NO11G01930, NO11G01930 (gene) Nannochloropsis oceanica

Overview
NameNO11G01930
Unique NameNO11G01930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1083
Alignment locationchr11:629907..630989 -

Link to JBrowse

Properties
Property NameValue
DescriptionTransducin/WD40 repeat-like superfamily protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:629907..630989 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
GO:0016043cellular component organization
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0097361CIA complex
GO:0005829cytosol
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR028608CIAO1/Cia1
IPR001680WD40_repeat
Homology
BLAST of NO11G01930 vs. NCBI_GenBank
Match: EWM25016.1 (putative cytosolic iron-sulfur protein assembly protein ciao1 [Nannochloropsis gaditana])

HSP 1 Score: 516.5 bits (1329), Expect = 6.500e-143
Identity = 293/367 (79.84%), Postives = 315/367 (85.83%), Query Frame = 0
Query:    1 MSLKRRAVLAGHTDRVWHVAWSPCGKYLASCGGDRAVRVWGAPTSQQGSNADPAA---DATQAPAVPVE----WRLLATLEDGQTRTVRCCEWSPCGRLLAAVSFDATCVIWELQPAGGRAAGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSRDKSVWIWECLQDNDFECLSVLHGHEQDVKFVRFHPREDVLFSASYDDTLKVWQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGEGNYDKWRIVSKLEGQQNKATVYSVDWSRESGAIASGGADDSIRVFAEDLEQPQGWALDSPSFVCEAHVEKAHEADVNCVRWNPVKPWLLASAGDDQVVSVWEFRRSGE 361
            MSLKR +VL GHTDRVWHV+WSPCG+YLASCGGDRA+RVWGAPT   G   D      D  +  A   E    WRLLATL DGQTRTVRCCEWSPCG +LAAVSFD+TCVIWELQP+  +A  EMEWEL ASVEGHEHEAK VAWNRGGTLLATCSRDKSVWIWECLQDNDFECLSVLHGH+QDVKFVRFHPREDVLFSASYDDTLKVW+EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  G G YDKWR +++LE    KATVYSVDWSRESGAIASGGADD+IR++ ED+E PQGWALD+PSFVCEA V  AH+ADVNCVRWNPV+P LLASAGDDQ V +W FRR GE
Sbjct:    1 MSLKRLSVLTGHTDRVWHVSWSPCGRYLASCGGDRAIRVWGAPTLSSGPRTDQDGDKDDRNEEEAGQEEGGGTWRLLATLGDGQTRTVRCCEWSPCGNMLAAVSFDSTCVIWELQPSRAQAGREMEWELAASVEGHEHEAKCVAWNRGGTLLATCSRDKSVWIWECLQDNDFECLSVLHGHDQDVKFVRFHPREDVLFSASYDDTLKVWEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGRYDKWRQLTRLEA-PGKATVYSVDWSRESGAIASGGADDAIRIYVEDVEDPQGWALDTPSFVCEADVPGAHDADVNCVRWNPVRPDLLASAGDDQAVRIWSFRRRGE 366          
BLAST of NO11G01930 vs. NCBI_GenBank
Match: GBG33095.1 (Protein CIA1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 268.9 bits (686), Expect = 2.400e-68
Identity = 185/363 (50.96%), Postives = 234/363 (64.46%), Query Frame = 0
Query:    9 LAGHTDRVWHVAWSPCGKYLASCGGDRAVRVWGAPTSQQGS-----NADPAADATQAPAVPVEWRLLATLEDGQTRTVRCCEWSPCGRLLAAVSFDATCVIWEL--QPAGGRAAGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSRDKSVWIWEC-----------LQDNDFECLSVLHGHEQDVKFVRFHPREDVLFSASYDDTLKVWQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGEGNYDKWRIVSKLEGQQNKATVYSVDWSRESGAIASGGADDSIRVFAEDLEQPQGWALDSPSFVCEAHVEKAHEADVNCVRWNPVKPWLLASAGDDQVVSVW 354
