCTCCCTTCCTCCCTTTTTCCCTTCCTCCTTTCCCTCCTCCA
CACCCGCAGCACCGCCAACACCGCAATGGTCATCGCCCGTCTCCTGCTTC
CTTCCTCCCCTCCTTTGTCTCCTTCCACCTCCTACCAAGACCTGGGCATC
CACAACTTTATCGTCCCTCTACGTGACCTTCACACGCATGCGCTGCTCCC
TGGCGTGGTGGCGCGGGACATAGGACCCAAGGTAGCCTTTGCGGGCATGG
ACAATGGCTGTCTAGAACTGCATTCTGTCAGAATTCCACGCGCAAATCTC
GCGCAGCGGTTTGTGCGTGTCTCAAGAGACGGGGTGTGGAGCCGGGTGGA
AGGGACGCACCCCAAGGCGGCTTACGTTACCATGATGCAGGTAGGTGGGG
AGGTACATCGTGTGGGGGTTTTGGAAGATCCCTCACTTCCTCCAGCCTTT
CCCATGGAAGATTTTCTGGAATTTATAAAGGACTGTCCCTCGCGTCATTC
TGGATCAGTGTCAGTGTATTTTGCATCGCTCTTGACTCCGAAATGTGTTC
ACGTAGTTACAAATGTGTCTACGTAGTTACCCCCTTTATTTGAAGCACTC
GGGGTCGTGCTAGCATCACCACCCACTCTGCCCGGAACTTGGACGAAGCC
GCCACCATGGCCGTCTAATATTCGGAGACCCCAACAACCGTGGCTCCGGG
GCTCTTCCTTCGGGGGAAAAAAAACACTACTTTATAACATGTAATCGTCT
GGTATGTGACTCATTTCGTCCACCTTATTCTGGGAAATCCAAATGTACAT
ATGTACACAGGTCCGTGCTATCATTGTCGTCCACTCTGCCCGGGAGCTGA
GCAAAGCTGCCACCATCGCCATTCGATATTCTGCCGTGCGCCACCAAGGG
TATGATGCCGACGATTCCGGCCCTGTGAAACGCGAGCATCAAATCCTTGA
CTACCCTTCACAGCAATACCGCCTCCTTCCCCTCCTTGCCGCTTCAATTG
GCTTCTTTTTCTGTGGACGTGCCGTGCAAGCCTTGCTGGCGGAAACTGAA
CAAGCACTCTTGTTGGGGAAAAAAGGCCAAGCGGAAGTAGGGCAGCAGAT
GGGGAAGGCCCATGCGTCGCTGGCAGGGTTGAAAAGTCTATGTACGACGA
TCGCTGCCGAGGGGATTGAAGATTGTAGGAAATGTTGCGGAGGACATGGT
TATCTGGCTTGCTCGGGCCTGCCGGAGTTGTCAGGTATATCTTATTTTCT
CTCTTTGTCTCCCTCTCTTCCTCCCTTCCTCCCTTTTTTCGTTGTCTTCA
TTCGTTCCTTTACTCTCGTCTTTTCCTCCTTATCCTCCTTGTGTCGCGCC
CTTTATTGGCTCCCCCATCCCATCCTCTATATTTCATGTGCCCACTGCCG
TCTAGCCCGACGCCCGTTTCTTTCATGCTCCCAAATCCAGTGCCTCATCA
TTCCACTCTTTCTCTCCTTCTTTCCCTCCCTCTTTCCCTCTCTTTCCCGC
AGGCAATTTCCTCCAGCAATGCACGGTGGAGGGAGATAATGTCTTGCTGA
CCCAACAAACCACGGGCTATTTATTAAAGAGCTACATCAAGTGGCGGATG
GGGGATGGGAGTGAGGGAGAGAGGGGGGGTCTGGATGAGGATTTGTGGTA
