NO20G01630, NO20G01630 (gene) Nannochloropsis oceanica

Overview
NameNO20G01630
Unique NameNO20G01630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1725
Alignment locationchr20:498050..499774 +

Link to JBrowse

Properties
Property NameValue
DescriptionMethionyl-trna formyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:498050..499774 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016742hydroxymethyl-, formyl- and related transferase activity
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR036477Formyl_transf_N_sf
IPR011034Formyl_transferase_C-like
IPR002376Formyl_transf_N
IPR005793Formyl_trans_C
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO20G01630 vs. NCBI_GenBank
Match: EWM22092.1 (methionyl-trna formyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 519.6 bits (1337), Expect = 8.900e-144
Identity = 287/415 (69.16%), Postives = 323/415 (77.83%), Query Frame = 0
Query:    1 MIAPRSASVASWMGTMLLLLLQSANAFQEPAFVAARRGGVGRRGVMGVAGQTMRRRIGALRASSSLSSSPKRVIFLGTPDVAALSLSLLLTASKEGRGGNFSIISVVTQPPAPSGRKLKLTPSPVQTLAESAGLPVLTPDKAKDPAFLSTLQALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRTLQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGTEALIQALPSVWDGTATPQEQVEEQATKANKITAAEAGICFEKESARTIHNKVRGFAGWPGTWAWFELVE--EEEGGKKSDEIVRLKIVTTRVVEQEGEGRKEAG-GRGVELVGGKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRGRTLRWRPMPKKE 413
            ++A  SA        +  +L  ++ AF  P  +A RR G  +  +   AG    RR+G LRASS  S+  KRV+FLGTPDVAAL+LS LL ASK+GRGG F I+SVVTQPPAPSGRKLKLTPSPVQTLAES  +PVL PDKAKDP FLS L+ L PDLCITAAYGNFLPS FLA+PR+GTLNIHPSLLPKYRGASPVQRTLQAGDA+TGVSVLFTELKMDAGP+L QV +PL GEEKAPELL+ LF  GTEAL++ALPSVWDGTA   EQ EEQA++A KI A EA ICFE+ESA  +HNKVR FAGWPGTWA FE+ E  E+EGG K+   VRLKIVTTRV    GEG +  G GR V ++GGK G LRV CGD SVLD+LEVQPPGKKVMD KSYANGLRGRTLRWRP   KE
Sbjct:   13 VVAATSAPAYLLKVMLPFILFSTSKAFYTPIALAGRRLGAVQEVIGRNAGPAF-RRLGGLRASSK-SAGTKRVVFLGTPDVAALTLSRLLAASKDGRGGGFEIVSVVTQPPAPSGRKLKLTPSPVQTLAESEKVPVLCPDKAKDPIFLSALETLAPDLCITAAYGNFLPSKFLAIPRYGTLNIHPSLLPKYRGASPVQRTLQAGDAVTGVSVLFTELKMDAGPLLAQVPYPLRGEEKAPELLQTLFTAGTEALLEALPSVWDGTARLVEQQEEQASQAEKIRAEEAQICFERESALRVHNKVRAFAGWPGTWAVFEVAEEGEKEGGGKA---VRLKIVTTRV----GEGEEGVGAGRVVGVLGGKKGGLRVRCGDGSVLDILEVQPPGKKVMDCKSYANGLRGRTLRWRPQDAKE 418          
BLAST of NO20G01630 vs. NCBI_GenBank
Match: CBN80130.1 (methionyl-tRNA formyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 360.9 bits (925), Expect = 5.300e-96
