NO20G00340, NO20G00340 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G00340 vs. NCBI_GenBank
Match: WP_029909781.1 (mechanosensitive ion channel family protein [Pelobacter seleniigenes]) HSP 1 Score: 111.3 bits (277), Expect = 8.700e-21 Identity = 58/156 (37.18%), Postives = 98/156 (62.82%), Query Frame = 0 Query: 256 TLVSALGFTRPLAVFAAFLTL-LHSVGVDVTSVIAGFGVGGLAMALSTQTVLQDVSAGLALLVDRPFELGDLVGTGAFRGMVTRIGLKSTTVRAVSGEVLVVCNKEMACGRVSRFPRVCDRMKTFTLPLDKSVTTDQLEMVCATVIRSLEKLSFTR 411 T +SA+ F L +++ + L L ++G+DVT+++AG GVGG+A+AL+TQ +L D+ A L+++VD+PFE+GD + + G V IGLK+T +R++ GE ++ N ++ RV + R+ +R F+ + T DQLE + + +E L TR Sbjct: 138 TSLSAVSFLSKLVIWSVIMLLTLDNLGIDVTALVAGLGVGGVAVALATQNILGDLFASLSIIVDKPFEIGDFIIVNDYLGSVENIGLKTTRIRSLGGEQIIFSNSDLLSSRVRNYKRMQERRVVFSFGVIYQTTADQLEEIPGMIRAIIENLEATR 293
BLAST of NO20G00340 vs. NCBI_GenBank
Match: OIO55856.1 (hypothetical protein AUJ46_00010 [Candidatus Peregrinibacteria bacterium CG1_02_54_53]) HSP 1 Score: 110.9 bits (276), Expect = 1.100e-20 Identity = 58/143 (40.56%), Postives = 90/143 (62.94%), Query Frame = 0 Query: 272 AFLTLLHSVGVDVTSVIAGFGVGGLAMALSTQTVLQDVSAGLALLVDRPFELGDLVGTGAFRGMVTRIGLKSTTVRAVSGEVLVVCNKEMACGRVSRFPRVCDRMKTFTLPLDKSVTTDQLEM---VCATVIRSLEKLSFTRV 412 A L +L ++G++VT+++A GVGG+A+AL+ Q +L DV ++L +DRPFE GD + G G V R+GLK+T + A+SGE LV+ N E+ R+ F ++ DR FT L+ +TD+L+ + VI+ E+ S RV Sbjct: 147 ALLLILSNLGIEVTALVASLGVGGIAVALAVQNILGDVFNSISLYIDRPFETGDFIVVGPHMGTVQRVGLKTTRILALSGEELVISNSELTAARIQNFKKMRDRRVLFTFGLEYGTSTDKLKRAKEIVTQVIKETEESSLDRV 289
BLAST of NO20G00340 vs. NCBI_GenBank
Match: WP_052074494.1 (mechanosensitive ion channel family protein [Shewanella mangrovi]) HSP 1 Score: 109.0 bits (271), Expect = 4.300e-20 Identity = 58/155 (37.42%), Postives = 97/155 (62.58%), Query Frame = 0 Query: 256 TLVSALGFTRPLAVFAAFLTL-LHSVGVDVTSVIAGFGVGGLAMALSTQTVLQDVSAGLALLVDRPFELGDLVGTGAFRGMVTRIGLKSTTVRAVSGEVLVVCNKEMACGRVSRFPRVCDRMKTFTLPLDKSVTTDQLEMVCATVIRSLEKLSFT 410 T ++A+ F L ++ L L L ++G+DVT+++AG GVGG+A+AL+ Q +L D+ A L++++D+PFE+GD + G + G+V IGLK+T + ++ GE +V N ++ RV + R+ R F+ + T +QLEM+ V R +E L T Sbjct: 139 TSLAAVSFLSRLVIWTIILLLTLDNIGIDVTALVAGLGVGGVAVALAIQNILGDLFASLSIIIDKPFEIGDFIVVGDYMGVVANIGLKTTRISSLGGEQIVFSNSDLLSARVRNYKRMQQRRVVFSFGVLYQTTANQLEMIPKIVRRIIEGLEGT 293
BLAST of NO20G00340 vs. NCBI_GenBank
