jgi.p|Nanoce1779_2|551253, mRNA_505 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|551253
Unique Name	mRNA_505
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1813
Alignment location	scaffold_3:1224176..1226090 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	551339
Track	FilteredModels2
ProteinId	551253

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1224176..1226090 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551253	gene_505	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551253	mRNA_505-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_505	CDS_505	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1224176..1226090+
coding sequence from alignment at scaffold_3:1224176..1226090+

mRNA sequence

>mRNA_505 ID=mRNA_505|Name=jgi.p|Nanoce1779_2|551253|organism=Nannochloropsis oceanica|type=mRNA|length=1813bp
GGACAGCATATGGTTTGAAATGGCCGTTGTCGAGGAAGGACGCATGCGTG
TGCTCTTTTCAGAAGAGCGGTGCCAGCCGACAAAGGAACGAAGGATGAGT
GTTTTGGGCTTGTTCTTTCTCCATTCTAGCGTGTCTTGCTGCGGGTGGTT
TACCTTGCTTAGTTTTCATACCAAATGGCCACTCATTGATTTTCCCTTTT
CTCAATGTTACACAGCATCATCATTTGCAGCAGCCGGCCAGTCATAGTTA
CGTTGCTACATCAGCTTTTCTCATTTGCCTCCTTTTATGTCACGCCACCG
CCCATGCAAGCCCTCCGATAGCAATACAACCCTTACGGACGCAAAGCTAA
GATCATTATTTGTGCGAGGGCAGCCTCACTTGTGGGAGCCGTGGCTGTGG
GGGCGTGGAAGTGAGAGGCCGGCGTGTGGAAAAGAAGGGGTTACTATCTT
TGCTCGCTGAGATTTGCGCAGCTTGCAATTCGGTGCCGCCATTGTCGCCT
CCTTGGCGCGTCTTGTAACAAGAACGGAAACAAAGAAAAGAGTACAATAC
CAGCACGTATCTGCTCTGTCAAACGAAAAGCAAACCATGGCCAACACCAC
GGTCACCATTCGCAAGCGCCTTCTGCCCCGCGTCGCAGTGGGGCTCTCGG
GCGGGGTCGACTCCTCCGTGGCAGCCATGCTCCTCCTCCAGCAGGGTTAC
GAGGTGGTGGGCGTGCACATGCAAAATTGGGACACGAGTGACGAGGAAGG
AATGAGTGCGTGTCCAGAAACTGAGGACCTGAAAGACGCCCAGGAAGTAA
GCAAGCAATTGGGAATCCCTTTTTACCGTGCCGACTTTTCGAGGCCGTAC
TGGACGAATGTATTTACGCCTTTTTTGGAGGATTACGAGAGGGGATGGAC
GCCAAACCCGGATGTGTTGTGTAATCGCGAGATTAAATTTTCAAAGTTCC
GGAATTTTGCCCAAGAAGCCCTCAGGACTCCCTGGGTAGCGACGGGTCAT
TATGCGAGGCTGCGGTATCCTTGTCCTCCCTCCCTTCCTCCTTCATCTGA
AGCAATAGGAGCACCACAGCTGCTTGTCGGCGTCGATGGTAGTAAAGACC
AAAGCTACTTCCTCTCCCACGTCCCCTCCTTGGCCTTTCAGCACACCCTC
TTCCCCCTCGGGCACCTGACAAAAACCCAAGTCCGTGCCCTCGCCACAAA
TAGTGGGCTGTGTACGGCGCAAAAGAAAGAGAGCATGGGGATCTGTTTTG
TAGGGAAGCGACGCATGGGCGATTTCCTGCCTGAATACTTGAAACCGCTG
CCCGGGCTGCTGGTTTCTGTAACAGACGGAGCAGTGTTGGGAGAGCAAGA
GGGAGGGTTAACCTTGCTTACGGTTGGGCAGGGGGCACGGATAGGAGGTG
AGGCGACGAAGTGGTTTGTGTGTGGTAAGGACATGGAAAAGGGGGTGGTG
TGGGTGGCACCAGGAACGAATCATCCCGCCCTGTACTGTGACTGGCTGCT
GGTGAAGGAGGAGAAGTTCAACTGGATCGGGAGGAGGCCGAGGGAGATTC
CGGTATCGATGCCTTTCCGATGTGAATACCGGGTGCGGTATCGACAGCCT
CTCGCCAGCTGCACGGTGTCTCTTCCTCCATCAGCGCCTGGTTTGCTACG
CATTGATTTCGATGCACCCCAACGGGCGGTCGCGTTGAAGCAGACGCTGG
CATTGTATGACGGGGAAAGGTGCTTGGGGGGAGGGGTGATTGTGGGGGTG
GGGCCAAGTTATTGGGAGAGAGGGAAAGAACTGCCAGAGGAGAGGGTGGA
GTGGGCGGTATAG

