jgi.p|Nanoce1779_2|577552, mRNA_518 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577552
Unique Name	mRNA_518
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2237
Alignment location	scaffold_3:1253918..1256154 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577638
Track	FilteredModels2
ProteinId	577552

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1253918..1256154 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577552	gene_518	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577552	mRNA_518-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_518	CDS_518	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1253918..1256154-
coding sequence from alignment at scaffold_3:1253918..1256154-

mRNA sequence

>mRNA_518 ID=mRNA_518|Name=jgi.p|Nanoce1779_2|577552|organism=Nannochloropsis oceanica|type=mRNA|length=2237bp
ACAGAGACCTACCCACGCATGCCGCCTCCGCCTATCCTGGGTGGCTTTCG
TCTCCTTATTGCCACCAGCGGCATGCTTCTCCTCCTGACTCGACGCCTGT
CCTTGACGGCCGCATTTGTCCCGAAACGCTGCCCCTCGACTCTCAACCGC
ATCCACTCCTCCCGCTCCCAATCCTCTTCCCACTCCTCCTCTTCCTCTTT
CAGGTCTTCTTCCTCCTTGTTTTCCCCCCATAGAAGAAGAAGTACCGGTG
CTTACCATTTGTTGAGCAGCACCACTTCTTCGGGCCCCGCGGTGGAGAGT
CTTCGAGCCGCGATTGGTGCTAAGGGCGATGAGATCCGTGCGTTAAAAGG
CAGCGGAGCCGACAAAGCAGCTCTTCAGCCGCTGATTACCGAATTGTTGG
GGCTTAAGAAGCAGTATGAAGAGGAGACAGGCGAACCGTTTGACCCGCCC
AAGGCCGGAGGTAGTGATGGAGGAGGAAAAAAGAAGAAGGCGAGTGGCGG
CAGCAGCAGCAGCAAAAAGAAAGTCAAGCCCAAGAACAACAACGGAGAAG
ACGACGACGGCATCATGATGCAATACGCAGATCGGGCCTCTCTTGTTATC
ACCCCACGAGATGAAAACTACTCGCAGTGGTACCTGGACGTGATTGCCGC
GGCTGATCTCGTTGATCAAAGCCCCGTGAAAGGCTGCATGGTAATCAAAC
CCTATGGCATGGCCTTGTGGGATGCTTTGAGGGAAGAACTCGACAAGCGA
ATCAAGGCCACAGGAGCTCAAAATGCGTATTTCCCCCTTTTCATCCCTCG
TTCTTTCCTGAGTAAGGAGGCTGAGCACGTGGATGGCTTCGCGAAGGAAT
GTGCTGTGGTCACACACCATCGCTTGTGCGCGGATCCCTCAGGTGCCCCT
GGATTGATCCCGGACCCGACTGCCAAACTGGAAGAGCCGTTGGTGGTGAG
ACCGACGTCGGAAACCGTTATTTGGAATATGTTTAGCAAGTGGATTGGCT
CCCACCGGGACTTGCCGTTGAAAATCAACCAATGGGCGAATGTCGTCAGG
TGGGAGATGCGGACGAGGCCATTTCTGCGGAGTGCCGAGTTTTTGTGGCA
GGAGGGGCATACGGCCCATGCGACACGGGAGGAGGCTTTGGTGTGCGCTA
AGGAACAGCTTGACTTGTACGCAAGCGTATGCGAGGACATGTTGGCTTTG
CCTGTGATCAAGGGGATAAAAAGCGAGACCGAGAGGTTCGCCGGGGCCGA
TGAAACCTTTACGATCGAGGCGTTGATGCAAAATGGATGGGCTTTACAAA
GCGGGACTAGCCATTTTTTGGGGCAGAATTTTGCACGGGCATTCGACGTG
TTTTTTCAGACGAAGGAGGGAGGGAGGGAGATGGTGTGGGCGACGAGTTG
GGGTGTGAGCACGCGGTTGATTGGTGCATTGGTGATGACGCACAGTGACG
ACAAGGGCCTAGTACTGCCCCCGTCGGTGGCGCCGGTGCAGGTGGTAGTT
GTGCCGATTGTGAAGGGGGCGGGAAGCGAGGAGGACGACCGTACGACGGC
GTTTGTGAATACGGTGGTGTCGGCGATGCGGACACAGGGGATAAGGGTCC
TTGTGGACGACCGGCCGAACATGAGACCAGGAGCCAAATTTTTCGATTGG
GAGAGGAAGGGCGTGCCATTGCGACTGGAGATAGGACCGAGGGACGCCGC
GGCGGGGGCGGTGACTTTGGCGAGGAGAATGGGGGGGGAGAAGGAAACGG
TGCCAGCGGGGAATAACTTCGGGCATGTGATCCAAAAGGAGCTGGAGGGT
TGCCAGGCATCGTTGCTGAGCAAAGCTGAAGAAAGGGTGTCTTCGCGTAC
GTTTCGAGTAGACACGTATGAGGAGATGAAGGCAAGGTTGCGGGAGGGAG
GGAGGGAGGAGATTGGGTTCTTCTTGGCTCACTGGAAGGATGATAAGGAG
AATGAGGCGAAGATAAAGGAGGACTGTCGGGCCACCATCAGGTGCTACCC
ACTTGATCTGAATGGGGAGGGATCGATGGGGGCGAGGGTGGGGGAGAGAA
AGTGTTTTTATTCGGGCGAACCAGCGACGCATATTGCCTTGTTTGCACGG
GCGTTTTAGAGGAAGGGAGGGATCGGGCGAGGGAGGGAGGGAGGGGTGAT
GTGTGTCGAGCATTGACAAGGCTTAGGGCAATCATGGATGGGGAGAATGA
AAGGAAACGACGTCAAAAAGAAAAAACGCACAGCAAC