Identity = 193/367 (52.59%), Postives = 246/367 (67.03%), Query Frame = 0
Query:   48 VAGQTMRRRIGALRASSSLSSS---PKRVIFLGTPDVAALSLSLLLTASKEGRGGNFSIISVVTQPPAPSGRKLKLTPSPVQTLAESAGLPVLTPDKAKDPAFLSTLQALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRTLQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGTEALIQALPSVWDGTATPQEQVEEQATKANKITAAEAGICFEKESARTIHNKVRGFAGWPGTWAWFELVEEEEGGKKSDEIVRLKIVTTRVVEQEGEGRKEAGGRGVEL------VGGKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRGRTLRW 406
            V   + RR +G+ + ++S+ ++    K+V+FLGTP++AA SL LLL AS++G+GG F ++  V+ PPA +GRK  L PS VQ LA+S G+ V+TP  A+D  FL+ L+ LQPDLCITAAYG FLP  FL +P+FGTLN+HPSLLP YRGASPVQR L+AGD  TGV+V FT LKMDAGP++RQ    L+G EKAPELL+ELF EGT+ LI+ LP VWD T     Q +  A KA KI+  EA  CF+  SA TIHNKVR FAGWPGTWA F   +E        E  ++K++TT V +    G    GG   E       V  K   L + C D SVL +LE+QP  KKVM +K++ANGLRG  +RW
Sbjct:   77 VVPTSTRRSLGSAKTTTSMDTANVERKKVVFLGTPEIAASSLGLLLEASRQGKGGGFDVVRAVSNPPARTGRKKVLQPSAVQALADSEGITVMTPGTARDEEFLAGLEELQPDLCITAAYGQFLPRRFLDIPKFGTLNVHPSLLPLYRGASPVQRCLEAGDTETGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTKQLIECLPGVWDNTVEKSPQDDAAAVKAAKISVDEARCCFKTTSATTIHNKVRAFAGWPGTWAMFSWGKE----GTDSEARKVKLITTAVADPAAAGDDADGGTIEETAVAERQVVMKGDALELTCSDGSVLRVLELQPLNKKVMSAKAFANGLRGDEMRW 439          
BLAST of NO20G01630 vs. NCBI_GenBank
Match: XP_005760159.1 (hypothetical protein EMIHUDRAFT_68433 [Emiliania huxleyi CCMP1516] >EOD07730.1 hypothetical protein EMIHUDRAFT_68433 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 339.0 bits (868), Expect = 2.200e-89
Identity = 190/361 (52.63%), Postives = 242/361 (67.04%), Query Frame = 0
Query:   61 RASSSLSSSPKRVIFLGTPDVAALSLSLLLTASKEGRGGNFSIISVVTQPPAPSGRKLKLTPSPVQTLAESAGLPVLTPDKAKDPAFLSTLQALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRTLQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGTE------ALIQALPSVWDGTATPQ--EQVEEQATKANKITAAEAGICFEKESARTIHNKVRGFAGWPGTWAWFELVEEEEGGKKSDEIVRLKIVTTRV--------VEQEGEGRKEAGGRGVELVGGKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRGRTLRW 406
            R   ++S++ +RV+FLGTP VAA SL LLL AS +G    F + +VV+QPPA SGRK+KLT SPVQTLAE+ G+ +LTP  AK+ AFL+ L  LQPDLCITAAYG FLP  FL +PRFGTLN+HPSLLP YRGA+P+QR L+AGDA+ GVSV FT LKMDAGP+LRQ   PL G+E+ P LL ELF  GTE       L+ ALPSVWDG+   Q   Q + +ATKA K++ A+A +  E+ SA   HNKVR FAGWPGTW    +     GG    E +R+K++ TR+        +    +      GR V L  G  G LR+VCGD S+L++L +  PGKK +D++++ NGL GR   W