Match: WP_093140196.1 (hypothetical protein [Pseudoxanthomonas sp. GM95] >SEM10275.1 Small-conductance mechanosensitive channel [Pseudoxanthomonas sp. GM95]) HSP 1 Score: 107.1 bits (266), Expect = 1.600e-19 Identity = 88/292 (30.14%), Postives = 135/292 (46.23%), Query Frame = 0 Query: 114 IDRWKHALDTMLLCLGAWQIGAFALLSILRALASLTHTTADEAVLELIANYLRGQNGWPRLAVIFSSLYLSSLPLHLEELYPALALTLQKGSTVAVGLWAVCLCWDLLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPTLVSALGFTRPLAVFA-AFLTLLHSVGVDVTSVIAGFGVGGLAMALSTQTVLQDVSAGLALLVDRPFELGDLVGTGAFRGMVTRIGLKSTTVRAVSGEVLVVCNKEMACGRVSRFPRVCDRMKTFTLPLDKSVTTDQLEMVCATVIRSLE 405 + W A L L A+ I ++ L A+A T + V E +A LRG W ++F +L+ LHL E +A G AV L+ W ++ T + A+ F ++A L +L ++GVD+T++IAG GVGG+A+AL+ Q VL D+ A L++++D+PF +GD V G F G V +GLK+T +R++SGE LV N +M R+ + R+ R F + S DQL + A V L+ Sbjct: 14 VQAWLTATGITLAALCAFAIARRVVVGRLGAIAK--QGTTIDRVFESLAYALRGTRLW---LLLFPALHFGLQALHLPERAYGIA-----GKAAAVALFLQIGVWGSRQIRFWIDNSKARAAEDTNLGA------------TTSLGAVKFVGLTVLWAVVLLVVLQNLGVDITALIAGLGVGGIAVALAVQNVLGDLFASLSIVIDKPFVVGDFVVVGEFAGTVEHVGLKTTRLRSLSGEQLVFANSDMLAARLRNYKRMDTRRIVFEFRVPLSTPHDQLASIPAMVREILD 283
BLAST of NO20G00340 vs. NCBI_GenBank
Match: KPK04844.1 (mechanosensitive ion channel protein MscS [Gemmatimonas sp. SG8_28]) HSP 1 Score: 106.3 bits (264), Expect = 2.800e-19 Identity = 85/281 (30.25%), Postives = 136/281 (48.40%), Query Frame = 0 Query: 143 RALASLTHTTADEAVLELIANYLRGQNGWPRLAVIFSS---LYLSSLPLHLEELYPALA------LTLQKGSTVAVGLWAVCLCWDLLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDP---TLVSALGFTRPLAVFAAFLTL-LHSVGVDVTSVIAGFGVGGLAMALSTQTVLQDVSAGLALLVDRPFELGDLVGTGAFRGMVTRIGLKSTTVRAVSGEVLVVCNKEMACGRVSRFPRVCDRMKTFTLPLDKSVTTDQLEMVCATVIRSLEKLSFTR 411 R+L+ T TT D+ ++EL+ R V F + +Y S PL L E + L L +G GLWA LLE DP T + ALGF L V++ L L L ++GVD+T+++ G G+GG+A+AL+ Q VL D+ A LA+++D+PF +GD + G G V +GLK+T +R++SGE LV N ++ R+ + R+ +R FT+ + + +E++ + ++E+ TR Sbjct: 43 RSLSERTRTTVDDLLVELLG----------RTKVFFYAAIGVYFGSKPLALSENVDTIVNHLVVMLILVQG-----GLWANAAVSSLLE----------------------SYRRDRLQEDPAAATTIGALGFVARLGVWSLVLVLALDNLGVDITALVTGLGIGGIAVALAVQNVLGDLFASLAIVLDKPFVIGDFIIVGDHLGSVEHVGLKTTRLRSLSGEQLVFSNSDLLGSRIRNYGRMYERRIVFTIGVTYQTPRNHVELIPTILREAVEEQQQTR 286
BLAST of NO20G00340 vs. NCBI_GenBank