protein sequence of jgi.p|Nanoce1779_2|551253

>mRNA_505-protein ID=mRNA_505-protein|Name=jgi.p|Nanoce1779_2|551253|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MANTTVTIRKRLLPRVAVGLSGGVDSSVAAMLLLQQGYEVVGVHMQNWDT
SDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDY
ERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPSL
PPSSEAIGAPQLLVGVDGSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVR
ALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAV
LGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALY
CDWLLVKEEKFNWIGRRPREIPVSMPFRCEYRVRYRQPLASCTVSLPPSA
PGLLRIDFDAPQRAVALKQTLALYDGERCLGGGVIVGVGPSYWERGKELP
EERVEWAV*

mRNA from alignment at scaffold_3:1224176..1226090+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_505 ID=mRNA_505|Name=jgi.p|Nanoce1779_2|551253|organism=Nannochloropsis oceanica|type=mRNA|length=1915bp|location=Sequence derived from alignment at scaffold_3:1224176..1226090+ (Nannochloropsis oceanica)
GGACAGCATATGGTTTGAAATGGCCGTTGTCGAGGAAGGACGCATGCGTG
TGCTCTTTTCAGAAGAGCGGTGCCAGCCGACAAAGGAACGAAGGATGAGT
GTTTTGGGCTTGTTCTTTCTCCATTCTAGCGTGTCTTGCTGCGGGTGGTT
TACCTTGCTTAGTTTTCATACCAAATGGCCACTCATTGATTTTCCCTTTT
CTCAATGTTACACAGCATCATCATTTGCAGCAGCCGGCCAGTCATAGTTA
CGTTGCTACATCAGCTTTTCTCATTTGCCTCCTTTTATGTCACGCCACCG
CCCATGCAAGCCCTCCGATAGCAATACAACCCTTACGGACGCAAAGCTAA
GATCATTATTTGTGCGAGGGCAGCCTCACTTGTGGGAGCCGTGGCTGTGG
GGGCGTGGAAGTGAGAGGCCGGCGTGTGGAAAAGAAGGGGTTACTATCTT
TGCTCGCTGAGATTTGCGCAGCTTGCAATTCGGTGCCGCCATTGTCGCCT
CCTTGGCGCGTCTTGTAACAAGAACGGAAACAAAGAAAAGAGTACAATAC
CAGCACGTATCTGCTCTGTCAAACGAAAAGCAAACCATGGCCAACACCAC
GGTCACCATTCGCAAGCGCCTTCTGCCCCGCGTCGCAGTGGGGCTCTCGG
GCGGGGTCGACTCCTCCGTGGCAGCCATGCTCCTCCTCCAGCAGGGTTAC
GAGGTGGTGGGCGTGCACATGCAAAATTGGGACACGAGTGACGAGGAAGG
AATGAGTGCGTGTCCAGAAACTGAGGACCTGAAAGACGCCCAGGAAGTAA
GCAAGCAATTGGGAATCCCTTTTTACCGTGCCGACTTTTCGAGGCCGTAC
TGGACGAATGTATTTACGCCTTTTTTGGAGGATTACGAGAGGGGATGGAC
GCCAAACCCGGATGTGTTGTGTAATCGCGAGATTAAATTTTCAAAGTTCC
GGAATTTTGCCCAAGAAGCCCTCAGGACTCCCTGGGTAGCGACGGGTCAT
TATGCGAGGCTGCGGTATCCTTGTCCTCCCTCCCTTCCTCCTTCATCTGA
AGCAATAGGAGCACCACAGCTGCTTGTCGGCGTCGATGGTAGTAAAGACC
AAAGCTACTTCCTCTCCCACGTCCCCTCCTTGGCCTTTCAGCACACCCTC
TTCCCCCTCGGGCACCTGACAAAAACCCAAGTCCGTGCCCTCGCCACAAA
TAGTGGGCTGTGTACGGCGCAAAAGAAAGAGAGCATGGGGATCTGTTTTG
TAGGGAAGCGACGCATGGGCGATTTCCTGCCTGAATACTTGAAACCGCTG
CCCGGGCTGCTGGTTTCTGTAACAGACGGAGCAGTGTTGGGAGAGCAAGA
GGGAGGGTTAACCTTGCTTACGGTTGGGCAGGGGGCACGGATAGGAGGTG
AGGCGACGAAGTGGTTTGTGTGTGGTAAGGACATGGAAAAGGGGGTGGTG
TGGGTGGCACCAGGAACGAATCATCCCGCCCTGTACTGTGACTGGCTGCT
GGTGAAGGAGGAGAAGTTCAACTGGATCGGGAGGAGGCCGAGGGAGTTGC
AGCGATTGGTGAGGGAAGATCACCACCACCACCACAGCAGCAGCAGCAGC
AACAACAACAACAACAACTTCAACAACAATAGTAATCCCAGCAGTAGGAT
TCCGGTATCGATGCCTTTCCGATGTGAATACCGGGTGCGGTATCGACAGC
CTCTCGCCAGCTGCACGGTGTCTCTTCCTCCATCAGCGCCTGGTTTGCTA
CGCATTGATTTCGATGCACCCCAACGGGCGGTCGCGTTGAAGCAGACGCT
GGCATTGTATGACGGGGAAAGGTGCTTGGGGGGAGGGGTGATTGTGGGGG
TGGGGCCAAGTTATTGGGAGAGAGGGAAAGAACTGCCAGAGGAGAGGGTG
GAGTGGGCGGTATAG

