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Properties
| Property Name | Value |
|---|
| TranscriptId | 543972 |
| Track | FilteredModels2 |
| ProteinId | 543886 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:424379..426589 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6356 ID=mRNA_6356|Name=jgi.p|Nanoce1779_2|543886|organism=Nannochloropsis oceanica|type=mRNA|length=2072bp
ACAGGCTCGGGGTGGAAGAGGGGGAATCGAAGAAGGAGGAAGGAGGACCC
AGAGCCTTCAACCCCCCCTCTACAAATGCCGCTCCTCGTCCTCTTCCTGC
TGCTGCCCGTCCTCTGCCGTGGTTGGGGAGCAGTTGTCGCTGAGACGCAT
ATGTGGGAGCGCTACGAGCGCTATGTGAGGGAATTTGGCAAAACATTTGG
ATCGCTTGCCGAGAAAGAGACAGCATTCCAGCATTTTGTACAGTCCGACA
ACTACTTGCAGAACTTCCCGCGCTCTCCCTCCACCCTATCCGAGTCATCC
TCACCCTCATCCTCCTCCTCCTCCTCCTCCTCCTTTCTTCCCACCTTCAC
CGTCAAGCACTCATACTTCAGCGATTGGAGTCCAGAGCAAATCCAGACAT
ATTTTTCCTCGTCATTTTCATGGACTTCTTTCCTGGGCACAGCCAAGAAG
GACAAGGGGGAGGGATGGGTCGAGGACGAGAACGAGGATAAGCACGTAAT
GAAGGACAGCAGTAGCAGCAACAGGGGCAGCAGCATGGGCCCAGGTATGG
AGCACTCTGATTTGTCAAAGGGTAAGAAGAGTAAATACCATGATGGGTTA
CAGTCAGCAGGAGCGACAACAGCATCAGCAACCACCTTCGACGATCCCTC
CTTCCTCTACCGCCCCGTCTCCGCCCTCTCCCACCTGCGGCCCCTCCCTT
CGTCCCCCCCTCCTGGCAGATCCTCCCTCCCCTCGCAACTAGACTGGAGC
ATCGCCAGCCTCAACCCTCTAGGTCGTTCCGTGGTGTCCCCTCCTATAAA
TCAGGGACATTGTGGGGGGTGCTGGTCGATCGTCAGTGCGTCCGTCGTGG
AGTCAGCTGTCGCCATTGCTACGCATGCGCCACTCACCCCCCTTTCCGCC
CAAGAGCTCCTTGATTGTGATACAAGCTGGAATGCGGGCTGTATGGGGGG
TAACCCTATTGAGTCCTTCGGGTGGGTGAGAAAGCATGGGTTAGCATCAG
CGGCCTCTTACCCTTACCACGGACAGCAGCAACAGTGTCAGCTGCGGGAA
GTAGACAGTGTGAGCTCGATAAAGGGATACAAAATTCTCCGGGCCTGCGA
TGAGGATGGAATAATGAAAGCGCTCGCGATTCAGCCTGTTGCGGTTGGTG
TGGCAGGTCAGAAGAGGTCGTTCTTGTTTTACTCTGGTGGGGTCTATGAT
GACGAGATTGAGGGAGGGAGGGAGGGAGGGACGGTGGTCTTGAACCATGC
ACTGGTGGTGGTGGGGTACGGAAGGGATGAGAAAACAGGCTTGCCGTACT
GGCGGTGTAAGAATTCATGGGGAAAGGAGTGGGGGGAGGGGGGGTATGTG
CGCATTAGACGGAGGGAAGGAAGGAGTGAGGGACGGGGGGATCCTGGAGT
GTGTGGGATGGCATTGGCACCGTCGGTGCCAGTGGGGGCTTATGGAGGGA
ATGTGACTGCGTGGTTGCAGGCGAGGAGAAGGGAAGAAGGTGGAAGGAAA
TACCAGAAGAAGGGCGTTGGTGATAAGGGAGGAGGAGGGGGGGAGGACGG