protein sequence of jgi.p|Nanoce1779_2|577552

>mRNA_518-protein ID=mRNA_518-protein|Name=jgi.p|Nanoce1779_2|577552|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MPPPPILGGFRLLIATSGMLLLLTRRLSLTAAFVPKRCPSTLNRIHSSRS
QSSSHSSSSSFRSSSSLFSPHRRRSTGAYHLLSSTTSSGPAVESLRAAIG
AKGDEIRALKGSGADKAALQPLITELLGLKKQYEEETGEPFDPPKAGGSD
GGGKKKKASGGSSSSKKKVKPKNNNGEDDDGIMMQYADRASLVITPRDEN
YSQWYLDVIAAADLVDQSPVKGCMVIKPYGMALWDALREELDKRIKATGA
QNAYFPLFIPRSFLSKEAEHVDGFAKECAVVTHHRLCADPSGAPGLIPDP
TAKLEEPLVVRPTSETVIWNMFSKWIGSHRDLPLKINQWANVVRWEMRTR
PFLRSAEFLWQEGHTAHATREEALVCAKEQLDLYASVCEDMLALPVIKGI
KSETERFAGADETFTIEALMQNGWALQSGTSHFLGQNFARAFDVFFQTKE
GGREMVWATSWGVSTRLIGALVMTHSDDKGLVLPPSVAPVQVVVVPIVKG
AGSEEDDRTTAFVNTVVSAMRTQGIRVLVDDRPNMRPGAKFFDWERKGVP
LRLEIGPRDAAAGAVTLARRMGGEKETVPAGNNFGHVIQKELEGCQASLL
SKAEERVSSRTFRVDTYEEMKARLREGGREEIGFFLAHWKDDKENEAKIK
EDCRATIRCYPLDLNGEGSMGARVGERKCFYSGEPATHIALFARAF*

