jgi.p|Nanoce1779_2|567001, gene_6242 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567001
Unique Namegene_6242
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_15:113432..115132 -

Link to JBrowse

Properties
Property NameValue
TranscriptId567087
ProteinId567001
Product nameMechanosensitive ion channel-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:113432..115132 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL020ncniL020Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00340NO20G00340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567001mRNA_6242-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567001mRNA_6242Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|567001

>mRNA_6242-protein ID=mRNA_6242-protein|Name=jgi.p|Nanoce1779_2|567001|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MLLCLGALALTLQKGSTVAVGLWAVCLCWDLLELLLLKSWRSSSSSSSSS
SSSSSSSSSSSPYSPDPTLVSALGFTRPLAVFAAFLTLLHSVGVDVTSVI
AGFGVGGLAMALSTQTVLQDVSAGLALLVDRPFELGDLVGTGAFRGMVTR
IGLKSTTVRAVSGEVLVVCNKEMACGRVSRFPRVCDRMKTFTLPLDKSVT
TDQLEMVCATVIRSLEKLSFTRVAPRDKHEKEKEKEKEEEEEEEREGGRL
KVGFVGVVDLTGWCVNVEVNYTLMSATLTEQKQTHAQVLLGVMDAVSLAG
VKIVAPPRF*
back to top
Synonyms
Publications