GGGAGGAACGACGGACCCGAGTAGTATTGACGATGACGGACCGTTTGCTT
CCTTGTTGCCTGAGTGGGTGCAGCGTGTTCTGATGGGAGTAGGGGGATCG
ATGCTGCTTGTGCTGTGTGCAGTCTATTTTTATGCACGGCCTGTTGACAG
CTCCACGCCTCCTACCACTGCTCCTACTGCTGCTACTGCTGCTGCTGCTG
CTGGTGCTACTACTGCTACCGGGCAAGGGTATCAGCGGGTATGGAACAGG
AGAGGGATGAGGGGGAGGGAGGAGGTGGGAGAGGAAGCAGCGTTGGGAGA
TGGGGGAGGGGAGGAATCAAAGTACGGGGCGGTGTGAGAAACAAATGAAT
CATTAAATAAATGTGATGTCTCCAATTTTATTGATATTTCCCAGAAGAGA
GTTTTGTGTAAAAAGCTGCCGAGAGGGTAGAGAAGAGAAGCAGAGGCACG
GCACAGCTCGATGTGTAAAGCGACAAGGATCTCTCGTTACTTTTTTTAAA
CCAAAAATTAAAATAAAAAAGG back to topprotein sequence of jgi.p|Nanoce1779_2|543886 >mRNA_6356-protein ID=mRNA_6356-protein|Name=jgi.p|Nanoce1779_2|543886|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MPLLVLFLLLPVLCRGWGAVVAETHMWERYERYVREFGKTFGSLAEKETA
FQHFVQSDNYLQNFPRSPSTLSESSSPSSSSSSSSSFLPTFTVKHSYFSD
WSPEQIQTYFSSSFSWTSFLGTAKKDKGEGWVEDENEDKHVMKDSSSSNR
GSSMGPGMEHSDLSKGKKSKYHDGLQSAGATTASATTFDDPSFLYRPVSA
LSHLRPLPSSPPPGRSSLPSQLDWSIASLNPLGRSVVSPPINQGHCGGCW
SIVSASVVESAVAIATHAPLTPLSAQELLDCDTSWNAGCMGGNPIESFGW
VRKHGLASAASYPYHGQQQQCQLREVDSVSSIKGYKILRACDEDGIMKAL
AIQPVAVGVAGQKRSFLFYSGGVYDDEIEGGREGGTVVLNHALVVVGYGR
DEKTGLPYWRCKNSWGKEWGEGGYVRIRRREGRSEGRGDPGVCGMALAPS
VPVGAYGGNVTAWLQARRREEGGRKYQKKGVGDKGGGGGEDGGGTTDPSS
IDDDGPFASLLPEWVQRVLMGVGGSMLLVLCAVYFYARPVDSSTPPTTAP
TAATAAAAAGATTATGQGYQRVWNRRGMRGREEVGEEAALGDGGGEESKY
GAV* back to topmRNA from alignment at scaffold_15:424379..426589- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6356 ID=mRNA_6356|Name=jgi.p|Nanoce1779_2|543886|organism=Nannochloropsis oceanica|type=mRNA|length=2211bp|location=Sequence derived from alignment at scaffold_15:424379..426589- (Nannochloropsis oceanica)
ACAGGCTCGGGGTGGAAGAGGGGGAATCGAAGAAGGAGGAAGGAGGACCC
AGAGCCTTCAACCCCCCCTCTACAAATGCCGCTCCTCGTCCTCTTCCTGC
TGCTGCCCGTCCTCTGCCGTGGTTGGGGAGCAGTTGTCGCTGAGACGCAT
ATGTGGGAGCGCTACGAGCGCTATGTGAGGGAATTTGGCAAAGTAAGCTT
GATGTGTGAGGACAAATGAGGAGGAAAACGCAAACGTCATGCAAGATTCA
TGTCGCACTCTTGACAGACGAGCCGAAGTTGACACCCCCTTCTCACCCAC
TCACACTCACTCCCATCCCACTATTTCCTAGACATTTGGATCGCTTGCCG