mRNA from alignment at scaffold_3:1253918..1256154-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_518 ID=mRNA_518|Name=jgi.p|Nanoce1779_2|577552|organism=Nannochloropsis oceanica|type=mRNA|length=2237bp|location=Sequence derived from alignment at scaffold_3:1253918..1256154- (Nannochloropsis oceanica)
ACAGAGACCTACCCACGCATGCCGCCTCCGCCTATCCTGGGTGGCTTTCG
TCTCCTTATTGCCACCAGCGGCATGCTTCTCCTCCTGACTCGACGCCTGT
CCTTGACGGCCGCATTTGTCCCGAAACGCTGCCCCTCGACTCTCAACCGC
ATCCACTCCTCCCGCTCCCAATCCTCTTCCCACTCCTCCTCTTCCTCTTT
CAGGTCTTCTTCCTCCTTGTTTTCCCCCCATAGAAGAAGAAGTACCGGTG
CTTACCATTTGTTGAGCAGCACCACTTCTTCGGGCCCCGCGGTGGAGAGT
CTTCGAGCCGCGATTGGTGCTAAGGGCGATGAGATCCGTGCGTTAAAAGG
CAGCGGAGCCGACAAAGCAGCTCTTCAGCCGCTGATTACCGAATTGTTGG
GGCTTAAGAAGCAGTATGAAGAGGAGACAGGCGAACCGTTTGACCCGCCC
AAGGCCGGAGGTAGTGATGGAGGAGGAAAAAAGAAGAAGGCGAGTGGCGG
CAGCAGCAGCAGCAAAAAGAAAGTCAAGCCCAAGAACAACAACGGAGAAG
ACGACGACGGCATCATGATGCAATACGCAGATCGGGCCTCTCTTGTTATC
ACCCCACGAGATGAAAACTACTCGCAGTGGTACCTGGACGTGATTGCCGC
GGCTGATCTCGTTGATCAAAGCCCCGTGAAAGGCTGCATGGTAATCAAAC
CCTATGGCATGGCCTTGTGGGATGCTTTGAGGGAAGAACTCGACAAGCGA
ATCAAGGCCACAGGAGCTCAAAATGCGTATTTCCCCCTTTTCATCCCTCG
TTCTTTCCTGAGTAAGGAGGCTGAGCACGTGGATGGCTTCGCGAAGGAAT
GTGCTGTGGTCACACACCATCGCTTGTGCGCGGATCCCTCAGGTGCCCCT
GGATTGATCCCGGACCCGACTGCCAAACTGGAAGAGCCGTTGGTGGTGAG
ACCGACGTCGGAAACCGTTATTTGGAATATGTTTAGCAAGTGGATTGGCT
CCCACCGGGACTTGCCGTTGAAAATCAACCAATGGGCGAATGTCGTCAGG
TGGGAGATGCGGACGAGGCCATTTCTGCGGAGTGCCGAGTTTTTGTGGCA
GGAGGGGCATACGGCCCATGCGACACGGGAGGAGGCTTTGGTGTGCGCTA
AGGAACAGCTTGACTTGTACGCAAGCGTATGCGAGGACATGTTGGCTTTG
CCTGTGATCAAGGGGATAAAAAGCGAGACCGAGAGGTTCGCCGGGGCCGA
TGAAACCTTTACGATCGAGGCGTTGATGCAAAATGGATGGGCTTTACAAA
GCGGGACTAGCCATTTTTTGGGGCAGAATTTTGCACGGGCATTCGACGTG
TTTTTTCAGACGAAGGAGGGAGGGAGGGAGATGGTGTGGGCGACGAGTTG
GGGTGTGAGCACGCGGTTGATTGGTGCATTGGTGATGACGCACAGTGACG
ACAAGGGCCTAGTACTGCCCCCGTCGGTGGCGCCGGTGCAGGTGGTAGTT
GTGCCGATTGTGAAGGGGGCGGGAAGCGAGGAGGACGACCGTACGACGGC
GTTTGTGAATACGGTGGTGTCGGCGATGCGGACACAGGGGATAAGGGTCC
TTGTGGACGACCGGCCGAACATGAGACCAGGAGCCAAATTTTTCGATTGG
GAGAGGAAGGGCGTGCCATTGCGACTGGAGATAGGACCGAGGGACGCCGC
GGCGGGGGCGGTGACTTTGGCGAGGAGAATGGGGGGGGAGAAGGAAACGG
TGCCAGCGGGGAATAACTTCGGGCATGTGATCCAAAAGGAGCTGGAGGGT
TGCCAGGCATCGTTGCTGAGCAAAGCTGAAGAAAGGGTGTCTTCGCGTAC
GTTTCGAGTAGACACGTATGAGGAGATGAAGGCAAGGTTGCGGGAGGGAG
GGAGGGAGGAGATTGGGTTCTTCTTGGCTCACTGGAAGGATGATAAGGAG
AATGAGGCGAAGATAAAGGAGGACTGTCGGGCCACCATCAGGTGCTACCC
ACTTGATCTGAATGGGGAGGGATCGATGGGGGCGAGGGTGGGGGAGAGAA
AGTGTTTTTATTCGGGCGAACCAGCGACGCATATTGCCTTGTTTGCACGG
GCGTTTTAGAGGAAGGGAGGGATCGGGCGAGGGAGGGAGGGAGGGGTGAT
GTGTGTCGAGCATTGACAAGGCTTAGGGCAATCATGGATGGGGAGAATGA
AAGGAAACGACGTCAAAAAGAAAAAACGCACAGCAAC