Sbjct:   27 RCLVTMSAAKRRVVFLGTPAVAARSLELLLDASAQGXXXXFEVAAVVSQPPARSGRKMKLTASPVQTLAEARGIELLTPASAKEEAFLARLDELQPDLCITAAYGCFLPQRFLDIPRFGTLNVHPSLLPLYRGAAPLQRCLEAGDAVAGVSVAFTVLKMDAGPLLRQEERPLVGDEQEPPLLLELFERGTEPLEAEDLLLDALPSVWDGSCAGQLAPQEDARATKAAKLSTADAELRLEQLSASEAHNKVRAFAGWPGTWTRISI-----GGA---EPIRVKLLQTRLGAAARSRHLSPPLQSSSRPTGRQVALAAG-GGALRLVCGDGSLLEVLRLTLPGKKPVDARAFWNGLNGRRAEW 378          
BLAST of NO20G01630 vs. NCBI_GenBank
Match: CEL99145.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 330.9 bits (847), Expect = 5.900e-87
Identity = 182/407 (44.72%), Postives = 251/407 (61.67%), Query Frame = 0
Query:    6 SASVASWMGTMLLLLLQSANAFQEPAFVAARRGGVGRRGVMGVAGQTMRRRIGALRASSSLSSSPKRVIFLGTPDVAALSLSLLLTASKEGRGGNFSIISVVTQPPAPSGRKLKLTPSPVQTLAESAGLPVLTPDKAKDPAFLSTLQALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRTLQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGTEALIQALPSVWDGTATPQEQVEEQATKANKITAAEAGICFEKESARTIHNKVRGFAGWPGTWAWFELV--EEEEGGKKSDEIVRLKIVTTRVVEQEGEGRKEAGGRGV-----ELVGGKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRGRTLRW 406
            SAS   +    L ++  SA    +P     +  G  R  V  +A  +     G +R         ++V+FLGTPDVAAL L  +  A++E   G F ++ VVT PPAP GRK  + PSPVQ  AE  GLPV  PDK  D AFL+ ++AL PDLCITAAYG FLP  FL +P +GTLNIHPSLLPKYRGA+PVQR L+AG+A+TGVSV+ T LKMDAGP+L+Q+ +PL G+E  P+LL  LF  GT+AL+  LPSVW   A  Q Q E  ATKA K+TA E  + F +E+A + HNK+R F+GWPG W+ F L    +++   +  E +++K++++R++        +            L+  +   L++VC D S L + ++QP  +K M +K++ NGLRGR +RW
Sbjct:    6 SASALLYCVVTLTVIPSSAFHLVQPPPFYLKAAGTARSRVSSLASASTEGAEGVVR---------RKVVFLGTPDVAALCLQRIHKAAQEDSSG-FDLMGVVTNPPAPVGRKRTVVPSPVQAYAEENGLPVWAPDKPSDEAFLNEMEALSPDLCITAAYGGFLPQRFLDIPEYGTLNIHPSLLPKYRGAAPVQRALEAGEAVTGVSVVRTVLKMDAGPVLKQIEYPLTGDETCPQLLHTLFELGTDALLDLLPSVWRREAPAQPQDESLATKARKLTADEGELRFNRETAASAHNKIRAFSGWPGCWSEFTLTSGSDDDAPPQDTETLKMKLLSSRLLRGGPSSASDGNASSAPPSADRLIDLQGDALKIVCFDGSELGITQLQPQSRKAMGAKAFWNGLRGRLVRW 402          
BLAST of NO20G01630 vs. NCBI_GenBank
Match: XP_005715223.1 (unnamed protein product [Chondrus crispus] >CDF35404.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 322.8 bits (826), Expect = 1.600e-84
Identity = 192/370 (51.89%), Postives = 244/370 (65.95%), Query Frame = 0
