jgi.p|Nanoce1779_2|567001, mRNA_6242 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|567001
Unique Name	mRNA_6242
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	930
Alignment location	scaffold_15:113432..115132 -

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Properties


Property Name	Value
TranscriptId	567087
Track	FilteredModels2
ProteinId	567001

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:113432..115132 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|567001	gene_6242	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|567001	mRNA_6242-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6242	CDS_6242	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:113432..115132-
coding sequence from alignment at scaffold_15:113432..115132-

mRNA sequence

>mRNA_6242 ID=mRNA_6242|Name=jgi.p|Nanoce1779_2|567001|organism=Nannochloropsis oceanica|type=mRNA|length=930bp
ATGCTCCTGTGTTTGGGAGCCCTCGCCCTTACCCTCCAAAAAGGCTCCAC
AGTCGCGGTCGGACTATGGGCCGTCTGCCTCTGCTGGGACCTTCTAGAAC
TCCTCCTCCTCAAATCCTGGCGCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTACTCGCCTGATCC
AACCTTGGTGTCAGCCCTGGGGTTCACGAGGCCTCTCGCGGTGTTTGCGG
CCTTCCTTACCTTGCTCCATTCCGTGGGGGTGGACGTGACGTCGGTCATT
GCGGGGTTCGGAGTAGGCGGGCTGGCGATGGCCCTTTCGACACAAACAGT
GCTGCAAGATGTGTCGGCAGGCTTGGCGCTGTTGGTAGACAGGCCGTTTG
AATTAGGCGACCTGGTGGGCACAGGGGCCTTCAGGGGGATGGTTACCCGC
ATAGGGTTAAAGAGCACAACTGTGCGTGCTGTCTCGGGCGAAGTATTGGT
TGTTTGTAATAAAGAAATGGCCTGTGGAAGAGTGAGCAGGTTCCCTCGCG
TCTGCGACAGAATGAAGACCTTTACACTTCCTTTAGATAAATCTGTCACC
ACGGATCAATTGGAGATGGTATGTGCGACTGTCATTCGCTCCCTTGAAAA
ACTCTCTTTCACTCGTGTAGCTCCCAGAGACAAACACGAGAAGGAGAAGG
AGAAGGAGAAGGAGGAGGAGGAGGAGGAGGAGAGGGAGGGAGGAAGGCTG
AAGGTCGGGTTTGTGGGGGTCGTGGATCTTACGGGATGGTGTGTAAATGT
GGAGGTTAATTACACCTTGATGAGCGCGACATTGACCGAGCAGAAACAGA
CGCACGCCCAGGTCTTGCTAGGGGTGATGGATGCTGTGTCCCTCGCAGGA
GTGAAGATTGTCGCTCCTCCACGCTTCTAG

protein sequence of jgi.p|Nanoce1779_2|567001

>mRNA_6242-protein ID=mRNA_6242-protein|Name=jgi.p|Nanoce1779_2|567001|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MLLCLGALALTLQKGSTVAVGLWAVCLCWDLLELLLLKSWRSSSSSSSSS
SSSSSSSSSSSPYSPDPTLVSALGFTRPLAVFAAFLTLLHSVGVDVTSVI
AGFGVGGLAMALSTQTVLQDVSAGLALLVDRPFELGDLVGTGAFRGMVTR
IGLKSTTVRAVSGEVLVVCNKEMACGRVSRFPRVCDRMKTFTLPLDKSVT
TDQLEMVCATVIRSLEKLSFTRVAPRDKHEKEKEKEKEEEEEEEREGGRL
KVGFVGVVDLTGWCVNVEVNYTLMSATLTEQKQTHAQVLLGVMDAVSLAG
VKIVAPPRF*