Coding sequence (CDS) from alignment at scaffold_3:1253918..1256154-

>mRNA_518 ID=mRNA_518|Name=jgi.p|Nanoce1779_2|577552|organism=Nannochloropsis oceanica|type=CDS|length=2091bp|location=Sequence derived from alignment at scaffold_3:1253918..1256154- (Nannochloropsis oceanica)
ATGCCGCCTCCGCCTATCCTGGGTGGCTTTCGTCTCCTTATTGCCACCAG
CGGCATGCTTCTCCTCCTGACTCGACGCCTGTCCTTGACGGCCGCATTTG
TCCCGAAACGCTGCCCCTCGACTCTCAACCGCATCCACTCCTCCCGCTCC
CAATCCTCTTCCCACTCCTCCTCTTCCTCTTTCAGGTCTTCTTCCTCCTT
GTTTTCCCCCCATAGAAGAAGAAGTACCGGTGCTTACCATTTGTTGAGCA
GCACCACTTCTTCGGGCCCCGCGGTGGAGAGTCTTCGAGCCGCGATTGGT
GCTAAGGGCGATGAGATCCGTGCGTTAAAAGGCAGCGGAGCCGACAAAGC
AGCTCTTCAGCCGCTGATTACCGAATTGTTGGGGCTTAAGAAGCAGTATG
AAGAGGAGACAGGCGAACCGTTTGACCCGCCCAAGGCCGGAGGTAGTGAT
GGAGGAGGAAAAAAGAAGAAGGCGAGTGGCGGCAGCAGCAGCAGCAAAAA
GAAAGTCAAGCCCAAGAACAACAACGGAGAAGACGACGACGGCATCATGA
TGCAATACGCAGATCGGGCCTCTCTTGTTATCACCCCACGAGATGAAAAC
TACTCGCAGTGGTACCTGGACGTGATTGCCGCGGCTGATCTCGTTGATCA
AAGCCCCGTGAAAGGCTGCATGGTAATCAAACCCTATGGCATGGCCTTGT
GGGATGCTTTGAGGGAAGAACTCGACAAGCGAATCAAGGCCACAGGAGCT
CAAAATGCGTATTTCCCCCTTTTCATCCCTCGTTCTTTCCTGAGTAAGGA
GGCTGAGCACGTGGATGGCTTCGCGAAGGAATGTGCTGTGGTCACACACC
ATCGCTTGTGCGCGGATCCCTCAGGTGCCCCTGGATTGATCCCGGACCCG
ACTGCCAAACTGGAAGAGCCGTTGGTGGTGAGACCGACGTCGGAAACCGT
TATTTGGAATATGTTTAGCAAGTGGATTGGCTCCCACCGGGACTTGCCGT
TGAAAATCAACCAATGGGCGAATGTCGTCAGGTGGGAGATGCGGACGAGG
CCATTTCTGCGGAGTGCCGAGTTTTTGTGGCAGGAGGGGCATACGGCCCA
TGCGACACGGGAGGAGGCTTTGGTGTGCGCTAAGGAACAGCTTGACTTGT
ACGCAAGCGTATGCGAGGACATGTTGGCTTTGCCTGTGATCAAGGGGATA
AAAAGCGAGACCGAGAGGTTCGCCGGGGCCGATGAAACCTTTACGATCGA
GGCGTTGATGCAAAATGGATGGGCTTTACAAAGCGGGACTAGCCATTTTT
TGGGGCAGAATTTTGCACGGGCATTCGACGTGTTTTTTCAGACGAAGGAG
GGAGGGAGGGAGATGGTGTGGGCGACGAGTTGGGGTGTGAGCACGCGGTT
GATTGGTGCATTGGTGATGACGCACAGTGACGACAAGGGCCTAGTACTGC
CCCCGTCGGTGGCGCCGGTGCAGGTGGTAGTTGTGCCGATTGTGAAGGGG
GCGGGAAGCGAGGAGGACGACCGTACGACGGCGTTTGTGAATACGGTGGT
GTCGGCGATGCGGACACAGGGGATAAGGGTCCTTGTGGACGACCGGCCGA
ACATGAGACCAGGAGCCAAATTTTTCGATTGGGAGAGGAAGGGCGTGCCA
TTGCGACTGGAGATAGGACCGAGGGACGCCGCGGCGGGGGCGGTGACTTT
GGCGAGGAGAATGGGGGGGGAGAAGGAAACGGTGCCAGCGGGGAATAACT
TCGGGCATGTGATCCAAAAGGAGCTGGAGGGTTGCCAGGCATCGTTGCTG
AGCAAAGCTGAAGAAAGGGTGTCTTCGCGTACGTTTCGAGTAGACACGTA
TGAGGAGATGAAGGCAAGGTTGCGGGAGGGAGGGAGGGAGGAGATTGGGT
TCTTCTTGGCTCACTGGAAGGATGATAAGGAGAATGAGGCGAAGATAAAG
GAGGACTGTCGGGCCACCATCAGGTGCTACCCACTTGATCTGAATGGGGA
GGGATCGATGGGGGCGAGGGTGGGGGAGAGAAAGTGTTTTTATTCGGGCG
AACCAGCGACGCATATTGCCTTGTTTGCACGGGCGTTTTAG

Synonyms

Publications