Query:   43 RGVMGVAGQTMRRRIGALRASSSLSSSPKRVIFLGTPDVAALSLSLLLTASKEGRGGNFSIISVVTQPPAPSGRKLKLTPSPVQTLAESAGL-PVLTPDKAKDPAFLSTLQALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRTLQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGTEALIQALPSVWDGTATPQEQVEEQATKANKITAAEAGICFEKESARTIHNKVRGFAGWPGTWAWFELVEEEEGGKKSDEIVRLKIVTTRVVEQEGEGRKEAGGRGVELVG--GKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRGRTLRWRPMP 410
            R + G   +++++R+  L   S+ S+  KRV+FLGTP VAA +L  +  A+ +    +FSII VVTQPPA  GRK  LT SPV TLAE   +  ++TP  AKDP FL  L++L PDLCITAAYGNFLP +FL +P FGTLNIHPSLLP++RGA+PV R L+AG   TGVS+L T LKMDAGP+L Q    L+G+E+ PELL ELFA G EAL+  LPSVWDGTA    Q  + AT A K++  EA + F  E+A  IHNKVRGFAGWPGTW  F L     G     + VRLK++ T V+ QEG         GV  V       CL V C D S + +L+VQPPGKK MD++S+ NGLRG+++  + +P
Sbjct:   22 RTLSGSHKRSVQKRVRFL--CSTTSNDKKRVVFLGTPPVAARALKTINIAALK-PDSSFSIIGVVTQPPALVGRKRVLTNSPVHTLAEELSISTIMTPASAKDPGFLDQLRSLAPDLCITAAYGNFLPKAFLDIPPFGTLNIHPSLLPEFRGAAPVPRALEAGVQTTGVSILLTILKMDAGPVLAQRIRELKGDEQGPELLEELFASGCEALLDVLPSVWDGTAQHIAQDHDAATHAAKLSKDEARLSF-TENACIIHNKVRGFAGWPGTWGDFVL----RGTDGERQEVRLKVLETVVLRQEG-----GMCLGVHDVSFDEDNNCLAVTCDDGSKIGVLQVQPPGKKGMDARSFWNGLRGKSVGRKRVP 378          
BLAST of NO20G01630 vs. NCBI_GenBank
Match: EJK74796.1 (hypothetical protein THAOC_03498, partial [Thalassiosira oceanica])

HSP 1 Score: 300.1 bits (767), Expect = 1.100e-77
Identity = 167/339 (49.26%), Postives = 226/339 (66.67%), Query Frame = 0
Query:   75 FLGTPDVAALSLSLLLTASKEGRGGNFSIISVVTQPPAPSGRKLKLTPSPVQTLAESAGLPVLTPDKAKDPAFLSTL-QALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRTLQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGTEALIQALPSVWDG-----TATPQEQVEEQATKANKITAAEAGICFEKESARTIHNKVRGFAGWPGTWAWFELVEEEEGGKKSDEIVRLKIVTTRVVEQEGEGRKEAGGRGVELVGGKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRGRTLRWRP 408
            FLGTP+VAA SL  +   S    G  + ++ VVTQPP    RK K  PSPV  +AE  G+P+L PDKA+D  FL TL Q ++PDLCITAAYG +LP  FLALP+FGTLNIHPSLLP++RG+SPVQR+L+AGD   GVSVLFT  +MDAGPI+ Q  H ++ +E+A  LL +LF  GT +L++A+P V DG     TAT Q+  E    +A  I ++E  +   K SAR  HN+VRGF+ WPGT+ +F++      G  + E  ++K++ +RV+++  E         +E+   K   LR++C D SVL++L VQP  KKVMD+KS+ NGL+GRT+RW P
Sbjct:  334 FLGTPEVAATSLKTIYEESLSS-GCPYEVVGVVTQPPKRRKRKGKEIPSPVGYMAEELGIPILCPDKARDKEFLDTLEQEVKPDLCITAAYGQYLPKRFLALPKFGTLNIHPSLLPRWRGSSPVQRSLEAGDNPVGVSVLFTVSRMDAGPIVAQEEHNIDDDEQATTLLPDLFKIGTRSLMEAIPKVIDGEISIETATVQD--ESLVAEAGMIDSSEGQLWPTKMSARECHNRVRGFSMWPGTFLFFQI------GDDTSEPTKVKVIESRVLDETAEATDI-----IEIGPKKGDGLRLICSDGSVLEMLRVQPITKKVMDAKSFVNGLQGRTVRWLP 658          