            L GH DRVWHVAWSPCGK LASCG D+++RVW       G+        PA D         EW  +ATLED Q+RTVR CE+SPCG  LAA SFDAT VIW+   + A   +    EWE  + +EGHE+E KSVAW+  G+++ATCSRDKS+WIWE             +D + EC+SVL GH QDVK +R+HP E VLF+ASYDDT++VW E      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + +G +   +++ ++    ++ T++S+DWSR+   IA+G  DD+I V     +      +    F     +  AH+ DVNCVRWNP    +LASAGDD  V ++
Sbjct:   24 LKGHDDRVWHVAWSPCGKLLASCGADKSIRVWAKSPKAPGAXXXXXXXSPAED---------EWLCVATLEDTQSRTVRSCEFSPCGSYLAAASFDATVVIWQRGHREADDGSGAIEEWECVSVLEGHENEVKSVAWSADGSMIATCSRDKSIWIWEAPPATTPQARLPEEDIECECISVLTGHSQDVKHLRWHPTEPVLFTASYDDTIRVWAE-QVDDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSDKGTWACDKVLDEI----HERTIFSIDWSRDGSRIATGAGDDAIAVLEASSD------VVGSDFSVTRKLLAAHDTDVNCVRWNPQDSHILASAGDDGFVKLF 366          
BLAST of NO11G01930 vs. NCBI_GenBank
Match: XP_009032835.1 (hypothetical protein AURANDRAFT_3752, partial [Aureococcus anophagefferens] >EGB12302.1 hypothetical protein AURANDRAFT_3752, partial [Aureococcus anophagefferens])

HSP 1 Score: 219.9 bits (559), Expect = 1.300e-53
Identity = 130/351 (37.04%), Postives = 162/351 (46.15%), Query Frame = 0
Query:   15 RVWHVAWSPCGKYLASCGGDRAVRVWGAPTSQQGSNADPAADATQAPAVPVEWRLLATLEDGQTRTVRCCEWSPCGRLLAAVSFDATC---VIWELQPAGGRAAGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSRDKSVWIWECLQDNDFECLSVLHGHEQDVKFVRFHP-----REDVLFSASYDDTLKVWQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGEGNYDKWRIVSKLEGQQNKATVYSVD--WSRESGAIASGGADDSIRVFAEDLEQPQGWALDSPSFVCEAHVEKAHEADVNCVRWNPVKPWLLASAGDDQVVSVWEF 356
            RVWH AWSP G  LASC  DR V++W                          W L++TL+D   RTVR C+WSPCGR LAAVSFD TC                  +EWE+ A++EGHE+E K  AWN   TLLATC RDKSVW+WE   D  FE +SVLHGH  DVK V F        +D+L S SYDD++K+W +                                               EG    W + + LE    +  VYS D      +  +ASGG DD + V+                F   A   KAH+ DVN VRW+P    LLA+AGDD +V +W+F
Sbjct:    1 RVWHAAWSPDGSLLASCSSDRCVKIWHCAGG--------------------AWGLVSTLDDAHERTVRKCDWSPCGRYLAAVSFDGTCXXXXXXXXXXXXXXXXXPLEWEIIATLEGHENEVKGAAWNASATLLATCGRDKSVWLWEFGDDEGFELVSVLHGHGGDVKAVCFDACSRLRDDDLLASCSYDDSIKLWGDDGDDWSCRATLAGSGSTVWDLRFVAAPDGSRRLVSCGADRVLRLW-VEGEPHAWTVGAALENAHGRC-VYSCDAVGPDPTTRVASGGGDDRVSVYGL-----------GAGFARLADAPKAHDGDVNSVRWSPADATLLATAGDDALVKIWKF 318          
BLAST of NO11G01930 vs. NCBI_GenBank
Match: BAG61458.1 (unnamed protein product [Homo sapiens])

HSP 1 Score: 192.6 bits (488), Expect = 2.100e-45
Identity = 155/369 (42.01%), Postives = 201/369 (54.47%), Query Frame = 0