AGAAAGAGACAGCATTCCAGCATTTTGTACAGTCCGACAACTACTTGCAG
AACTTCCCGCGCTCTCCCTCCACCCTATCCGAGTCATCCTCACCCTCATC
CTCCTCCTCCTCCTCCTCCTCCTTTCTTCCCACCTTCACCGTCAAGCACT
CATACTTCAGCGATTGGAGTCCAGAGCAAATCCAGACATATTTTTCCTCG
TCATTTTCATGGACTTCTTTCCTGGGCACAGCCAAGAAGGACAAGGGGGA
GGGATGGGTCGAGGACGAGAACGAGGATAAGCACGTAATGAAGGACAGCA
GTAGCAGCAACAGGGGCAGCAGCATGGGCCCAGGTATGGAGCACTCTGAT
TTGTCAAAGGGTAAGAAGAGTAAATACCATGATGGGTTACAGTCAGCAGG
AGCGACAACAGCATCAGCAACCACCTTCGACGATCCCTCCTTCCTCTACC
GCCCCGTCTCCGCCCTCTCCCACCTGCGGCCCCTCCCTTCGTCCCCCCCT
CCTGGCAGATCCTCCCTCCCCTCGCAACTAGACTGGAGCATCGCCAGCCT
CAACCCTCTAGGTCGTTCCGTGGTGTCCCCTCCTATAAATCAGGGACATT
GTGGGGGGTGCTGGTCGATCGTCAGTGCGTCCGTCGTGGAGTCAGCTGTC
GCCATTGCTACGCATGCGCCACTCACCCCCCTTTCCGCCCAAGAGCTCCT
TGATTGTGATACAAGCTGGAATGCGGGCTGTATGGGGGGTAACCCTATTG
AGTCCTTCGGGTGGGTGAGAAAGCATGGGTTAGCATCAGCGGCCTCTTAC
CCTTACCACGGACAGCAGCAACAGTGTCAGCTGCGGGAAGTAGACAGTGT
GAGCTCGATAAAGGGATACAAAATTCTCCGGGCCTGCGATGAGGATGGAA
TAATGAAAGCGCTCGCGATTCAGCCTGTTGCGGTTGGTGTGGCAGGTCAG
AAGAGGTCGTTCTTGTTTTACTCTGGTGGGGTCTATGATGACGAGATTGA
GGGAGGGAGGGAGGGAGGGACGGTGGTCTTGAACCATGCACTGGTGGTGG
TGGGGTACGGAAGGGATGAGAAAACAGGCTTGCCGTACTGGCGGTGTAAG
AATTCATGGGGAAAGGAGTGGGGGGAGGGGGGGTATGTGCGCATTAGACG
GAGGGAAGGAAGGAGTGAGGGACGGGGGGATCCTGGAGTGTGTGGGATGG
CATTGGCACCGTCGGTGCCAGTGGGGGCTTATGGAGGGAATGTGACTGCG
TGGTTGCAGGCGAGGAGAAGGGAAGAAGGTGGAAGGAAATACCAGAAGAA
GGGCGTTGGTGATAAGGGAGGAGGAGGGGGGGAGGACGGGGGAGGAACGA
CGGACCCGAGTAGTATTGACGATGACGGACCGTTTGCTTCCTTGTTGCCT
GAGTGGGTGCAGCGTGTTCTGATGGGAGTAGGGGGATCGATGCTGCTTGT
GCTGTGTGCAGTCTATTTTTATGCACGGCCTGTTGACAGCTCCACGCCTC
CTACCACTGCTCCTACTGCTGCTACTGCTGCTGCTGCTGCTGGTGCTACT
ACTGCTACCGGGCAAGGGTATCAGCGGGTATGGAACAGGAGAGGGATGAG
GGGGAGGGAGGAGGTGGGAGAGGAAGCAGCGTTGGGAGATGGGGGAGGGG
AGGAATCAAAGTACGGGGCGGTGTGAGAAACAAATGAATCATTAAATAAA
TGTGATGTCTCCAATTTTATTGATATTTCCCAGAAGAGAGTTTTGTGTAA
AAAGCTGCCGAGAGGGTAGAGAAGAGAAGCAGAGGCACGGCACAGCTCGA
TGTGTAAAGCGACAAGGATCTCTCGTTACTTTTTTTAAACCAAAAATTAA
