jgi.p|Nanoce1779_2|594813, mRNA_6380 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594813
Unique Name	mRNA_6380
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3027
Alignment location	scaffold_15:495877..499059 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594899
Track	FilteredModels2
ProteinId	594813

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:495877..499059 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594813	gene_6380	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594813	mRNA_6380-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6380	CDS_6380	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:495877..499059+
coding sequence from alignment at scaffold_15:495877..499059+

mRNA sequence

>mRNA_6380 ID=mRNA_6380|Name=jgi.p|Nanoce1779_2|594813|organism=Nannochloropsis oceanica|type=mRNA|length=3027bp
GTGGAGAGATGGACATGCAACCGAGATCACAGAGGTTGCCCTCCTCATCT
GCTGCTCGCTTACGTGGGTCGTTCTCCCTTCATTTTAGCTTTCTATCTTT
CTACTGACTCCTTCCTCTTACACCTCTCCCCCTTCTGAAGTCTTCAACCA
CGTGGACCATCATACCAGATTGCAGCACAGCTCCTCACACCCTCTTTTTC
ATCGACAAAAATGCACCCTCTGCTACTATTCTCCCCCCTTCTCCTCCCCC
CACTCCTTTACGACGACTTTTTAACCGTCCCCACCTGCGCCGGCCGGATG
ACGCGCCCATTCAGCGTGTACCCCGTCTTCAAAACCTGCCCTACGCTCCC
TCCCTCCCTTCCTGCCTCTTCGTACTCGAATAGCGCATCGTGCAAGTGCG
GATCAAACGTGTCCCCTGGCTTGCCGAACTTCACAATCTTATTCGCTCCG
AACACCTTCTGAAGCTGCGTGTCCGTCATTGCCACCCCCTCCACCAACGT
CGCTAACAGCCCTCCTTCACGACCTCCCTCACTATTGTCGAGAATTTCTT
GAGGGACACTCTCGAGGGCACGACCGAGGTTGTCGGCCACGTCTAGCAGC
TGCTTGGCGAAGGACTGGAGGGCGAACTGTTTGGCGCTCTCCATGTCACG
GCGGGCAATGGTGCGGACGTTCTCCATTTCGGCAAGGGTGTAGAGAACCT
TGTCTTTCAGTTCCTTGTTTTCGGCGGTTAGTTTCTCTATGAGCTTGGTT
TGCTCGTCTTTTTCCTATGGTGAAGGGAAGCGAAGGAGGGGAGAGAAGCG
AAGAAGGGAAAGGGAGGAGGGAAGGGTGAGAGCGGCCTCAGGGACTCGAG
TGCTATTTGTCCAGGCTTGCCCCTTTACAGCATTCAGAGCGCGAAATAGT
GCTCAAAGTAGAAGGAATTGGGAGCGATAAGTAACTGTACCTCTTCTGTT
GCTACTGCGGCTGCTGCCTTGTGCCCCTCTGCTCCTGCCTTTTCGCCCTC
CGCTGCTTTGCCCTGCAATGGTTTGAGAAAGGAAAGAAACGCGAACAGAA
TCAGAGGAATTGACGATCACAATAAATAATCAGATTGCTGCTTCTCAAGC