Query:    3 LKRRAVLAG----HTD-RVWHVAWSPCGKYLASCGGDRAVRVWGAPTSQQGSNADPAADATQAPAVPVEWRLLATLEDGQTRTVRCCEWSPCGRLLAAVSFDATCVIWELQPAGGRAAGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSRDKSVWIWECLQDNDFECLSVLHGHEQDVKFVRFHPREDVLFSASYDDTLKVWQ--------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGEGNYDKWRIVSKLEGQQNKATVYSVDWSRESGAIASGGADDSIRVFAED-LEQPQGWALDSPSFVCEAHVEKAHEADVNCVRWNPVKPWLLASAGDDQVVSVWEFRR 358
            +K   VL G    H D R W +AW+P G  LASCGGDR +R+WG     +G +                W   + L +G  RTVR   WSPCG  LA+ SFDAT                                             TCSRDKSVW+WE  +++++EC+SVL+ H QDVK V +HP +++L SASYDDT+K+++         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            G+   W+ +  L G  ++ T+Y + W + +GA+A+   DD+IRVF ED    PQ      P+F    H+ +AH  DVNCV WNP +P LLAS  DD  V+ W+++R
Sbjct:    1 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGT----EGDS----------------WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT---------------------------------------------TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLPGNEQGVACSGSDPSWKCICTLSGFHSR-TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ-----QPTFSLTTHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 298          
BLAST of NO11G01930 vs. NCBI_GenBank
Match: XP_002294446.1 (WD40-repeat protein [Thalassiosira pseudonana CCMP1335] >EED88280.1 WD40-repeat protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 186.0 bits (471), Expect = 2.000e-43
Identity = 125/401 (31.17%), Postives = 188/401 (46.88%), Query Frame = 0
Query:   17 WHVAWSPCGKYLASCGG--DRAVRVW--------------------GAPTSQQGS-NADPAADA--TQAPAVPVEWRLLATLEDGQTRTVRCCEWSPCGR-----LLAAVSFDATCVIWELQPAGGRAAGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSRDKSVWIWECL---------------QDNDFECLSVLHGHEQDVKFVRF---HPR----EDVLFSASYDDTLKVWQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGEGNYDKWRIVSKLEGQQ---NKATVYSVD--WSRESGAIASGGADDSIRVFAEDL-EQPQGWALDSPSFVCEAHVEKAHEADVNCVRWNPVKPWLLASAGDDQVVSVWEFRRSG 360
            W  ++S  GKYLA C G  D  ++VW                    G+  + +GS   D   D   T++    VEW+L+AT+ +G +RT+R   ++P        +LA+ SFD   +IWE             +E  A +EGHE+E K +AWN+ G+LLA+C RDK++WIWEC                 + +FECL+VL GHE DVK + F   H +    +++L SASYD+++KVW E                                             + +G+   W++ +  E ++    +  V S D  W+   G IASGG D+ I+++ E+      G + D+P F  EA V  AH+ DVNCV+W P     L S GDD  V +W++  +G
Sbjct:   29 WQASFSIDGKYLAVCFGNPDTCIKVWEYLGKNSVDTVTTHNGVVGVGSDATSKGSKTVDCCTDINNTKSNTNHVEWKLIATIREGHSRTIRSVAFAPTSSTLGVPILASASFDGKVLIWE---HFADEENHGTFEPIAQLEGHENEIKHLAWNQTGSLLASCGRDKTIWIWECFLPGTVGGSASXXXXXDEGEFECLAVLQGHEGDVKSIAFALSHGQWGEGDEILLSASYDNSIKVWAE------------ESGDWYCAATLAVHTSTVWCLGINPGGVRFLSGSEDGSMAIWKMYTATERKRLFPREHAVSSTDGLWNSGHGRIASGGGDNCIQIYREETGGSGAGSSSDAPKFAIEAMVINAHDGDVNCVKWYPRVGTSLVSCGDDGAVRIWKYSLAG 414          