BLAST of NO20G01630 vs. NCBI_GenBank
Match: GAQ88770.1 (methionyl-tRNA formyltransferase [Klebsormidium nitens])

HSP 1 Score: 298.1 bits (762), Expect = 4.200e-77
Identity = 179/347 (51.59%), Postives = 224/347 (64.55%), Query Frame = 0
Query:   63 SSSLSSSPKRVIFLGTPDVAALSLSLLL-TASKEGRGGNFSIISVVTQPPAPSGRKLKLTPSPVQTLAESAGLP---VLTPDKAKDPAFLSTLQALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRTLQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGTEALIQALPSVWDGTATPQ--EQVEEQATKANKITAAEAGICFEKESARTIHNKVRGFAGWPGTWAWFELVEEEEGGKKSDEIVRLKIVTTRVVEQEGEGRKEAGGRGVELVGGKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRGRTL 404
            S  L  + +RV+FLGTP+VAA  L  LL  A+KE     F I +VV+QP A  GR  KL PS V  LA  +GLP   +L PD A++ AFL  L  L PDLC+TAAYGN LP+ FLA+PR GTLNIHPSLLP YRGASPVQR ++AG+ +TGV+V FT   MDAGP+L Q    ++   KAPELL  LF  GT+ L++ LPSV+DGTA  +  EQ   + T+A K+   E  + FE + A  +HNKVR FAGWPGT A F +      G +  E V +K++TTRVVE EG     A G   E+   KTG LRV C D S+L++ E+QPP KK M  + + NGLRGR L
Sbjct:  132 SGQLEGAKRRVVFLGTPEVAAGVLRRLLEEAAKE--NSLFEITAVVSQPAAKQGRGRKLLPSSVSALALESGLPEDRLLCPDTAREEAFLERLSDLAPDLCVTAAYGNILPNKFLAIPRCGTLNIHPSLLPLYRGASPVQRAIEAGEKVTGVTVAFTVRAMDAGPVLAQEEVEVDPNIKAPELLEYLFRRGTDLLLRNLPSVFDGTAAERATEQDHAKKTEAPKVRIEEGNLDFE-QPASVLHNKVRAFAGWPGTKATFYI---RSDGSEESEPVTVKVITTRVVEGEG-----AEGDSKEVTLSKTG-LRVTCVDGSILEIQELQPPSKKPMRGRDFWNGLRGRRL 466          
BLAST of NO20G01630 vs. NCBI_GenBank
Match: XP_002508072.1 (predicted protein, partial [Micromonas commoda] >ACO69330.1 predicted protein, partial [Micromonas commoda])

HSP 1 Score: 297.7 bits (761), Expect = 5.500e-77
Identity = 174/350 (49.71%), Postives = 227/350 (64.86%), Query Frame = 0
Query:   67 SSSPKRVIFLGTPDVAALSLSLLLTASKEGRGGNFSIISVVTQPPAPSGRKLKLTPSPVQTLAESA----GLP---VLTPDKAKDPAFLSTLQALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRTLQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGTEALIQALPSVWDG-----TATPQEQVEEQATKANKITAAEAGICFEKESARTIHNKVRGFAGWPGTWAWFELVEEEEGGKKSDEIVRLKIVTTRVVEQEGEGRKEAGGRG-VELVGGKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRGRTL 404
            S   K+++FLGTP+VAA +L  +L A+ E     F + +VV+QP  P                  A    G+P   VL P KA +P FL  L+ ++PDL +TAAYGNFLP  FL +PR GTLNIHPSLLP++RGA+PVQR L+ GDA+TGVSV +T LKMDAGP+LR+V H L G+EK  ELL ELFA G +ALI+ALP VWDG     TATPQ +  + A +A K +  EA + F  ++ART+HNKVRGFAGWPGT A FE+   ++GG +   +V +KI+TT+VV     G++     G VEL       +RV CG    L++LE+QPPGKK M +  YANG++G TL