Coding sequence (CDS) from alignment at scaffold_3:1224176..1226090+

>mRNA_505 ID=mRNA_505|Name=jgi.p|Nanoce1779_2|551253|organism=Nannochloropsis oceanica|type=CDS|length=2454bp|location=Sequence derived from alignment at scaffold_3:1224176..1226090+ (Nannochloropsis oceanica)
ATGGCCAACACCACGGTCACCATTCGCAAGCGCCTTCTGCCCCGCGTCGC
AGTGGGGCTCTCGGGCGGGGTCGACTCCTCCGTGGCAGCCATGCTCCTCC
TCCAGCAGGGTTACGAGGTGGTGGGCGTGCACATGCAAAATTGGGACACG
AGTGACGAGGAAGGAATGAGTGCGTGTCCAGAAACTGAGGACCTGAAAGA
CGCCCAGGAAGTAAGCAAGCAATTGGGAATCCCTTTTTACCGTGCCGACT
TTTCGAGGCCGTACTGGACGAATGTATTTACGCCTTTTTTGGAGGATTAC
GAGAGGGGATGGACGCCAAACCCGGATGTGTTGTGTAATCGCGAGATTAA
ATTTTCAAAGTTCCGGAATTTTGCCCAAGAAGCCCTCAGGACTCCCTGGG
TAGCGACGGGTCATTATGCGAGGCTGCGGTATCCTTGTCCTCCCTCCCTT
CCTCCTTCATCTGAAGCAATAGGAGCACCACAGCTGCTTGTCGGCGTCGA
TGGTAGTAAAGACCAAAGCTACTTCCTCTCCCACGTCCCCTCCTTGGCCT
TTCAGCACACCCTCTTCCCCCTCGGGCACCTGACAAAAACCCAAGTCCGT
GCCCTCGCCACAAATAGTGGGCTGTGTACGGCGCAAAAGAAAGAGAGCAT
GGGGATCTGTTTTGTAGGGAAGCGACGCATGGGCGATTTCCTGCCTGAAT
ACTTGAAACCGCTGCCCGGGCTGCTGGTTTCTGTAACAGACGGAGCAGTG
TTGGGAGAGCAAGAGGGAGGGTTAACCTTGCTTACGGTTGGGCAGGGGGC
ACGGATAGGAGGTGAGGCGACGAAGTGGTTTGTGTGTGGTAAGGACATGG
AAAAGGGGGTGGTGTGGGTGGCACCAGGAACGAATCATCCCGCCCTGTAC
TGTGACTGGCTGCTGGTGAAGGAGGAGAAGTTCAACTGGATCGGGAGGAG
GCCGAGGGAGATTCCGGTATCGATGCCTTTCCGATGTGAATACCGGGTGC
GGTATCGACAGCCTCTCGCCAGCTGCACGGTGTCTCTTCCTCCATCAGCG
CCTGGTTTGCTACGCATTGATTTCGATGCACCCCAACGGGCGGTCGCGTT