CTTTGCAAGTGCCTCGCAGGGGGAGGGC back to topCoding sequence (CDS) from alignment at scaffold_29:115246..117623+ >mRNA_8894 ID=mRNA_8894|Name=jgi.p|Nanoce1779_2|604404|organism=Nannochloropsis oceanica|type=CDS|length=4806bp|location=Sequence derived from alignment at scaffold_29:115246..117623+ (Nannochloropsis oceanica)
ATGGACGTCGCCCCAGAACTCGTTCAAGAACGACGCAATGCCTCCTTCTC
GCCCGCCTCCCTGACCCAGCTCGTTGACGGTGGCGCTGCCAAGGTCGAGC
GTCGACGCTGGCTGCGAAGCCTCATTCTAGCAGACCCCATTTTTAGCAAT
GAAGATGCCATCTACCTCAATCACACCGAGCGCTACAAACGTGCTCTGGC
GAAATGTGGTCGCTTGGACCAGTTGATCAATACTCACGGGCTGAGCGAGG
AGGATGGCGCTGTCCTTCGTTCTCTCGCCTCGGAGGATCTTCCCACCCTC
TTGCACGACCTCATGTTCCTCCCCTGCCTCCTGAGTCTTTGCAGCGAAGA
GCAACAAGCTTACTGGGTTCCCTTAGCGCGAAGCAAGAAAGTGTTAGGAT
GCTATGCGCAGACGGAGATGGGGCATGGCAGTAACATTCAAGCCTTGCAA
ACGACAGCGACCTTTGATCCCGCAACCGATGAATTCGTCCTCGACACGCC
CACCATTCAGTCCTTCAAGTGGTGGCCTGGGACACTGGGCCGCACCGCCA
ACACCGCAATGGTCATCGCCCGTCTCCTGCTTCCTTCCTCCCCTCCTTTG
TCTCCTTCCACCTCCTACCAAGACCTGGGCATCCACAACTTTATCGTCCC
TCTACGTGACCTTCACACGCATGCGCTGCTCCCTGGCGTGGTGGCGCGGG
ACATAGGACCCAAGGTAGCCTTTGCGGGCATGGACAATGGCTGTCTAGAA
CTGCATTCTGTCAGAATTCCACGCGCAAATCTCGCGCAGCGGTTTGTGCG
TGTCTCAAGAGACGGGGTGTGGAGCCGGGTGGAAGGGACGCACCCCAAGG
CGGCTTACGTTACCATGATGCAGGTCCGTGCTATCATTGTCGTCCACTCT
GCCCGGGAGCTGAGCAAAGCTGCCACCATCGCCATTCGATATTCTGCCGT
GCGCCACCAAGGGTATGATGCCGACGATTCCGGCCCTGTGAAACGCGAGC
ATCAAATCCTTGACTACCCTTCACAGCAATACCGCCTCCTTCCCCTCCTT
GCCGCTTCAATTGGCTTCTTTTTCTGTGGACGTGCCGTGCAAGCCTTGCT
GGCGGAAACTGAACAAGCACTCTTGTTGGGGAAAAAAGGCCAAGCGGAAG
TAGGGCAGCAGATGGGGAAGGCCCATGCGTCGCTGGCAGGGTTGAAAAGT
CTATGTACGACGATCGCTGCCGAGGGGATTGAAGATTGTAGGAAATGTTG
CGGAGGACATGGTTATCTGGCTTGCTCGGGCCTGCCGGAGTTGTCAGGTA
TATCTTATTTTCTCTCTTTGTCTCCCTCTCTTCCTCCCTTCCTCCCTTTT
TTCGTTGTCTTCATTCGTTCCTTTACTCTCGTCTTTTCCTCCTTATCCTC
CTTGTGTCGCGCCCTTTATTGGCTCCCCCATCCCATCCTCTATATTTCAT