mRNA from alignment at scaffold_15:113432..115132-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6242 ID=mRNA_6242|Name=jgi.p|Nanoce1779_2|567001|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp|location=Sequence derived from alignment at scaffold_15:113432..115132- (Nannochloropsis oceanica)
ATGCTCCTGTGTTTGGGAGGTAAGTGAGTGCCGGTGAGGGATGAAAGGGA
TCTTCCATAAGCAGAGCATTGCGCATTCCTCTTGTCTTTTTCTCATCCAC
AAGCATACAACACCTCAATTTCTTCCTTTCCTCCCATCTCGTTCCAATGT
CTAGCCTGGCAAATCGGCGCATTTGCCCTCCTTTCCATCCTCCGAGCTCT
CGCGAGTCTCACCCACACCACCGCTGACGAAGCAGTCCTGGAGCTGATCG
CAAATTATTTGCGAGGCCAGAATGGATGGCCACGGTTGGCCGTTATTTTT
TCGTCGTTGTACCTGTCGAGTTTGCCGTTGCACTTGGAGGAGCTTTATCC
GGGTGAGGGAGGGAAGGAGGAGGGCAGTGGTCGGTGAGATAAGGCGTCTA
TTGCATTTTTGATAAGCACACGCGCAAACTCCGAACTCTGACTCCCTTTC
TCCTTTCTTCCTCTCCTTTCCTTCTCATCCCTCCCTCCCCCCAGCCCTCG
CCCTTACCCTCCAAAAAGGCTCCACAGTCGCGGTCGGACTATGGGCCGTC
TGCCTCTGCTGGGACCTTCTAGAACTCCTCCTCCTCAAATCCTGGCGCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCCCTTACTCGCCTGATCCAACCTTGGTGTCAGCCCTGGGGTTC
ACGAGGCCTCTCGCGGTGTTTGCGGCCTTCCTTACCTTGCTCCATTCCGT
GGGGGTGGACGTGACGTCGGTCATTGCGGGGTTCGGAGTAGGCGGGCTGG
CGATGGCCCTTTCGACACAAACAGTGCTGCAAGATGTGTCGGCAGGCTTG
GCGCTGTTGGTAGACAGGCCGTTTGAATTAGGTCTGTCGTTTATTCCCTC
CCTCCCTCCTTTCCTCCCTCCCTCCCTTCCTTCCTCCGTTGTCGTCTCCC
CGTCCCTCCCTTCGTAGAATTAAAGGAATTTGAATCCACAAAGACAGTCA
TAAGAAGATTTCTAACTCTCCCTTCATCCTTCCTCCTTCCCCCTCCTTCC
ATCCCTCCCTCCCTCCCTCCCTCCCTCCCATCCTCCGTGCAGGCGACCTG
GTGGGCACAGGGGCCTTCAGGGGGATGGTTACCCGCATAGGGTTAAAGAG
CACAACTGTGCGTGCTGTCTCGGGCGAAGTATTGGTTGTTTGTAATAAAG
AAATGGCCTGTGGAAGGTACGTGCCATCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTCCTCACCCTTCCTCACCCTCCCTCTGAGCA
GAGTGAGCAGGTTCCCTCGCGTCTGCGACAGAATGAAGACCTTTACACTT
CCTTTAGATAAATCTGTCACCACGGATCAATTGGAGATGGTATGTGCGAC
TGTCATTCGCTCCCTTGAAAAACTCTCTTTCACTCGTGTAGCTCCCAGAG
ACAAACACGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGGAGGAGGAG
GAGAGGGAGGGAGGAAGGCTGAAGGTCGGGTTTGTGGGGGTCGTGGATCT
TACGGGATGGTGTGTAAATGTGGAGGTTAATTACACCTTGATGAGCGCGA
CATTGACCGAGCAGAAACAGACGCACGCCCAGGTCTTGCTAGGGGTGATG
GATGCTGTGTCCCTCGCAGGAGTGAAGATTGTCGCTCCTCCACGCTTCTA
G