BLAST of NO11G01930 vs. NCBI_GenBank
Match: CUG87711.1 (WD40 repeat-containing protein, putative [Bodo saltans])

HSP 1 Score: 183.0 bits (463), Expect = 1.700e-42
Identity = 124/379 (32.72%), Postives = 163/379 (43.01%), Query Frame = 0
Query:    1 MSLKRRAVLAGHTDRVWHVAWSPCGKYLASCGGDRAVRVWGAPTSQQGSNADPAADATQAPAVPVEWRLLATLEDGQTRTVRCCEWSPCGRLLAAVSFDATCVIWELQPAGG-----RAAGEMEWELTASVEGHEHEAKSVAWNRGGT-LLATCSRDKSVWIWECL--QDNDFECLSVLHGHEQDVKFVRFHP------REDVLFSASYDDTLKVWQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNG-----EGNYDKWRIVSKLEGQQNKATVYSVDWSRESGAIASGGADDSIRVFAEDLEQPQGWALDSPS---FVCEAHVEKAHEADVNCVRWNP----VKPWLLASAGDDQVVSVW 354
            + ++R A L GH DRVW VAW P    LASC GD+ V++W    S    + D            V W L+ TLE    RTVR  EWSP G  L+  SFD+T  IW+L    G          +  E+ A +EGHE+E K   W  G   L+ATCSRDK+VW+WE    ++ +FEC  VL GH QDVK VR+ P      +   L S SYD T+K+W+E                                                    +  +  W  V  +    +   ++SVDW       ASG    +I  F           +   S   +     +  AHEADVN VR+ P       W  ASAGDD VV++W
Sbjct:   38 LHVERIAALIGHEDRVWSVAWHPTLPLLASCSGDKTVKLWSPSRSSSSESGD------------VTWALVTTLEGEHQRTVRHVEWSPNGLHLSCSSFDSTVTIWKLDVPSGDEEQTTQLNHISLEVEAVLEGHENEVKCCTWAEGSNDLVATCSRDKTVWVWERADPEEPEFECGGVLSGHSQDVKSVRWLPASVMPSKRRSLLSCSYDGTMKLWEENPKRRDDWHCTQTLTHGELGTVWEAALEPSSSASNSRRICAATEGGALRLWRQNEHGMWAKVGDV--SISDRPLFSVDWQGPLVVAASGDNHIAIIHFPTVATSSSSAVVGDGSPLEYEIVGTLTDAHEADVNTVRFAPFVEGATSWTFASAGDDGVVNLW 402          
BLAST of NO11G01930 vs. NCBI_GenBank
Match: XP_002176741.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51204.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 182.2 bits (461), Expect = 2.900e-42
Identity = 128/380 (33.68%), Postives = 169/380 (44.47%), Query Frame = 0
Query:   17 WHVAWSPCGKYLASCGG--DRAVRVWGAPTSQQGSNADPAADATQAPAVPVEWRLLATLEDGQTRTVRCCEWSPCGR--LLAAVSFDATCVIWELQPAGGRA---------AGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSRDKSVWIWECL------QDNDFECLSVLHGHEQDVKFVRFHPRED-------VLFSASYDDTLKVWQ------------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGEGNYDKWRIVSKLEGQQNKATVYSVDWSRE---SGAIASGGADDSIRVFAEDLEQPQGWALDSPSFVCEAHVEKAHEADVNCVRWNPVKPWLLASAGDDQVVSVWEF 356
            W VA+S  G+YLA C G  +  VR+W     QQ    + +            W L ATL   QTRT+R   ++P     +LA+ SFD T  +WE  PA   A         +G  EWE TA +EGHE E K V WN  G+LLA+C RDK+VWIWEC          DFEC++VLHGHE DVK V+F    D       +L S+SYD+T+K W             E                                              G+     W+ V  L    + A+++SV ++      G IA+ GAD+ I++F E      G   D P F  E         DVNCV W+P    +LA+AGDD  V +W+F