ACTCCAATCTACGCACGTACGTTGCCCTCCCCTGCGCCTGTGCCCTGGCT
CATGAACGTGCGCCTACTGACACTGCTGATGCCTCTGGGGAAAGCCGCTG
TCCGAGACCCAAACACGCTCCGTGCCATCATCTCCGTGGACAGCAAAGGC
GTAGACTGCGACCATTGGGTGGCGACACTTATTGCGTTTGAGTAGGGGAA
GGAGGGAGTGTGAGGACGGTGCGTGGAAGAGTGAGACGGAAGGGAAGGAC
GGGGGGGTGGGGAAGAGGGGAGGAGGCTACTTACGCTGGCCGAGCAAAGG
ACTTCAGCCCATGTCCCACCCTACTGCAGGCGGACGTCAACATGGTCGAT
GATGGCGTGGTCACTGTGTTATGTGTGTTCACGGTACTCATGCGTTGGTA
AACGGGAATGGAGAGGAGGATGCTGACGATGCAGCTGTGAATACCATAGC
TGCATGTATGTCCTGACTCTGGCTGCAGCTTAGCCCTTGCAACAAAAGAA
GCCAAACTTAATCGTGTGTCCTACCCCAAAAACAACACATATTCACAGGG
GCAAGGACAAGGCCGTGTCCGCACAAGACGTCGAGGAGGGCAGGAGCTGA
GTGGCTGAATGATCGCACCTCGTAGTGCTTCAGTCGCCTCCTGGATGGGA
ACGATGCTGCTGCTTTTGCTCCAGAGCGCAAATGCCTTTCAAGAGCCCGC
ATTTGTTGCGGCACGACGAGGGGGAGTCGGCAGGCGTGGCGTGATGGGAG
TGGCAGGGCAAACGATGCGAAGGAGAATTGGAGCCTTGCGAGCCTCCTCC
TCCCCCTCCTCTTCCCCCAAACGCGTCATCTTTCTCGGCACACCGGATGT
CGCCGCCCTCTCACTCTCCCTCCTCCTCACGGCATCCAAAGAAGGCCGGG
GCGGCAACTTTAGTATCATTTCCGTGGTTACTCAACCCCCTGCACCTTCC
GGCCGCAAGCTCAAGCTTACGCCCTCCCCCGTTCAGACACTGGCGGAATC
CGCCGGCCTCCCCGTCCTCACACCCGACAAAGCCAAAGACCCCGCATTTC
TATCCACCCTCCAGGCGCTCCAACCAGACCTGTGTATCACTGCTGCCTAT
GGGAACTTTCTCCCTTCCTCCTTCCTCGCCCTTCCACGCTTTGGCACGCT
GAATATCCACCCATCCCTCCTCCCCAAATATAGAGGAGCTAGCCCGGTGC
AACGCACTTTACAAGCAGGCGATGCTATGACAGGCGTGTCTGTCTTATTT
ACTGAGCTGAAAATGGATGCCGGGCCGATTCTGAGGCAGGTCGGTCACCC
TTTAGAAGGGGAGGAGAAAGCACCGGAGTTACTCCGGGAACTGTTCGCGG
AAGGGACGGAGGCATTGATTCAGGCCTTACCCTCTGTCTGGGATGGCACT
GCCACTCCCCAAGAGCAGGATGAGGAACAGGCGACGAAAGCGAATAAAAT
AACAGCAGCAGAAGCGGGGATATGTTTTGAGAAGGAAAGTGCCAGGACGA
TCCATAATAAAGTAAGGGGCTTCGCTGGCTGGCCGGGCACTTGGGCCTGG
TTTGAGCTCGTCGAGGAGGAGGATGGAGGTAAGAAGAATGATGAGATAGT
ACGATTGAAGATTGTGACGACACGCGTTGTGGAGCAGGAAGGGGAGGGTC
GGAAGGAGGCGGGGGGAAGGGGAGTGGAGCTGGTGGGTGGAAAGACAGGA
TGTTTGAGGGTTGTGTGTGGGGACGAGAGTGTGCTGGATTTGCTGGAGGT
GCAGCCACCGGGAAAGAAGGTGATGGATAGTAAGAGTTATGCGAACGGGT
TGAGAGGGAGGACTTTACGGTGGAGGCCGATGCCGAAAAAGGAAGTGGAG
GAGGGAGTGGAGGGGGCATGAGGGATTTTGAATGAAACCGACTGCGAAAA
ATTATATCTTTGTCAACCAATCGTGAA