Sbjct:    3 SGDKKKLVFLGTPEVAASALEAILDAA-EAPNAAFEVHAVVSQPGRPXXXXXXXXXXXXXXXXXEAAMRRGIPEDMVLCPVKANEPDFLQRLRDMEPDLMVTAAYGNFLPQKFLDIPRLGTLNIHPSLLPQFRGAAPVQRCLERGDAVTGVSVAYTVLKMDAGPVLRRVEHELNGDEKHDELLPELFATGAKALIEALPRVWDGTESFDTATPQAEYGD-ACEAPKTSPEEARMDFMGQNARTLHNKVRGFAGWPGTKAKFEV--RKDGGDEG-TVVEVKIITTKVVTDSEAGKEAKAANGAVELT---KNSMRVPCGGGDWLEVLELQPPGKKAMKAGDYANGMKGSTL 344          
BLAST of NO20G01630 vs. NCBI_GenBank
Match: XP_005846977.1 (hypothetical protein CHLNCDRAFT_48904 [Chlorella variabilis] >EFN54875.1 hypothetical protein CHLNCDRAFT_48904 [Chlorella variabilis])

HSP 1 Score: 293.9 bits (751), Expect = 8.000e-76
Identity = 172/340 (50.59%), Postives = 219/340 (64.41%), Query Frame = 0
Query:   76 LGTPDVAALSLSLLLTASKEGRGGNFSIISVVTQPPAPSGRKLKLT--PSPVQTLAESAGLP---VLTPDKAKDPAFLSTLQALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRTLQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGTEALIQALPSVWDGTA--TPQEQVEEQATKANKITAAEAGICFEKESARTIHNKVRGFAGWPGTWAWFELVEEEEGGKKSDEIVRLKIVTTRVVEQEGEGRKEAGGRGVELVGGKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRGRTLRWRPM 409
            + TP VAAL L  LL A+ +    +F + +VVTQPP P+GR  +    PSPVQ LAE AGLP   +L P++  D  FL+ L+ L PDLC+TAAYGN+LPSSFLA+P  GTLNIHPSLLP+YRGA+PVQR+LQ G  +TGV+VL+T   MDAGPIL Q   P++ + +APELL  LF  GT+ L+  L +VW G      Q Q E  AT A K+   EA + F  + A+  HNKVRGFAGWPGT+A F+  + + GG      V LKIV TRV +       E  G     V      L + CGD SVL +LE+Q PGK+VM +K + NGL+GRTL W+P+
Sbjct:    1 MSTPQVAALVLKRLLAAAAQ-PDASFEVAAVVTQPPRPTGRGNRKVPQPSPVQVLAEEAGLPAGAILAPERPGDAEFLAALRQLAPDLCVTAAYGNYLPSSFLAVPPHGTLNIHPSLLPRYRGAAPVQRSLQDGVPITGVTVLYTVRAMDAGPILAQQKMPVDPDIQAPELLNRLFELGTDLLVDNLEAVWAGMGQLAAQPQDEAAATHAAKLQRHEAVLDF-SQPAQACHNKVRGFAGWPGTFATFQ--QRDAGGGGDAGHVELKIVRTRVAQP-----SEWSGSSEREVAVGRDALFIRCGDGSVLQVLELQAPGKRVMAAKDFVNGLKGRTLVWQPV 331          
BLAST of NO20G01630 vs. NCBI_GenBank
Match: XP_001422565.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABP00882.1 predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 288.5 bits (737), Expect = 3.300e-74
Identity = 171/351 (48.72%), Postives = 228/351 (64.96%), Query Frame = 0
Query:   61 RASSSLSSSPKRVIFLGTPDVAALSLSLLLTASKEGRGGNFSIISVVTQPPAPSGRKLK---LTPSPVQTLAESAGLP---VLTPDKAKDPAFLSTLQALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRTLQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGTEALIQALPSVWDGTATPQ--EQVEEQATKANKITAAEAGICFEKESARTIHNKVRGFAGWPGTWAWFELVEEEEGGKKSDEIVRLKIVTTRVVEQEGEGRKEAGGRGVELVGGKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRGRTL 404