Sbjct:    4 WQVAFSRDGRYLAVCYGAIEPCVRIW----KQQSPFHEDSG-----------WILDATLTGIQTRTIRSIAFAPIRTPLILASASFDGTVAVWEHYPATNGALVTASAKSPSGVDEWECTAQLEGHESEVKCVQWNATGSLLASCGRDKTVWIWECFLPGHNSGGGDFECIAVLHGHEGDVKCVQFTSSHDEWGDGDEILLSSSYDNTIKCWAEDAGDWYCAASIEDVHSSTIWSLAMSPSGLRMISGSDDQSLGIYKCYTASEKKRHFPDEGKNRNGLWKCVGHLP-DAHLASIFSVAYAPSRAGHGRIATAGADNRIQIFRE----VSGSVSDQPLFTVETSATN-ELGDVNCVSWHPSDGSILATAGDDGSVCIWKF 362          
BLAST of NO11G01930 vs. NCBI_GenBank
Match: KZO92040.1 (WD40 repeat-like protein [Calocera viscosa TUFC12733])

HSP 1 Score: 180.3 bits (456), Expect = 1.100e-41
Identity = 159/369 (43.09%), Postives = 212/369 (57.45%), Query Frame = 0
Query:    2 SLKRRAVLAGHTDRVWHVAWSPCGKYLASCGGDRAVRVWGAPTSQQGSNADPAADATQAPAVPVEWRLLATLEDGQTRTVRCCEWSPCGRLLAAVSFDATCVIWELQPA-----GGRAAGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSRDKSVWIWECLQDNDFECLSVLHGHEQDVKFVRFHPREDVLFSASYDDTLKVWQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGEGNYDKWRIVSKLEGQQNKATVYSVDW---SRESGAIASGGADDSIRVFAEDLEQPQGWALD-SPSFVCEAHV----EKAH-EADVNCVRWNPVKPW--LLASAGDDQVVSVWE 355
            S+++ A L GH DR W +AW+P    +ASC  D+ VR++   +S                 +P ++ L  ++  G T+TVR   WSP G++L   SFD++ ++WE QP       G A G  EWE    +EG E E K VA++R G  LATCSRDK+VW++    D D+E  SVL  H QDVK + +HP+ED+L S+SYDDT+K++ +      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        W+ V  +EG   + ++YSV W   S E G +ASG  D  I +          W +  +P    +A +    E +H  +DVN V W P      LL S GDD  + VW+
Sbjct:    3 SIEQIAELTGHIDRAWQLAWNPVESLVASCSTDKTVRIYAYTSS----------------PIP-KFTLTTSISTGHTKTVRTLAWSPDGKVLGTGSFDSSIILWERQPVDEEEDSGGAGG--EWESITRIEGPESECKCVAFSRSGEFLATCSRDKTVWVFSIYPD-DYEVSSVLMEHTQDVKCIAWHPKEDILASSSYDDTIKLYHD----DHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQAVKIIEGMHER-SIYSVAWGVGSGELGWLASGAGDGRINI----------WHMSRTPDAAIQARLIATQENSHGVSDVNAVAWCPRAGCANLLGSTGDDGSLRVWQ 336          
BLAST of NO11G01930 vs. NCBI_GenBank
Match: KZT61731.1 (WD40 repeat-like protein [Calocera cornea HHB12733])

HSP 1 Score: 179.9 bits (455), Expect = 1.400e-41
Identity = 158/366 (43.17%), Postives = 211/366 (57.65%), Query Frame = 0
Query:    2 SLKRRAVLAGHTDRVWHVAWSPCGKYLASCGGDRAVRVWGAPTSQQGSNADPAADATQAPAVPVEWRLLATLEDGQTRTVRCCEWSPCGRLLAAVSFDATCVIWELQPAGGR---AAGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSRDKSVWIWECLQDNDFECLSVLHGHEQDVKFVRFHPREDVLFSASYDDTLKVWQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGEGNYDKWRIVSKLEGQQNKATVYSVDW---SRESGAIASGGADDSIRVFAEDLEQPQGWALDSPSFVCEAHVEKAH-EADVNCVRWNPVK--PWLLASAGDDQVVSVWEFRRS 359