Match: OFZ38726.1 (hypothetical protein A2385_05945 [Bdellovibrionales bacterium RIFOXYB1_FULL_39_21] >OFZ41821.1 hypothetical protein A2485_07915 [Bdellovibrionales bacterium RIFOXYC12_FULL_39_17] >OFZ50537.1 hypothetical protein A2404_04865 [Bdellovibrionales bacterium RIFOXYC1_FULL_39_130] >OFZ71800.1 hypothetical protein A2451_07100 [Bdellovibrionales bacterium RIFOXYC2_FULL_39_8] >OFZ77760.1 hypothetical protein A2560_00035 [Bdellovibrionales bacterium RIFOXYD1_FULL_39_84] >OFZ93804.1 hypothetical protein A2504_05880 [Bdellovibrionales bacterium RIFOXYD12_FULL_39_22]) HSP 1 Score: 106.3 bits (264), Expect = 2.800e-19 Identity = 55/138 (39.86%), Postives = 87/138 (63.04%), Query Frame = 0 Query: 273 FLTLLHSVGVDVTSVIAGFGVGGLAMALSTQTVLQDVSAGLALLVDRPFELGDLVGTGAFRGMVTRIGLKSTTVRAVSGEVLVVCNKEMACGRVSRFPRVCDRMKTFTLPLDKSVTTDQLEMVCATVIRSLEKLSFTR 411 FL LLH++GV++T++I G GVGG+A+AL+ Q +L D+ A L +++D+PF +GD + F G V RIGLK+T +R++SGE L+ N + R+ + R+ +R +FTL + DQLE V + + + S R Sbjct: 147 FLLLLHNIGVNITTLITGLGVGGIAVALAVQNILGDLFASLTIILDKPFSVGDSITVDGFIGTVERIGLKTTHLRSLSGEQLIFSNNSILQSRIRNYKRMSERRVSFTLGVVYQTGADQLEKVPSIIKEIITSTSTVR 284
BLAST of NO20G00340 vs. NCBI_GenBank
Match: PIT90652.1 (mechanosensitive ion channel protein MscS, partial [Candidatus Komeilibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_41_13]) HSP 1 Score: 106.3 bits (264), Expect = 2.800e-19 Identity = 55/138 (39.86%), Postives = 88/138 (63.77%), Query Frame = 0 Query: 276 LLHSVGVDVTSVIAGFGVGGLAMALSTQTVLQDVSAGLALLVDRPFELGDLVGTGAFRGMVTRIGLKSTTVRAVSGEVLVVCNKEMACGRVSRFPRVCDRMKTFTLPLDKSVTTDQLEMV---CATVIRSLEKLSFTR 411 +L ++GVD+TS+IAG G+GGLA+AL+ Q VL D+ + +L D+PF++GD + G+ G V +IGLK+T +R + GE LV+ NKE+ RV F ++ R F+L + T D+LE + +I+ ++ F+R Sbjct: 137 VLSNLGVDITSLIAGLGIGGLAVALALQNVLSDIFSSFSLYFDKPFKIGDFIAVGSNSGTVEKIGLKTTRLRTLQGEELVIANKELTSVRVQNFKKMQKRRVVFSLGVVYETTADKLEKIPKLIEEIIKPIKNAEFSR 274
BLAST of NO20G00340 vs. NCBI_GenBank
Match: PIR47051.1 (mechanosensitive ion channel protein MscS [Candidatus Vogelbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_45_14]) HSP 1 Score: 105.5 bits (262), Expect = 4.700e-19 Identity = 60/157 (38.22%), Postives = 97/157 (61.78%), Query Frame = 0 Query: 257 LVSALGFTRPLAVFAAFLTLLHSVGVDVTSVIAGFGVGGLAMALSTQTVLQDVSAGLALLVDRPFELGDLVGTGAFRGMVTRIGLKSTTVRAVSGEVLVVCNKEMACGRVSRFPRVCDRMKTFTLPL---DKSVTTDQLEMVCATVIRSLEKLSFTR 411 L+S LG + + FL +L ++G+DVTS++AG G+GG+A+AL+ Q+VL D+ + A+ +D+PFE GD + GA G V +IG+KST ++A+ GE +V+ NKE+ RV F ++ R F + S D++ ++ VI +EK+ F R Sbjct: 141 LMSNLG--KWVLYIVGFLFVLQNLGIDVTSIMAGLGIGGIAIALALQSVLSDLFSSFAIYLDKPFEHGDFIVAGAHMGTVEKIGIKSTRLKALQGEEIVISNKELTTARVQNFKKLEARRVLFAFGVVYGTASEVMDRIPVLVQRVIGGIEKVRFDR 295