GAAGCAGACGCTGGCATTGTATGACGGGGAAAGGTGCTTGGGGGGAGGGG
TGATTGTGGGGGTGGGGCCAAGTTATTGGGAGAGAGGGAAAGAACTGCCA
GAGGAGAGGGTGGAGTGGGCGGTATAGATGGCCAACACCACGGTCACCAT
TCGCAAGCGCCTTCTGCCCCGCGTCGCAGTGGGGCTCTCGGGCGGGGTCG
ACTCCTCCGTGGCAGCCATGCTCCTCCTCCAGCAGGGTTACGAGGTGGTG
GGCGTGCACATGCAAAATTGGGACACGAGTGACGAGGAAGGAATGAGTGC
GTGTCCAGAAACTGAGGACCTGAAAGACGCCCAGGAAGTAAGCAAGCAAT
TGGGAATCCCTTTTTACCGTGCCGACTTTTCGAGGCCGTACTGGACGAAT
GTATTTACGCCTTTTTTGGAGGATTACGAGAGGGGATGGACGCCAAACCC
GGATGTGTTGTGTAATCGCGAGATTAAATTTTCAAAGTTCCGGAATTTTG
CCCAAGAAGCCCTCAGGACTCCCTGGGTAGCGACGGGTCATTATGCGAGG
CTGCGGTATCCTTGTCCTCCCTCCCTTCCTCCTTCATCTGAAGCAATAGG
AGCACCACAGCTGCTTGTCGGCGTCGATGGTAGTAAAGACCAAAGCTACT
TCCTCTCCCACGTCCCCTCCTTGGCCTTTCAGCACACCCTCTTCCCCCTC
GGGCACCTGACAAAAACCCAAGTCCGTGCCCTCGCCACAAATAGTGGGCT
GTGTACGGCGCAAAAGAAAGAGAGCATGGGGATCTGTTTTGTAGGGAAGC
GACGCATGGGCGATTTCCTGCCTGAATACTTGAAACCGCTGCCCGGGCTG
CTGGTTTCTGTAACAGACGGAGCAGTGTTGGGAGAGCAAGAGGGAGGGTT
AACCTTGCTTACGGTTGGGCAGGGGGCACGGATAGGAGGTGAGGCGACGA
AGTGGTTTGTGTGTGGTAAGGACATGGAAAAGGGGGTGGTGTGGGTGGCA
CCAGGAACGAATCATCCCGCCCTGTACTGTGACTGGCTGCTGGTGAAGGA
GGAGAAGTTCAACTGGATCGGGAGGAGGCCGAGGGAGATTCCGGTATCGA
TGCCTTTCCGATGTGAATACCGGGTGCGGTATCGACAGCCTCTCGCCAGC
TGCACGGTGTCTCTTCCTCCATCAGCGCCTGGTTTGCTACGCATTGATTT
CGATGCACCCCAACGGGCGGTCGCGTTGAAGCAGACGCTGGCATTGTATG
ACGGGGAAAGGTGCTTGGGGGGAGGGGTGATTGTGGGGGTGGGGCCAAGT
TATTGGGAGAGAGGGAAAGAACTGCCAGAGGAGAGGGTGGAGTGGGCGGT
ATAG

Synonyms

Publications