jgi.p|Nanoce1779_2|551253, gene_505 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|551253
Unique Namegene_505
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_3:1224176..1226090 +

Link to JBrowse

Properties
Property NameValue
TranscriptId551339
ProteinId551253
Product nameputative tRNA-specific 2-thiouridylase mnmA
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1224176..1226090 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004808tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL047ncniL047Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04800NO01G04800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551253mRNA_505-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551253mRNA_505Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|551253

>mRNA_505-protein ID=mRNA_505-protein|Name=jgi.p|Nanoce1779_2|551253|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MANTTVTIRKRLLPRVAVGLSGGVDSSVAAMLLLQQGYEVVGVHMQNWDT
SDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDY
ERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPSL
PPSSEAIGAPQLLVGVDGSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVR
ALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAV
LGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALY
CDWLLVKEEKFNWIGRRPREIPVSMPFRCEYRVRYRQPLASCTVSLPPSA
PGLLRIDFDAPQRAVALKQTLALYDGERCLGGGVIVGVGPSYWERGKELP
EERVEWAV*
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Synonyms
Publications