jgi.p|Nanoce1779_2|543886, gene_6356 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|543886
Unique Namegene_6356
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_15:424379..426589 -

Link to JBrowse

Properties
Property NameValue
TranscriptId543972
ProteinId543886
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:424379..426589 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004197cysteine-type endopeptidase activity
GO:0008234cysteine-type peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL020ncniL020Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01400NO20G01400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|543886mRNA_6356-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|543886mRNA_6356Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|543886

>mRNA_6356-protein ID=mRNA_6356-protein|Name=jgi.p|Nanoce1779_2|543886|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MPLLVLFLLLPVLCRGWGAVVAETHMWERYERYVREFGKTFGSLAEKETA
FQHFVQSDNYLQNFPRSPSTLSESSSPSSSSSSSSSFLPTFTVKHSYFSD
WSPEQIQTYFSSSFSWTSFLGTAKKDKGEGWVEDENEDKHVMKDSSSSNR
GSSMGPGMEHSDLSKGKKSKYHDGLQSAGATTASATTFDDPSFLYRPVSA
LSHLRPLPSSPPPGRSSLPSQLDWSIASLNPLGRSVVSPPINQGHCGGCW
SIVSASVVESAVAIATHAPLTPLSAQELLDCDTSWNAGCMGGNPIESFGW
VRKHGLASAASYPYHGQQQQCQLREVDSVSSIKGYKILRACDEDGIMKAL
AIQPVAVGVAGQKRSFLFYSGGVYDDEIEGGREGGTVVLNHALVVVGYGR
DEKTGLPYWRCKNSWGKEWGEGGYVRIRRREGRSEGRGDPGVCGMALAPS
VPVGAYGGNVTAWLQARRREEGGRKYQKKGVGDKGGGGGEDGGGTTDPSS
IDDDGPFASLLPEWVQRVLMGVGGSMLLVLCAVYFYARPVDSSTPPTTAP
TAATAAAAAGATTATGQGYQRVWNRRGMRGREEVGEEAALGDGGGEESKY
GAV*
back to top
Synonyms
Publications