jgi.p|Nanoce1779_2|577552, gene_518 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577552
Unique Namegene_518
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_3:1253918..1256154 -

Link to JBrowse

Properties
Property NameValue
TranscriptId577638
ProteinId577552
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1253918..1256154 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004827proline-tRNA ligase activity
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006433prolyl-tRNA aminoacylation
GO:0006412translation
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL047ncniL047Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04920NO01G04920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577552mRNA_518-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577552mRNA_518Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|577552

>mRNA_518-protein ID=mRNA_518-protein|Name=jgi.p|Nanoce1779_2|577552|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MPPPPILGGFRLLIATSGMLLLLTRRLSLTAAFVPKRCPSTLNRIHSSRS
QSSSHSSSSSFRSSSSLFSPHRRRSTGAYHLLSSTTSSGPAVESLRAAIG
AKGDEIRALKGSGADKAALQPLITELLGLKKQYEEETGEPFDPPKAGGSD
GGGKKKKASGGSSSSKKKVKPKNNNGEDDDGIMMQYADRASLVITPRDEN
YSQWYLDVIAAADLVDQSPVKGCMVIKPYGMALWDALREELDKRIKATGA
QNAYFPLFIPRSFLSKEAEHVDGFAKECAVVTHHRLCADPSGAPGLIPDP
TAKLEEPLVVRPTSETVIWNMFSKWIGSHRDLPLKINQWANVVRWEMRTR
PFLRSAEFLWQEGHTAHATREEALVCAKEQLDLYASVCEDMLALPVIKGI
KSETERFAGADETFTIEALMQNGWALQSGTSHFLGQNFARAFDVFFQTKE
GGREMVWATSWGVSTRLIGALVMTHSDDKGLVLPPSVAPVQVVVVPIVKG
AGSEEDDRTTAFVNTVVSAMRTQGIRVLVDDRPNMRPGAKFFDWERKGVP
LRLEIGPRDAAAGAVTLARRMGGEKETVPAGNNFGHVIQKELEGCQASLL
SKAEERVSSRTFRVDTYEEMKARLREGGREEIGFFLAHWKDDKENEAKIK
EDCRATIRCYPLDLNGEGSMGARVGERKCFYSGEPATHIALFARAF*
back to top
Synonyms
Publications