            S+++ A L GH DR W +AW+P    +ASC  D+ VR++                +  A  VP  +   A++  G T+TVR   WSP G LL   SFD++ ++WE QP       A    EWE    +EG E E K VA++R G  LATCSRDK+VW++    D D+E  SVL  H QDVK V +HP+ED+L S+SYDDT+K++ +      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        W+ V  L+G   + ++YSV W   S + G +ASG  D  I V+   + +  G ++++     +   E +H  +DVN V W P      LL S GDD  + +W+   S
Sbjct:    4 SIEQIAELTGHIDRAWQLAWNPGEPIVASCSTDKTVRIY----------------SYTASPVPT-FAFSASISTGHTKTVRTLAWSPDGTLLGTGSFDSSIILWERQPVDEEEDDAGVGGEWESITRIEGPESECKCVAFSRSGEFLATCSRDKTVWVFSIYPD-DYEVSSVLMEHTQDVKCVAWHPKEDILASSSYDDTIKLYHD----DHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQTVEVLQGVHER-SIYSVSWGVGSGDLGWLASGAGDGRINVW--HMSRTPGASIEARLIATQ---ENSHGVSDVNAVSWCPRDGCAHLLGSTGDDGSLRIWQINMS 341          
BLAST of NO11G01930 vs. NCBI_GenBank
Match: OCB90511.1 (hypothetical protein A7U60_g2245 [Sanghuangporus baumii])

HSP 1 Score: 179.5 bits (454), Expect = 1.900e-41
Identity = 150/378 (39.68%), Postives = 197/378 (52.12%), Query Frame = 0
Query:    3 LKRRAVLAGHTDRVWHVAWSPCGKYLASCGGDRAVRVWGAPTSQQGSNADPAADATQAPAVPVEWRLLATLEDGQTRTVRCCEWSPCGRLLAAVSFDATCVIWELQPA---------------GGRAAGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSRDKSVWIWECLQDNDFECLSVLHGHEQDVKFVRFHPREDVLF--SASYDDTLKVWQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGEGNYDKWRIVSKLEGQ-QNKATVYSVDWSR------------ESGAIASGGADDSIRVFAEDLEQPQGWALDSPSFVCEAHVEKAH-EADVNCVRWNPVKPW--LLASAGDD 348
            L + A L GH DRVW +AW+P    LASC GD++VRV+    S +  + D +          V++ L A+++ G  +TVRC  W+P G+  A  SFD+   +WE + A                       EWE  + +EGHE E KSVA++  GTLLA+CSRDK+VW+WE   D+DFEC+ VL  H QDVK V +HP E+V F               XXXXXXXXXXXXXXXXXXXXXXXXXXXX                   +G   KW     L G   ++ +VYSV WS+              G +AS G D  I V+  D+++    ++ +        VE AH   DVNC+ W P + +  LLASAGDD
Sbjct:    8 LSQIAELTGHEDRVWCIAWNPVRPLLASCSGDKSVRVYHYKKSYR-VDMDSSPSQIDDDDENVKFELQASVQTGHAKTVRCVAWAPSGKTFATASFDSNIAVWEQEGAXXXXXXXXXXXXXXXXXXXXXXXEWECASLLEGHETECKSVAYSSTGTLLASCSRDKTVWVWEVQPDSDFECMGVLMAHTQDVKCVAWHPNEEVKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEYLASASDDRTVRIWRRVKGERWKWEEAFVLSGTGVHERSVYSVSWSKGLMMGTGNGQEESKGWLASAGGDGRINVW--DIQKRADNSIHASLITM---VENAHGVCDVNCISWCPREGFEDLLASAGDD 379          
The following BLAST results are available for this feature:
BLAST of NO11G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25016.16.500e-14379.84putative cytosolic iron-sulfur protein assembly pr... [more]
GBG33095.12.400e-6850.96Protein CIA1 [Aurantiochytrium sp. FCC1311][more]
XP_009032835.11.300e-5337.04hypothetical protein AURANDRAFT_3752, partial [Aur... [more]
BAG61458.12.100e-4542.01unnamed protein product [Homo sapiens][more]
