jgi.p|Nanoce1779_2|594813, gene_6380 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594813
Unique Namegene_6380
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_15:495877..499059 +

Link to JBrowse

Properties
Property NameValue
TranscriptId594899
ProteinId594813
Product nameFormyl transferase
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:495877..499059 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004479methionyl-tRNA formyltransferase activity
GO:0016742hydroxymethyl-, formyl- and related transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0009058biosynthetic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL020ncniL020Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01630NO20G01630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594813mRNA_6380-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594813mRNA_6380Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|594813

>mRNA_6380-protein ID=mRNA_6380-protein|Name=jgi.p|Nanoce1779_2|594813|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MIAPRSASVASWMGTMLLLLLQSANAFQEPAFVAARRGGVGRRGVMGVAG
QTMRRRIGALRASSSPSSSPKRVIFLGTPDVAALSLSLLLTASKEGRGGN
FSIISVVTQPPAPSGRKLKLTPSPVQTLAESAGLPVLTPDKAKDPAFLST
LQALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRT
LQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGT
EALIQALPSVWDGTATPQEQDEEQATKANKITAAEAGICFEKESARTIHN
KVRGFAGWPGTWAWFELVEEEDGGKKNDEIVRLKIVTTRVVEQEGEGRKE
AGGRGVELVGGKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRG
RTLRWRPMPKKEVEEGVEGA*
back to top
Synonyms
Publications