protein sequence of jgi.p|Nanoce1779_2|594813

>mRNA_6380-protein ID=mRNA_6380-protein|Name=jgi.p|Nanoce1779_2|594813|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MIAPRSASVASWMGTMLLLLLQSANAFQEPAFVAARRGGVGRRGVMGVAG
QTMRRRIGALRASSSPSSSPKRVIFLGTPDVAALSLSLLLTASKEGRGGN
FSIISVVTQPPAPSGRKLKLTPSPVQTLAESAGLPVLTPDKAKDPAFLST
LQALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRT
LQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGT
EALIQALPSVWDGTATPQEQDEEQATKANKITAAEAGICFEKESARTIHN
KVRGFAGWPGTWAWFELVEEEDGGKKNDEIVRLKIVTTRVVEQEGEGRKE
AGGRGVELVGGKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRG
RTLRWRPMPKKEVEEGVEGA*

mRNA from alignment at scaffold_15:495877..499059+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6380 ID=mRNA_6380|Name=jgi.p|Nanoce1779_2|594813|organism=Nannochloropsis oceanica|type=mRNA|length=3183bp|location=Sequence derived from alignment at scaffold_15:495877..499059+ (Nannochloropsis oceanica)
GTGGAGAGATGGACATGCAACCGAGATCACAGAGGTTGCCCTCCTCATCT
GCTGCTCGCTTACGTGGGTCGTTCTCCCTTCATTTTAGCTTTCTATCTTT
CTACTGACTCCTTCCTCTTACACCTCTCCCCCTTCTGAAGTCTTCAACCA
CGTGGACCATCATACCAGATTGCAGCACAGCTCCTCACACCCTCTTTTTC
ATCGACAAAAATGCACCCTCTGCTACTATTCTCCCCCCTTCTCCTCCCCC
CACTCCTTTACGACGACTTTTTAACCGTCCCCACCTGCGCCGGCCGGATG
ACGCGCCCATTCAGCGTGTACCCCGTCTTCAAAACCTGCCCTACGCTCCC
TCCCTCCCTTCCTGCCTCTTCGTACTCGAATAGCGCATCGTGCAAGTGCG
GATCAAACGTGTCCCCTGGCTTGCCGAACTTCACAATCTTATTCGCTCCG
AACACCTTCTGAAGCTGCGTGTCCGTCATTGCCACCCCCTCCACCAACGT
CGCTAACAGCCCTCCTTCACGACCTCCCTCACTATTGTCGAGAATTTCTT
GAGGGACACTCTCGAGGGCACGACCGAGGTTGTCGGCCACGTCTAGCAGC
TGCTTGGCGAAGGACTGGAGGGCGAACTGTTTGGCGCTCTCCATGTCACG
GCGGGCAATGGTGCGGACGTTCTCCATTTCGGCAAGGGTGTAGAGAACCT
TGTCTTTCAGTTCCTTGTTTTCGGCGGTTAGTTTCTCTATGAGCTTGGTT
TGCTCGTCTTTTTCCTATGGTGAAGGGAAGCGAAGGAGGGGAGAGAAGCG
AAGAAGGGAAAGGGAGGAGGGAAGGGTGAGAGCGGCCTCAGGGACTCGAG
TGCTATTTGTCCAGGCTTGCCCCTTTACAGCATTCAGAGCGCGAAATAGT
GCTCAAAGTAGAAGGAATTGGGAGCGATAAGTAACTGTACCTCTTCTGTT
GCTACTGCGGCTGCTGCCTTGTGCCCCTCTGCTCCTGCCTTTTCGCCCTC
CGCTGCTTTGCCCTGCAATGGTTTGAGAAAGGAAAGAAACGCGAACAGAA
TCAGAGGAATTGACGATCACAATAAATAATCAGATTGCTGCTTCTCAAGC
ACTCCAATCTACGCACGTACGTTGCCCTCCCCTGCGCCTGTGCCCTGGCT