AATAAAAAAGG back to topCoding sequence (CDS) from alignment at scaffold_15:424379..426589- >mRNA_6356 ID=mRNA_6356|Name=jgi.p|Nanoce1779_2|543886|organism=Nannochloropsis oceanica|type=CDS|length=3624bp|location=Sequence derived from alignment at scaffold_15:424379..426589- (Nannochloropsis oceanica)
ACATTTGGATCGCTTGCCGAGAAAGAGACAGCATTCCAGCATTTTGTACA
GTCCGACAACTACTTGCAGAACTTCCCGCGCTCTCCCTCCACCCTATCCG
AGTCATCCTCACCCTCATCCTCCTCCTCCTCCTCCTCCTCCTTTCTTCCC
ACCTTCACCGTCAAGCACTCATACTTCAGCGATTGGAGTCCAGAGCAAAT
CCAGACATATTTTTCCTCGTCATTTTCATGGACTTCTTTCCTGGGCACAG
CCAAGAAGGACAAGGGGGAGGGATGGGTCGAGGACGAGAACGAGGATAAG
CACGTAATGAAGGACAGCAGTAGCAGCAACAGGGGCAGCAGCATGGGCCC
AGGTATGGAGCACTCTGATTTGTCAAAGGGTAAGAAGAGTAAATACCATG
ATGGGTTACAGTCAGCAGGAGCGACAACAGCATCAGCAACCACCTTCGAC
GATCCCTCCTTCCTCTACCGCCCCGTCTCCGCCCTCTCCCACCTGCGGCC
CCTCCCTTCGTCCCCCCCTCCTGGCAGATCCTCCCTCCCCTCGCAACTAG
ACTGGAGCATCGCCAGCCTCAACCCTCTAGGTCGTTCCGTGGTGTCCCCT
CCTATAAATCAGGGACATTGTGGGGGGTGCTGGTCGATCGTCAGTGCGTC
CGTCGTGGAGTCAGCTGTCGCCATTGCTACGCATGCGCCACTCACCCCCC
TTTCCGCCCAAGAGCTCCTTGATTGTGATACAAGCTGGAATGCGGGCTGT
ATGGGGGGTAACCCTATTGAGTCCTTCGGGTGGGTGAGAAAGCATGGGTT
AGCATCAGCGGCCTCTTACCCTTACCACGGACAGCAGCAACAGTGTCAGC
TGCGGGAAGTAGACAGTGTGAGCTCGATAAAGGGATACAAAATTCTCCGG
GCCTGCGATGAGGATGGAATAATGAAAGCGCTCGCGATTCAGCCTGTTGC
GGTTGGTGTGGCAGGTCAGAAGAGGTCGTTCTTGTTTTACTCTGGTGGGG
TCTATGATGACGAGATTGAGGGAGGGAGGGAGGGAGGGACGGTGGTCTTG
AACCATGCACTGGTGGTGGTGGGGTACGGAAGGGATGAGAAAACAGGCTT
GCCGTACTGGCGGTGTAAGAATTCATGGGGAAAGGAGTGGGGGGAGGGGG
GGTATGTGCGCATTAGACGGAGGGAAGGAAGGAGTGAGGGACGGGGGGAT
CCTGGAGTGTGTGGGATGGCATTGGCACCGTCGGTGCCAGTGGGGGCTTA
TGGAGGGAATGTGACTGCGTGGTTGCAGGCGAGGAGAAGGGAAGAAGGTG
GAAGGAAATACCAGAAGAAGGGCGTTGGTGATAAGGGAGGAGGAGGGGGG
GAGGACGGGGGAGGAACGACGGACCCGAGTAGTATTGACGATGACGGACC
GTTTGCTTCCTTGTTGCCTGAGTGGGTGCAGCGTGTTCTGATGGGAGTAG
GGGGATCGATGCTGCTTGTGCTGTGTGCAGTCTATTTTTATGCACGGCCT
GTTGACAGCTCCACGCCTCCTACCACTGCTCCTACTGCTGCTACTGCTGC
TGCTGCTGCTGGTGCTACTACTGCTACCGGGCAAGGGTATCAGCGGGTAT
GGAACAGGAGAGGGATGAGGGGGAGGGAGGAGGTGGGAGAGGAAGCAGCG
TTGGGAGATGGGGGAGGGGAGGAATCAAAGTACGGGGCGGTGTGAATGCC
GCTCCTCGTCCTCTTCCTGCTGCTGCCCGTCCTCTGCCGTGGTTGGGGAG