BLAST of NO20G00340 vs. NCBI_GenBank
Match: KFO66899.1 (mechanosensitive ion channel protein MscS [Smithella sp. SCADC]) HSP 1 Score: 104.8 bits (260), Expect = 8.100e-19 Identity = 86/307 (28.01%), Postives = 151/307 (49.19%), Query Frame = 0 Query: 114 IDRWKHALDTMLLCLGAWQIGAFALLSILRALASLTHTTADEAVLELIANYLRGQNGWPRLAVIFSSLYLSSLPLHLEELYPALALTLQKGSTV----AVGLWAVC-LCWDLLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPTLVSALGFTRPLAVF-AAFLTLLHSVGVDVTSVIAGFGVGGLAMALSTQTVLQDVSAGLALLVDRPFELGDLVGTGAFRGMVTRIGLKSTTVRAVSGEVLVVCNKEMACGRVSRFPRVCDRMKTFTLPLDKSVTTDQLE---MVCATVIRSLEKLSFTRV 412 + W AL T+++ L A I L++ L LA+ T D + +LI N LR ++ +S+YL+SL + L+ P+LA QK + GLWA + + L E+ T ++ LGF ++ FL +L ++GV++T ++AG G+GG+A+AL+ Q +L D+ A L++++D+PF +GD + + G + IGLK+T +R++SGE L+ N ++ R+ + R+ +R F+ + T++L+ + +I E F RV Sbjct: 13 LQSWLCALITLIVALTALIITQKVLINKLSKLAAAT----DNQIDDLIVNMLRQTK---HFILVIASIYLASLTITLK---PSLAELWQKVVILMFIFQAGLWASAGISFVLGEI--------------------IRKRSAEDTSTKTTITFLGFVARFVLWIIIFLLILDNLGVNITGLVAGLGIGGIAVALAVQNILGDLLASLSIVLDKPFVIGDFIVVDSLSGTIEHIGLKTTRIRSLSGEQLIFSNNDLLKTRIRNYKRMSERRIVFSFGIIYQTPTEKLKNVNKIVRDIIEKTENARFDRV 289
BLAST of NO20G00340 vs. NCBI_GenBank
Match: KPK75135.1 (mechanosensitive ion channel protein MscS [Gemmatimonas sp. SM23_52]) HSP 1 Score: 104.0 bits (258), Expect = 1.400e-18 Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 0 Query: 256 TLVSALGFTRPLAVFAAFLTL-LHSVGVDVTSVIAGFGVGGLAMALSTQTVLQDVSAGLALLVDRPFELGDLVGTGAFRGMVTRIGLKSTTVRAVSGEVLVVCNKEMACGRVSRFPRVCDRMKTFTLPLDKSVTTDQLEMVCATVIRSLEKLSFTR 411 T + AL F L ++ L L L ++GVDVT+++ G G+GGLA+AL+ Q VL D+ A L++++D+PF +GD + G + G V IGLKST VR++SGE LV N ++ R+ + R+ R F+ + D+L + V +E L TR Sbjct: 130 TSIGALRFVGQLLLWTVILLLALDNLGVDVTALVTGLGIGGLAVALALQNVLSDLFASLSIVLDKPFVIGDFIIVGDYLGSVEHIGLKSTRVRSLSGEQLVFSNADLLGSRIRNYKRMAQRRIVFSFGIVYQTPLDKLAAIPGMVQEIIESLENTR 285 The following BLAST results are available for this feature:
BLAST of NO20G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G00340 ID=NO20G00340|Name=NO20G00340|organism=Nannochloropsis oceanica|type=gene|length=2496bpback to top protein sequence of NO20G00340.1 >NO20G00340.1-protein ID=NO20G00340.1-protein|Name=NO20G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bpback to top Synonyms
Publications
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