CATGAACGTGCGCCTACTGACACTGCTGATGCCTCTGGGGAAAGCCGCTG
TCCGAGACCCAAACACGCTCCGTGCCATCATCTCCGTGGACAGCAAAGGC
GTAGACTGCGACCATTGGGTGGCGACACTTATTGCGTTTGAGTAGGGGAA
GGAGGGAGTGTGAGGACGGTGCGTGGAAGAGTGAGACGGAAGGGAAGGAC
GGGGGGGTGGGGAAGAGGGGAGGAGGCTACTTACGCTGGCCGAGCAAAGG
ACTTCAGCCCATGTCCCACCCTACTGCAGGCGGACGTCAACATGGTCGAT
GATGGCGTGGTCACTGTGTTATGTGTGTTCACGGTACTCATGCGTTGGTA
AACGGGAATGGAGAGGAGGATGCTGACGATGCAGCTGTGAATACCATAGC
TGCATGTATGTCCTGACTCTGGCTGCAGCTTAGCCCTTGCAACAAAAGAA
GCCAAACTTAATCGTGTGTCCTACCCCAAAAACAACACATATTCACAGGG
GCAAGGACAAGGCCGTGTCCGCACAAGACGTCGAGGAGGGCAGGAGCTGA
GTGGCTGAATGATCGCACCTCGTAGTGCTTCAGTCGCCTCCTGGATGGGA
ACGATGCTGCTGCTTTTGCTCCAGAGCGCAAATGCCTTTCAAGAGCCCGC
ATTTGTTGCGGCACGACGAGGGGGAGTCGGCAGGCGTGGCGTGATGGGAG
TGGCAGGGCAAACGATGCGAAGGAGAATTGGAGCCTTGCGAGGTATATGC
TTTACTTGCTCCTGGGAGGGAGGTTACACAAGGGGAGCAGTGAAAGTCTG
TCCACACTTGAGACTGCTGTATGGATATTGTCATCTCCTCTTTTGACCAT
CACCAGCGCACCTCTCTCATTTCTCCTCTCCACCACTTCACCCCACAGCC
TCCTCCTCCCCCTCCTCTTCCCCCAAACGCGTCATCTTTCTCGGCACACC
GGATGTCGCCGCCCTCTCACTCTCCCTCCTCCTCACGGCATCCAAAGAAG
GCCGGGGCGGCAACTTTAGTATCATTTCCGTGGTTACTCAACCCCCTGCA
CCTTCCGGCCGCAAGCTCAAGCTTACGCCCTCCCCCGTTCAGACACTGGC
GGAATCCGCCGGCCTCCCCGTCCTCACACCCGACAAAGCCAAAGACCCCG
CATTTCTATCCACCCTCCAGGCGCTCCAACCAGACCTGTGTATCACTGCT
GCCTATGGGAACTTTCTCCCTTCCTCCTTCCTCGCCCTTCCACGCTTTGG
CACGCTGAATATCCACCCATCCCTCCTCCCCAAATATAGAGGAGCTAGCC
CGGTGCAACGCACTTTACAAGCAGGCGATGCTATGACAGGCGTGTCTGTC
TTATTTACTGAGCTGAAAATGGATGCCGGGCCGATTCTGAGGCAGGTCGG
TCACCCTTTAGAAGGGGAGGAGAAAGCACCGGAGTTACTCCGGGAACTGT
TCGCGGAAGGGACGGAGGCATTGATTCAGGCCTTACCCTCTGTCTGGGAT
GGCACTGCCACTCCCCAAGAGCAGGATGAGGAACAGGCGACGAAAGCGAA
TAAAATAACAGCAGCAGAAGCGGGGATATGTTTTGAGAAGGAAAGTGCCA
GGACGATCCATAATAAAGTAAGGGGCTTCGCTGGCTGGCCGGGCACTTGG
GCCTGGTTTGAGCTCGTCGAGGAGGAGGATGGAGGTAAGAAGAATGATGA
GATAGTACGATTGAAGATTGTGACGACACGCGTTGTGGAGCAGGAAGGGG
AGGGTCGGAAGGAGGCGGGGGGAAGGGGAGTGGAGCTGGTGGGTGGAAAG
ACAGGATGTTTGAGGGTTGTGTGTGGGGACGAGAGTGTGCTGGATTTGCT
GGAGGTGCAGCCACCGGGAAAGAAGGTGATGGATAGTAAGAGTTATGCGA
ACGGGTTGAGAGGGAGGACTTTACGGTGGAGGCCGATGCCGAAAAAGGAA
GTGGAGGAGGGAGTGGAGGGGGCATGAGGGATTTTGAATGAAACCGACTG
CGAAAAATTATATCTTTGTCAACCAATCGTGAA