Coding sequence (CDS) from alignment at scaffold_15:113432..115132-

>mRNA_6242 ID=mRNA_6242|Name=jgi.p|Nanoce1779_2|567001|organism=Nannochloropsis oceanica|type=CDS|length=3720bp|location=Sequence derived from alignment at scaffold_15:113432..115132- (Nannochloropsis oceanica)
AGTGAGCAGGTTCCCTCGCGTCTGCGACAGAATGAAGACCTTTACACTTC
CTTTAGATAAATCTGTCACCACGGATCAATTGGAGATGGTATGTGCGACT
GTCATTCGCTCCCTTGAAAAACTCTCTTTCACTCGTGTAGCTCCCAGAGA
CAAACACGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGGAGGAGGAGG
AGAGGGAGGGAGGAAGGCTGAAGGTCGGGTTTGTGGGGGTCGTGGATCTT
ACGGGATGGTGTGTAAATGTGGAGGTTAATTACACCTTGATGAGCGCGAC
ATTGACCGAGCAGAAACAGACGCACGCCCAGGTCTTGCTAGGGGTGATGG
ATGCTGTGTCCCTCGCAGGAGTGAAGATTGTCGCTCCTCCACGCTTCTAG
GCGACCTGGTGGGCACAGGGGCCTTCAGGGGGATGGTTACCCGCATAGGG
TTAAAGAGCACAACTGTGCGTGCTGTCTCGGGCGAAGTATTGGTTGTTTG
TAATAAAGAAATGGCCTGTGGAAGCCCTCGCCCTTACCCTCCAAAAAGGC
TCCACAGTCGCGGTCGGACTATGGGCCGTCTGCCTCTGCTGGGACCTTCT
AGAACTCCTCCTCCTCAAATCCTGGCGCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTACTCGCCT
GATCCAACCTTGGTGTCAGCCCTGGGGTTCACGAGGCCTCTCGCGGTGTT
TGCGGCCTTCCTTACCTTGCTCCATTCCGTGGGGGTGGACGTGACGTCGG
TCATTGCGGGGTTCGGAGTAGGCGGGCTGGCGATGGCCCTTTCGACACAA
ACAGTGCTGCAAGATGTGTCGGCAGGCTTGGCGCTGTTGGTAGACAGGCC
GTTTGAATTAGATGCTCCTGTGTTTGGGAGAGTGAGCAGGTTCCCTCGCG
TCTGCGACAGAATGAAGACCTTTACACTTCCTTTAGATAAATCTGTCACC
ACGGATCAATTGGAGATGGTATGTGCGACTGTCATTCGCTCCCTTGAAAA
ACTCTCTTTCACTCGTGTAGCTCCCAGAGACAAACACGAGAAGGAGAAGG
AGAAGGAGAAGGAGGAGGAGGAGGAGGAGGAGAGGGAGGGAGGAAGGCTG
AAGGTCGGGTTTGTGGGGGTCGTGGATCTTACGGGATGGTGTGTAAATGT
GGAGGTTAATTACACCTTGATGAGCGCGACATTGACCGAGCAGAAACAGA
CGCACGCCCAGGTCTTGCTAGGGGTGATGGATGCTGTGTCCCTCGCAGGA
GTGAAGATTGTCGCTCCTCCACGCTTCTAGGCGACCTGGTGGGCACAGGG
GCCTTCAGGGGGATGGTTACCCGCATAGGGTTAAAGAGCACAACTGTGCG
TGCTGTCTCGGGCGAAGTATTGGTTGTTTGTAATAAAGAAATGGCCTGTG
GAAGCCCTCGCCCTTACCCTCCAAAAAGGCTCCACAGTCGCGGTCGGACT
ATGGGCCGTCTGCCTCTGCTGGGACCTTCTAGAACTCCTCCTCCTCAAAT
CCTGGCGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCCCTTACTCGCCTGATCCAACCTTGGTGTCAGC
CCTGGGGTTCACGAGGCCTCTCGCGGTGTTTGCGGCCTTCCTTACCTTGC
TCCATTCCGTGGGGGTGGACGTGACGTCGGTCATTGCGGGGTTCGGAGTA