GTGCCCACTGCCGTCTAGCCCGACGCCCGTTTCTTTCATGCTCCCAAATC
CAGTGCCTCATCATTCCACTCTTTCTCTCCTTCTTTCCCTCCCTCTTTCC
CTCTCTTTCCCGCAGGCAATTTCCTCCAGCAATGCACGGTGGAGGGAGAT
AAATGGACGTCGCCCCAGAACTCGTTCAAGAACGACGCAATGCCTCCTTC
TCGCCCGCCTCCCTGACCCAGCTCGTTGACGGTGGCGCTGCCAAGGTCGA
GCGTCGACGCTGGCTGCGAAGCCTCATTCTAGCAGACCCCATTTTTAGCA
ATGAAGATGCCATCTACCTCAATCACACCGAGCGCTACAAACGTGCTCTG
GCGAAATGTGGTCGCTTGGACCAGTTGATCAATACTCACGGGCTGAGCGA
GGAGGATGGCGCTGTCCTTCGTTCTCTCGCCTCGGAGGATCTTCCCACCC
TCTTGCACGACCTCATGTTCCTCCCCTGCCTCCTGAGTCTTTGCAGCGAA
GAGCAACAAGCTTACTGGGTTCCCTTAGCGCGAAGCAAGAAAGTGTTAGG
ATGCTATGCGCAGACGGAGATGGGGCATGGCAGTAACATTCAAGCCTTGC
AAACGACAGCGACCTTTGATCCCGCAACCGATGAATTCGTCCTCGACACG
CCCACCATTCAGTCCTTCAAGTGGTGGCCTGGGACACTGGGCCGCACCGC
CAACACCGCAATGGTCATCGCCCGTCTCCTGCTTCCTTCCTCCCCTCCTT
TGTCTCCTTCCACCTCCTACCAAGACCTGGGCATCCACAACTTTATCGTC
CCTCTACGTGACCTTCACACGCATGCGCTGCTCCCTGGCGTGGTGGCGCG
GGACATAGGACCCAAGGTAGCCTTTGCGGGCATGGACAATGGCTGTCTAG
AACTGCATTCTGTCAGAATTCCACGCGCAAATCTCGCGCAGCGGTTTGTG
CGTGTCTCAAGAGACGGGGTGTGGAGCCGGGTGGAAGGGACGCACCCCAA
GGCGGCTTACGTTACCATGATGCAGGTCCGTGCTATCATTGTCGTCCACT
CTGCCCGGGAGCTGAGCAAAGCTGCCACCATCGCCATTCGATATTCTGCC
GTGCGCCACCAAGGGTATGATGCCGACGATTCCGGCCCTGTGAAACGCGA
GCATCAAATCCTTGACTACCCTTCACAGCAATACCGCCTCCTTCCCCTCC
TTGCCGCTTCAATTGGCTTCTTTTTCTGTGGACGTGCCGTGCAAGCCTTG
CTGGCGGAAACTGAACAAGCACTCTTGTTGGGGAAAAAAGGCCAAGCGGA
AGTAGGGCAGCAGATGGGGAAGGCCCATGCGTCGCTGGCAGGGTTGAAAA
GTCTATGTACGACGATCGCTGCCGAGGGGATTGAAGATTGTAGGAAATGT
TGCGGAGGACATGGTTATCTGGCTTGCTCGGGCCTGCCGGAGTTGTCAGG
TATATCTTATTTTCTCTCTTTGTCTCCCTCTCTTCCTCCCTTCCTCCCTT
TTTTCGTTGTCTTCATTCGTTCCTTTACTCTCGTCTTTTCCTCCTTATCC
TCCTTGTGTCGCGCCCTTTATTGGCTCCCCCATCCCATCCTCTATATTTC
ATGTGCCCACTGCCGTCTAGCCCGACGCCCGTTTCTTTCATGCTCCCAAA
TCCAGTGCCTCATCATTCCACTCTTTCTCTCCTTCTTTCCCTCCCTCTTT
