jgi.p|Nanoce1779_2|591333, gene_5083 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591333
Unique Namegene_5083
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_12:414300..415593 -

Link to JBrowse

Properties
Property NameValue
TranscriptId591419
ProteinId591333
Product nameWD40 repeat-like protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:414300..415593 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL010ncniL010Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01930NO11G01930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591333mRNA_5083-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591333mRNA_5083Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|591333

>mRNA_5083-protein ID=mRNA_5083-protein|Name=jgi.p|Nanoce1779_2|591333|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MSLKRRAVLAGHTDRVWHVAWSPCGKYLASCGGDRAVRVWGAPTSQQGSN
ADPAADATQAPAVPVEWRLLATLEDGQTRTVRCCEWSPCGRLLAAVSFDA
TCVIWELQPAGGRAAGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSR
DKSVWIWECLQDNDFECLSVLHGHEQDVKFVRFHPREDVLFSASYDDTLK
VWQEEDDDWACVATLKGHTSTVWGLSIGSRDDGLVSCSDDGSLIIWKAAN
GEGNYDKWRIVSKLEGQQNKATVYSVDWSRESGAIASGGADDSIRVFAED
LEQPQGWALDSPSFVCEAHVEKAHEADVNCVRWNPVKPWLLASAGDDQVV
SVWEFRRSGE*
back to top
Synonyms
Publications