GGCGGGCTGGCGATGGCCCTTTCGACACAAACAGTGCTGCAAGATGTGTC
GGCAGGCTTGGCGCTGTTGGTAGACAGGCCGTTTGAATTAGATGCTCCTG
TGTTTGGGAGAGTGAGCAGGTTCCCTCGCGTCTGCGACAGAATGAAGACC
TTTACACTTCCTTTAGATAAATCTGTCACCACGGATCAATTGGAGATGGT
ATGTGCGACTGTCATTCGCTCCCTTGAAAAACTCTCTTTCACTCGTGTAG
CTCCCAGAGACAAACACGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAG
GAGGAGGAGGAGAGGGAGGGAGGAAGGCTGAAGGTCGGGTTTGTGGGGGT
CGTGGATCTTACGGGATGGTGTGTAAATGTGGAGGTTAATTACACCTTGA
TGAGCGCGACATTGACCGAGCAGAAACAGACGCACGCCCAGGTCTTGCTA
GGGGTGATGGATGCTGTGTCCCTCGCAGGAGTGAAGATTGTCGCTCCTCC
ACGCTTCTAGGCGACCTGGTGGGCACAGGGGCCTTCAGGGGGATGGTTAC
CCGCATAGGGTTAAAGAGCACAACTGTGCGTGCTGTCTCGGGCGAAGTAT
TGGTTGTTTGTAATAAAGAAATGGCCTGTGGAAGCCCTCGCCCTTACCCT
CCAAAAAGGCTCCACAGTCGCGGTCGGACTATGGGCCGTCTGCCTCTGCT
GGGACCTTCTAGAACTCCTCCTCCTCAAATCCTGGCGCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCC
TTACTCGCCTGATCCAACCTTGGTGTCAGCCCTGGGGTTCACGAGGCCTC
TCGCGGTGTTTGCGGCCTTCCTTACCTTGCTCCATTCCGTGGGGGTGGAC
GTGACGTCGGTCATTGCGGGGTTCGGAGTAGGCGGGCTGGCGATGGCCCT
TTCGACACAAACAGTGCTGCAAGATGTGTCGGCAGGCTTGGCGCTGTTGG
TAGACAGGCCGTTTGAATTAGATGCTCCTGTGTTTGGGAGAGTGAGCAGG
TTCCCTCGCGTCTGCGACAGAATGAAGACCTTTACACTTCCTTTAGATAA
ATCTGTCACCACGGATCAATTGGAGATGGTATGTGCGACTGTCATTCGCT
CCCTTGAAAAACTCTCTTTCACTCGTGTAGCTCCCAGAGACAAACACGAG
AAGGAGAAGGAGAAGGAGAAGGAGGAGGAGGAGGAGGAGGAGAGGGAGGG
AGGAAGGCTGAAGGTCGGGTTTGTGGGGGTCGTGGATCTTACGGGATGGT
GTGTAAATGTGGAGGTTAATTACACCTTGATGAGCGCGACATTGACCGAG
CAGAAACAGACGCACGCCCAGGTCTTGCTAGGGGTGATGGATGCTGTGTC
CCTCGCAGGAGTGAAGATTGTCGCTCCTCCACGCTTCTAGGCGACCTGGT
GGGCACAGGGGCCTTCAGGGGGATGGTTACCCGCATAGGGTTAAAGAGCA
CAACTGTGCGTGCTGTCTCGGGCGAAGTATTGGTTGTTTGTAATAAAGAA
ATGGCCTGTGGAAGCCCTCGCCCTTACCCTCCAAAAAGGCTCCACAGTCG
CGGTCGGACTATGGGCCGTCTGCCTCTGCTGGGACCTTCTAGAACTCCTC
CTCCTCAAATCCTGGCGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTACTCGCCTGATCCAACCT
TGGTGTCAGCCCTGGGGTTCACGAGGCCTCTCGCGGTGTTTGCGGCCTTC
CTTACCTTGCTCCATTCCGTGGGGGTGGACGTGACGTCGGTCATTGCGGG
GTTCGGAGTAGGCGGGCTGGCGATGGCCCTTTCGACACAAACAGTGCTGC
AAGATGTGTCGGCAGGCTTGGCGCTGTTGGTAGACAGGCCGTTTGAATTA
GATGCTCCTGTGTTTGGGAG

Synonyms

Publications