            R  +  ++  +RV+FLGTP+ A   L+ +L A+ EGR   F + +VV+QP  P GR  K     PSPV  LA   G+    VL P+KA +  FL  L+AL  DL +TAAYGNFLP  FL +P+ GTLNIHPSLLP++RGA+PVQR L++G + TGVSV +T LKMDAGP+LRQV  PL+G+EKAP+LL ELF  G  AL++ LPSV+ G A  +   Q EE  + A K++  E  + F K+SA   HNKVR FAGWPGT A  ++  +  G ++S E+V LKI+TTRV     EG ++A    VE+       LRV C     L++LEVQPPGKK M + ++ NG++G T+
Sbjct:   44 REDADGATRKRRVVFLGTPECAKEVLARVLDAA-EGRESAFEVAAVVSQPGRPRGRGRKSDEAAPSPVAELALRRGMAEDRVLCPEKANEEWFLDALRALDVDLAVTAAYGNFLPQKFLDIPKLGTLNIHPSLLPQWRGAAPVQRALESGQSETGVSVAYTVLKMDAGPVLRQVTRPLKGDEKAPDLLTELFETGVGALLEELPSVFAGDAAARAVPQSEETLSHAAKVSPEEGELDFTKQSALECHNKVRAFAGWPGTKATLKI--KANGDEESKEVV-LKIITTRV---SAEGDEKAANGQVEVT---KKLLRVPCAGGGWLEVLEVQPPGKKAMPANAFINGIKGSTV 384          
The following BLAST results are available for this feature:
BLAST of NO20G01630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22092.18.900e-14469.16methionyl-trna formyltransferase [Nannochloropsis ... [more]
CBN80130.15.300e-9652.59methionyl-tRNA formyltransferase [Ectocarpus silic... [more]
XP_005760159.12.200e-8952.63hypothetical protein EMIHUDRAFT_68433 [Emiliania h... [more]
CEL99145.15.900e-8744.72unnamed protein product [Vitrella brassicaformis C... [more]
XP_005715223.11.600e-8451.89unnamed protein product [Chondrus crispus] >CDF354... [more]
EJK74796.11.100e-7749.26hypothetical protein THAOC_03498, partial [Thalass... [more]
GAQ88770.14.200e-7751.59methionyl-tRNA formyltransferase [Klebsormidium ni... [more]
XP_002508072.15.500e-7749.71predicted protein, partial [Micromonas commoda] >A... [more]
XP_005846977.18.000e-7650.59hypothetical protein CHLNCDRAFT_48904 [Chlorella v... [more]
XP_001422565.13.300e-7448.72predicted protein [Ostreococcus lucimarinus CCE990... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002695NSK002695Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01630.1NO20G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594813gene_6380Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01630.1NO20G01630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01630 ID=NO20G01630|Name=NO20G01630|organism=Nannochloropsis oceanica|type=gene|length=1725bp
TGGTCACTGTGTTATGTGTGTTCACGGTACTCATGCGTTGGTAAACGGGA