XP_002294446.12.000e-4331.17WD40-repeat protein [Thalassiosira pseudonana CCMP... [more]
CUG87711.11.700e-4232.72WD40 repeat-containing protein, putative [Bodo sal... [more]
XP_002176741.12.900e-4233.68predicted protein, partial [Phaeodactylum tricornu... [more]
KZO92040.11.100e-4143.09WD40 repeat-like protein [Calocera viscosa TUFC127... [more]
KZT61731.11.400e-4143.17WD40 repeat-like protein [Calocera cornea HHB12733... [more]
OCB90511.11.900e-4139.68hypothetical protein A7U60_g2245 [Sanghuangporus b... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002068NSK002068Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01930.1NO11G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591333gene_5083Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100068g3gene5476Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01930.1NO11G01930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01930 ID=NO11G01930|Name=NO11G01930|organism=Nannochloropsis oceanica|type=gene|length=1083bp
ATGTCCCTAAAGCGACGAGCCGTCCTTGCAGGACACACGGACCGCGTATG
GCACGTAGCATGGAGTCCGTGCGGCAAGTATTTGGCTTCTTGCGGGGGCG
ACAGGGCAGTTCGCGTTTGGGGGGCGCCGACCTCGCAGCAGGGCTCCAAC
GCTGACCCCGCTGCAGATGCCACTCAAGCACCAGCCGTACCCGTGGAGTG
GCGGCTTCTCGCTACGTTGGAAGATGGACAGACGCGTACGGTACGGTGCT
GTGAGTGGTCGCCGTGTGGGAGGCTGCTGGCGGCCGTGAGCTTTGATGCC
ACGTGCGTTATTTGGGAGCTGCAACCGGCGGGAGGCCGGGCGGCGGGGGA
GATGGAATGGGAGCTGACGGCCTCGGTGGAAGGACATGAGCACGAAGCGA
AATCAGTGGCATGGAATAGGGGTGGGACATTGTTGGCGACGTGCTCCCGG
GATAAAAGCGTGTGGATTTGGGAGTGTTTGCAGGATAATGATTTTGAGTG
CTTAAGTGTGTTGCATGGGCATGAGCAGGACGTGAAATTCGTCAGGTTCC
ATCCACGGGAAGATGTGTTGTTCTCGGCCAGCTATGACGATACGTTGAAG
GTGTGGCAAGAGGAAGATGATGATTGGGCGTGTGTTGCTACATTAAAAGG
GCATACGTCCACGGTCTGGGGGTTATCAATCGGAAGTAGGGACGATGGTT
TGGTGTCATGTAGTGATGACGGGAGCTTGATCATATGGAAGGCTGCAAAT
GGAGAGGGGAATTATGACAAATGGCGAATTGTCTCGAAGTTGGAGGGGCA
GCAGAATAAGGCGACTGTTTACAGTGTAGATTGGTCAAGGGAGAGTGGGG
CGATAGCGTCGGGGGGGGCGGATGACTCGATCAGGGTTTTCGCTGAAGAT
TTGGAGCAGCCACAGGGATGGGCGTTGGACTCGCCGAGTTTTGTGTGTGA
GGCGCATGTGGAGAAGGCGCACGAAGCGGACGTAAATTGCGTGAGGTGGA
ATCCGGTAAAACCTTGGCTGTTGGCGTCGGCGGGGGACGACCAGGTAGTA
AGTGTGTGGGAATTCAGGAGGAGTGGGGAATAG
back to top

protein sequence of NO11G01930.1

>NO11G01930.1-protein ID=NO11G01930.1-protein|Name=NO11G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MSLKRRAVLAGHTDRVWHVAWSPCGKYLASCGGDRAVRVWGAPTSQQGSN
ADPAADATQAPAVPVEWRLLATLEDGQTRTVRCCEWSPCGRLLAAVSFDA
TCVIWELQPAGGRAAGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSR
DKSVWIWECLQDNDFECLSVLHGHEQDVKFVRFHPREDVLFSASYDDTLK
VWQEEDDDWACVATLKGHTSTVWGLSIGSRDDGLVSCSDDGSLIIWKAAN
GEGNYDKWRIVSKLEGQQNKATVYSVDWSRESGAIASGGADDSIRVFAED
LEQPQGWALDSPSFVCEAHVEKAHEADVNCVRWNPVKPWLLASAGDDQVV
SVWEFRRSGE*
back to top
Synonyms
Publications