CCCTCTCTTTCCCGCAGGCAATTTCCTCCAGCAATGCACGGTGGAGGGAG
ATAAATGGACGTCGCCCCAGAACTCGTTCAAGAACGACGCAATGCCTCCT
TCTCGCCCGCCTCCCTGACCCAGCTCGTTGACGGTGGCGCTGCCAAGGTC
GAGCGTCGACGCTGGCTGCGAAGCCTCATTCTAGCAGACCCCATTTTTAG
CAATGAAGATGCCATCTACCTCAATCACACCGAGCGCTACAAACGTGCTC
TGGCGAAATGTGGTCGCTTGGACCAGTTGATCAATACTCACGGGCTGAGC
GAGGAGGATGGCGCTGTCCTTCGTTCTCTCGCCTCGGAGGATCTTCCCAC
CCTCTTGCACGACCTCATGTTCCTCCCCTGCCTCCTGAGTCTTTGCAGCG
AAGAGCAACAAGCTTACTGGGTTCCCTTAGCGCGAAGCAAGAAAGTGTTA
GGATGCTATGCGCAGACGGAGATGGGGCATGGCAGTAACATTCAAGCCTT
GCAAACGACAGCGACCTTTGATCCCGCAACCGATGAATTCGTCCTCGACA
CGCCCACCATTCAGTCCTTCAAGTGGTGGCCTGGGACACTGGGCCGCACC
GCCAACACCGCAATGGTCATCGCCCGTCTCCTGCTTCCTTCCTCCCCTCC
TTTGTCTCCTTCCACCTCCTACCAAGACCTGGGCATCCACAACTTTATCG
TCCCTCTACGTGACCTTCACACGCATGCGCTGCTCCCTGGCGTGGTGGCG
CGGGACATAGGACCCAAGGTAGCCTTTGCGGGCATGGACAATGGCTGTCT
AGAACTGCATTCTGTCAGAATTCCACGCGCAAATCTCGCGCAGCGGTTTG
TGCGTGTCTCAAGAGACGGGGTGTGGAGCCGGGTGGAAGGGACGCACCCC
AAGGCGGCTTACGTTACCATGATGCAGGTCCGTGCTATCATTGTCGTCCA
CTCTGCCCGGGAGCTGAGCAAAGCTGCCACCATCGCCATTCGATATTCTG
CCGTGCGCCACCAAGGGTATGATGCCGACGATTCCGGCCCTGTGAAACGC
GAGCATCAAATCCTTGACTACCCTTCACAGCAATACCGCCTCCTTCCCCT
CCTTGCCGCTTCAATTGGCTTCTTTTTCTGTGGACGTGCCGTGCAAGCCT
TGCTGGCGGAAACTGAACAAGCACTCTTGTTGGGGAAAAAAGGCCAAGCG
GAAGTAGGGCAGCAGATGGGGAAGGCCCATGCGTCGCTGGCAGGGTTGAA
AAGTCTATGTACGACGATCGCTGCCGAGGGGATTGAAGATTGTAGGAAAT
GTTGCGGAGGACATGGTTATCTGGCTTGCTCGGGCCTGCCGGAGTTGTCA
GGTATATCTTATTTTCTCTCTTTGTCTCCCTCTCTTCCTCCCTTCCTCCC
TTTTTTCGTTGTCTTCATTCGTTCCTTTACTCTCGTCTTTTCCTCCTTAT
CCTCCTTGTGTCGCGCCCTTTATTGGCTCCCCCATCCCATCCTCTATATT
TCATGTGCCCACTGCCGTCTAGCCCGACGCCCGTTTCTTTCATGCTCCCA
AATCCAGTGCCTCATCATTCCACTCTTTCTCTCCTTCTTTCCCTCCCTCT
TTCCCTCTCTTTCCCGCAGGCAATTTCCTCCAGCAATGCACGGTGGAGGG
AGATAA back to top
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