Coding sequence (CDS) from alignment at scaffold_15:495877..499059+

>mRNA_6380 ID=mRNA_6380|Name=jgi.p|Nanoce1779_2|594813|organism=Nannochloropsis oceanica|type=CDS|length=2526bp|location=Sequence derived from alignment at scaffold_15:495877..499059+ (Nannochloropsis oceanica)
ATGATCGCACCTCGTAGTGCTTCAGTCGCCTCCTGGATGGGAACGATGCT
GCTGCTTTTGCTCCAGAGCGCAAATGCCTTTCAAGAGCCCGCATTTGTTG
CGGCACGACGAGGGGGAGTCGGCAGGCGTGGCGTGATGGGAGTGGCAGGG
CAAACGATGCGAAGGAGAATTGGAGCCTTGCGAGCCTCCTCCTCCCCCTC
CTCTTCCCCCAAACGCGTCATCTTTCTCGGCACACCGGATGTCGCCGCCC
TCTCACTCTCCCTCCTCCTCACGGCATCCAAAGAAGGCCGGGGCGGCAAC
TTTAGTATCATTTCCGTGGTTACTCAACCCCCTGCACCTTCCGGCCGCAA
GCTCAAGCTTACGCCCTCCCCCGTTCAGACACTGGCGGAATCCGCCGGCC
TCCCCGTCCTCACACCCGACAAAGCCAAAGACCCCGCATTTCTATCCACC
CTCCAGGCGCTCCAACCAGACCTGTGTATCACTGCTGCCTATGGGAACTT
TCTCCCTTCCTCCTTCCTCGCCCTTCCACGCTTTGGCACGCTGAATATCC
ACCCATCCCTCCTCCCCAAATATAGAGGAGCTAGCCCGGTGCAACGCACT
TTACAAGCAGGCGATGCTATGACAGGCGTGTCTGTCTTATTTACTGAGCT
GAAAATGGATGCCGGGCCGATTCTGAGGCAGGTCGGTCACCCTTTAGAAG
GGGAGGAGAAAGCACCGGAGTTACTCCGGGAACTGTTCGCGGAAGGGACG
GAGGCATTGATTCAGGCCTTACCCTCTGTCTGGGATGGCACTGCCACTCC
CCAAGAGCAGGATGAGGAACAGGCGACGAAAGCGAATAAAATAACAGCAG
CAGAAGCGGGGATATGTTTTGAGAAGGAAAGTGCCAGGACGATCCATAAT
AAAGTAAGGGGCTTCGCTGGCTGGCCGGGCACTTGGGCCTGGTTTGAGCT
CGTCGAGGAGGAGGATGGAGGTAAGAAGAATGATGAGATAGTACGATTGA
AGATTGTGACGACACGCGTTGTGGAGCAGGAAGGGGAGGGTCGGAAGGAG
GCGGGGGGAAGGGGAGTGGAGCTGGTGGGTGGAAAGACAGGATGTTTGAG
GGTTGTGTGTGGGGACGAGAGTGTGCTGGATTTGCTGGAGGTGCAGCCAC
CGGGAAAGAAGGTGATGGATAGTAAGAGTTATGCGAACGGGTTGAGAGGG
AGGACTTTACGGTGGAGGCCGATGCCGAAAAAGGAAGTGGAGGAGGGAGT
GGAGGGGGCATGAATGATCGCACCTCGTAGTGCTTCAGTCGCCTCCTGGA
TGGGAACGATGCTGCTGCTTTTGCTCCAGAGCGCAAATGCCTTTCAAGAG
CCCGCATTTGTTGCGGCACGACGAGGGGGAGTCGGCAGGCGTGGCGTGAT
GGGAGTGGCAGGGCAAACGATGCGAAGGAGAATTGGAGCCTTGCGAGCCT
CCTCCTCCCCCTCCTCTTCCCCCAAACGCGTCATCTTTCTCGGCACACCG
GATGTCGCCGCCCTCTCACTCTCCCTCCTCCTCACGGCATCCAAAGAAGG
CCGGGGCGGCAACTTTAGTATCATTTCCGTGGTTACTCAACCCCCTGCAC
CTTCCGGCCGCAAGCTCAAGCTTACGCCCTCCCCCGTTCAGACACTGGCG
GAATCCGCCGGCCTCCCCGTCCTCACACCCGACAAAGCCAAAGACCCCGC
ATTTCTATCCACCCTCCAGGCGCTCCAACCAGACCTGTGTATCACTGCTG
CCTATGGGAACTTTCTCCCTTCCTCCTTCCTCGCCCTTCCACGCTTTGGC
ACGCTGAATATCCACCCATCCCTCCTCCCCAAATATAGAGGAGCTAGCCC
GGTGCAACGCACTTTACAAGCAGGCGATGCTATGACAGGCGTGTCTGTCT
TATTTACTGAGCTGAAAATGGATGCCGGGCCGATTCTGAGGCAGGTCGGT
CACCCTTTAGAAGGGGAGGAGAAAGCACCGGAGTTACTCCGGGAACTGTT
CGCGGAAGGGACGGAGGCATTGATTCAGGCCTTACCCTCTGTCTGGGATG
GCACTGCCACTCCCCAAGAGCAGGATGAGGAACAGGCGACGAAAGCGAAT
AAAATAACAGCAGCAGAAGCGGGGATATGTTTTGAGAAGGAAAGTGCCAG
GACGATCCATAATAAAGTAAGGGGCTTCGCTGGCTGGCCGGGCACTTGGG
CCTGGTTTGAGCTCGTCGAGGAGGAGGATGGAGGTAAGAAGAATGATGAG
ATAGTACGATTGAAGATTGTGACGACACGCGTTGTGGAGCAGGAAGGGGA
GGGTCGGAAGGAGGCGGGGGGAAGGGGAGTGGAGCTGGTGGGTGGAAAGA
CAGGATGTTTGAGGGTTGTGTGTGGGGACGAGAGTGTGCTGGATTTGCTG
GAGGTGCAGCCACCGGGAAAGAAGGTGATGGATAGTAAGAGTTATGCGAA
CGGGTTGAGAGGGAGGACTTTACGGTGGAGGCCGATGCCGAAAAAGGAAG
TGGAGGAGGGAGTGGAGGGGGCATGA

Synonyms

Publications