CAGTTGTCGCTGAGACGCATATGTGGGAGCGCTACGAGCGCTATGTGAGG
GAATTTGGCAAAACATTTGGATCGCTTGCCGAGAAAGAGACAGCATTCCA
GCATTTTGTACAGTCCGACAACTACTTGCAGAACTTCCCGCGCTCTCCCT
CCACCCTATCCGAGTCATCCTCACCCTCATCCTCCTCCTCCTCCTCCTCC
TCCTTTCTTCCCACCTTCACCGTCAAGCACTCATACTTCAGCGATTGGAG
TCCAGAGCAAATCCAGACATATTTTTCCTCGTCATTTTCATGGACTTCTT
TCCTGGGCACAGCCAAGAAGGACAAGGGGGAGGGATGGGTCGAGGACGAG
AACGAGGATAAGCACGTAATGAAGGACAGCAGTAGCAGCAACAGGGGCAG
CAGCATGGGCCCAGGTATGGAGCACTCTGATTTGTCAAAGGGTAAGAAGA
GTAAATACCATGATGGGTTACAGTCAGCAGGAGCGACAACAGCATCAGCA
ACCACCTTCGACGATCCCTCCTTCCTCTACCGCCCCGTCTCCGCCCTCTC
CCACCTGCGGCCCCTCCCTTCGTCCCCCCCTCCTGGCAGATCCTCCCTCC
CCTCGCAACTAGACTGGAGCATCGCCAGCCTCAACCCTCTAGGTCGTTCC
GTGGTGTCCCCTCCTATAAATCAGGGACATTGTGGGGGGTGCTGGTCGAT
CGTCAGTGCGTCCGTCGTGGAGTCAGCTGTCGCCATTGCTACGCATGCGC
CACTCACCCCCCTTTCCGCCCAAGAGCTCCTTGATTGTGATACAAGCTGG
AATGCGGGCTGTATGGGGGGTAACCCTATTGAGTCCTTCGGGTGGGTGAG
AAAGCATGGGTTAGCATCAGCGGCCTCTTACCCTTACCACGGACAGCAGC
AACAGTGTCAGCTGCGGGAAGTAGACAGTGTGAGCTCGATAAAGGGATAC
AAAATTCTCCGGGCCTGCGATGAGGATGGAATAATGAAAGCGCTCGCGAT
TCAGCCTGTTGCGGTTGGTGTGGCAGGTCAGAAGAGGTCGTTCTTGTTTT
ACTCTGGTGGGGTCTATGATGACGAGATTGAGGGAGGGAGGGAGGGAGGG
ACGGTGGTCTTGAACCATGCACTGGTGGTGGTGGGGTACGGAAGGGATGA
GAAAACAGGCTTGCCGTACTGGCGGTGTAAGAATTCATGGGGAAAGGAGT
GGGGGGAGGGGGGGTATGTGCGCATTAGACGGAGGGAAGGAAGGAGTGAG
GGACGGGGGGATCCTGGAGTGTGTGGGATGGCATTGGCACCGTCGGTGCC
AGTGGGGGCTTATGGAGGGAATGTGACTGCGTGGTTGCAGGCGAGGAGAA
GGGAAGAAGGTGGAAGGAAATACCAGAAGAAGGGCGTTGGTGATAAGGGA
GGAGGAGGGGGGGAGGACGGGGGAGGAACGACGGACCCGAGTAGTATTGA
CGATGACGGACCGTTTGCTTCCTTGTTGCCTGAGTGGGTGCAGCGTGTTC
TGATGGGAGTAGGGGGATCGATGCTGCTTGTGCTGTGTGCAGTCTATTTT
TATGCACGGCCTGTTGACAGCTCCACGCCTCCTACCACTGCTCCTACTGC
TGCTACTGCTGCTGCTGCTGCTGGTGCTACTACTGCTACCGGGCAAGGGT
ATCAGCGGGTATGGAACAGGAGAGGGATGAGGGGGAGGGAGGAGGTGGGA
GAGGAAGCAGCGTTGGGAGATGGGGGAGGGGAGGAATCAAAGTACGGGGC
GGTGTGAATGCCGCTCCTCGTCCTCTTCCTGCTGCTGCCCGTCCTCTGCC
GTGGTTGGGGAGCAGTTGTCGCTGAGACGCATATGTGGGAGCGCTACGAG
CGCTATGTGAGGGAATTTGGCAAA back to top
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