ATGGAGAGGAGGATGCTGACGATGCAGCTGTGAATACCATAGCTGCATGT
ATGTCCTGACTCTGGCTGCAGCTTAGCCCTTGCAACAAAAGAAGCCAAAC
TTAATCGTGTGTCCTACCCCAAAAACAACACATATTCACAGGGGCAAGGA
CAAGGCCGTGTCCGCACAAGACGTCGAGGAGGGCAGGAGCTGAGTGGCTG
AATGATCGCACCTCGTAGTGCTTCAGTCGCCTCCTGGATGGGAACGATGC
TGCTGCTTTTGCTCCAGAGCGCAAATGCCTTTCAAGAGCCCGCATTTGTT
GCGGCACGACGAGGGGGAGTCGGCAGGCGTGGCGTGATGGGAGTGGCAGG
GCAAACGATGCGAAGGAGAATTGGAGCCTTGCGAGgtatatgctttactt
gctcctgggagggaggttacaaggggagcagtgaaagtctgtccacactt
gagactgctgtatggatattgtcatctcctcttttgaccatcaccagcgc
acctctctcatttctcctctccaccacttcaccccacagCCTCCTCCTCC
CTATCCTCTTCCCCCAAACGCGTCATCTTTCTCGGCACACCGGATGTCGC
CGCCCTCTCACTCTCCCTCCTCCTCACGGCATCCAAAGAAGGCCGGGGCG
GCAACTTTAGTATCATTTCCGTGGTTACTCAACCCCCTGCACCTTCCGGC
CGCAAGCTCAAGCTTACGCCCTCCCCCGTTCAGACACTGGCGGAATCCGC
CGGCCTCCCCGTCCTCACACCCGACAAAGCCAAAGACCCCGCATTTCTAT
CCACCCTCCAGGCGCTCCAACCAGACCTGTGTATCACTGCTGCCTATGGG
AACTTTCTCCCTTCCTCCTTCCTCGCCCTTCCACGCTTTGGCACGCTGAA
TATCCACCCATCCCTCCTCCCCAAATATAGAGGAGCTAGCCCGGTGCAAC
GCACTTTACAAGCAGGCGATGCTATGACAGGCGTGTCTGTCTTATTTACT
GAGCTGAAAATGGATGCCGGGCCGATTCTGAGGCAGGTCGGTCACCCTTT
AGAAGGGGAGGAGAAAGCACCGGAGTTACTCCGGGAACTGTTTGCGGAAG
GGACGGAGGCATTGATTCAGGCCTTACCCTCTGTCTGGGATGGCACTGCC
ACTCCCCAAGAGCAGGTTGAGGAACAGGCGACGAAAGCGAATAAAATAAC
AGCAGCAGAAGCGGGGATATGTTTTGAGAAGGAAAGTGCCAGGACGATCC
ATAATAAAGTAAGGGGCTTCGCTGGCTGGCCGGGCACTTGGGCCTGGTTT
GAGCTCGTCGAGGAGGAGGAGGGAGGTAAGAAGAGTGATGAGATAGTACG
ATTGAAGATTGTGACGACACGCGTTGTGGAGCAGGAAGGGGAGGGTCGGA
AGGAGGCGGGGGGAAGGGGAGTGGAGCTGGTGGGTGGAAAGACAGGATGT
TTGAGGGTTGTGTGTGGGGACGAGAGTGTGCTGGATTTGCTGGAGGTGCA
GCCACCGGGAAAGAAGGTGATGGATAGTAAGAGTTATGCGAACGGGTTGA
GAGGGAGGACTTTACGGTGGAGGCCGATGCCGAAAAAGGAAGTGGAGGAG
GGAGTGGAGGGGGCATGAGGGATTTTGAATGAAACCGACTGCGAAAAATT
ATATCTTTGTCAACCAATCGTGAAC
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protein sequence of NO20G01630.1

>NO20G01630.1-protein ID=NO20G01630.1-protein|Name=NO20G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MIAPRSASVASWMGTMLLLLLQSANAFQEPAFVAARRGGVGRRGVMGVAG
QTMRRRIGALRASSSLSSSPKRVIFLGTPDVAALSLSLLLTASKEGRGGN
FSIISVVTQPPAPSGRKLKLTPSPVQTLAESAGLPVLTPDKAKDPAFLST
LQALQPDLCITAAYGNFLPSSFLALPRFGTLNIHPSLLPKYRGASPVQRT
LQAGDAMTGVSVLFTELKMDAGPILRQVGHPLEGEEKAPELLRELFAEGT
EALIQALPSVWDGTATPQEQVEEQATKANKITAAEAGICFEKESARTIHN
KVRGFAGWPGTWAWFELVEEEEGGKKSDEIVRLKIVTTRVVEQEGEGRKE
AGGRGVELVGGKTGCLRVVCGDESVLDLLEVQPPGKKVMDSKSYANGLRG
RTLRWRPMPKKEVEEGVEGA*
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Synonyms
Publications