NO01G04800, NO01G04800 (gene) Nannochloropsis oceanica

Overview
NameNO01G04800
Unique NameNO01G04800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1718
Alignment locationchr1:1272304..1274021 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1272304..1274021 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR004506tRNA-specific_2-thiouridylase
Homology
[Close]
BLAST of NO01G04800 vs. NCBI_GenBank
Match: EWM29401.1 (trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 593.2 bits (1528), Expect = 6.700e-166
Identity = 294/456 (64.47%), Postives = 336/456 (73.68%), Query Frame = 0 
Query:    8 IRKRLLPRVAVGLSGGVDSSVAAMLLLQQGYEVVGVHMQNWDTSDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDYERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRY--PCPPSLP----PSSEAIGA--------------PQLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVRALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAVLGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALYCDWLLVKEEKFNWIGRRPRELQRLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIPVSMPFRCEYRVRYRQPLASCTVSLPPSAPGLLRIDFDAPQRAVALKQTLALYDGERCLGGGVIVGVGPSYWERGKELPEERVEWAV 444
            IR RLLPRVAVGLSGGVDSSVAA+LLL+QGYEV+GVHMQNWDT+DE G SACP TEDL+DA+ VSKQLGIPF+R DF RPYWT+VFTPFLE+Y++G TPNPD+LCNREIKF +F+ FA++ + TPW+ATGHYARLR+     PSLP    PSS + G               P+L  G+D++KDQSYFLS VP+ AFQH LFPLGHL K QVR +A  +GLCTA+KKESMGICFVGKRRMG FLPEYL+P  G  VSVT G VLG QEG LTLLTVGQGARIGG   KWFVCGKDME G ++VAPGT+HPALYCDWLLV +E FNWIG+ P E+ +                              S    S+ FRCEYR RYRQPLA C VS     PG+LR+DFD PQR VAL QTLALY GERCLGGG IV VGPSY+ +GK LPE R+ WAV
Sbjct:    6 IRNRLLPRVAVGLSGGVDSSVAALLLLEQGYEVIGVHMQNWDTTDEAGASACPYTEDLRDAEAVSKQLGIPFHRVDFCRPYWTHVFTPFLEEYDKGLTPNPDILCNREIKFDRFQGFARDVVGTPWIATGHYARLRHFPSLGPSLPVGPLPSSTSEGGPRNPRACTGSHSSLPELCTGMDEAKDQSYFLSQVPTRAFQHVLFPLGHLRKGQVRDMAHAAGLCTAEKKESMGICFVGKRRMGAFLPEYLQPRAGTFVSVTTGEVLGTQEGALTLLTVGQGARIGGAEEKWFVCGKDMEAGRIYVAPGTDHPALYCDWLLVAKEDFNWIGQAPWEMGK-----------------KHEDRSQPTDRLPSTASPSVAFRCEYRARYRQPLAGCQVSTSSDHPGMLRVDFDVPQRGVALSQTLALYAGERCLGGGAIVEVGPSYYAQGKRLPERRLTWAV 444
[Close]
BLAST of NO01G04800 vs. NCBI_GenBank
Match: XP_009828223.1 (tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aphanomyces astaci] >ETV82554.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aphanomyces astaci])

HSP 1 Score: 362.8 bits (930), Expect = 1.500e-96
Identity = 204/449 (45.43%), Postives = 260/449 (57.91%), Query Frame = 0 
Query:   15 RVAVGLSGGVDSSVAAMLLLQ-QGYEVVGVHMQNWDTSDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDYERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPSLPPSSEAIGAPQLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVRALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAVLGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALYCDWLLVKEEKFNWIGRRPRELQRLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIPVSMPFRCEYRVRYRQPLASCTVSL--PPSAPGL---------------LRIDFDAPQRAVALKQTLALY--DGERCLGGGVIVGVGPSYWERGKELPEERVEWAV 444
            +V VG+SGGVDSSVAA LL Q +  EV G++M NWDTSDEEG + CP   + +  ++V   +GIP  R DF + YW NVF P L++Y +G+TPNPDVLCNREIKF  F   A+  +    +ATGHYA+L  P   S   S+++  A +L   VD +KDQ+YFLSHV + AFQ  LFPLG  TK QVR +A ++ L TA  KESMGICF+GKR  G FL +Y+ P  G  VSV   A +   + G +  T+GQGA++ G+A KWFV GK  +   V VAPGT+HPAL+ D   V  + FNW+   P   Q L++                           S    +  FRC YR RYRQPLA CTV++     A GL               L++DFD PQR +A  Q++ LY  DG  C GGG I   GPSYWE  K LP    +W V
Sbjct:   30 KVVVGMSGGVDSSVAAYLLHQDKSLEVHGMYMNNWDTSDEEGHATCPADMEYEAVRQVCNDIGIPCTRVDFVQEYWNNVFAPCLDEYAQGFTPNPDVLCNREIKFDAFARHAKHLVGADAIATGHYAQL-LPMHDSAASSTDS-DALRLFAAVDTNKDQTYFLSHVSAAAFQQVLFPLGKFTKPQVREIALHANLSTALAKESMGICFIGKRPFGSFLAQYVPPRQGHFVSVETNATMHAHD-GFSAYTIGQGAKVPGQAAKWFVVGKRDQDAAVLVAPGTHHPALFADHTYVHTQAFNWLAPPPFS-QGLIQ-------------SSVRDDGKPATPPPSHTSATTSFRCLYRARYRQPLAGCTVTIVHDLDATGLHPARHNHQQLSTDTYLKVDFDVPQRGLAPGQSVVLYRQDG-LCFGGGAIYCAGPSYWEMRKPLPSPLHDWHV 460
[Close]
BLAST of NO01G04800 vs. NCBI_GenBank
Match: OQS06402.1 (tRNA-specific 2-thiouridylase mnmA [Thraustotheca clavata])

HSP 1 Score: 359.4 bits (921), Expect = 1.600e-95
Identity = 194/452 (42.92%), Postives = 253/452 (55.97%), Query Frame = 0 
Query:   14 PRVAVGLSGGVDSSVAAMLLLQQG-YEVVGVHMQNWDTSDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDYERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPSLPPSSEAIGAPQLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVRALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAVLGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALYCDWLLVKEEKFNWI-GRRPRELQRLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIPVSMPFRCEYRVRYRQPLASCTVSLPPSAPGL--------------------LRIDFDAPQRAVALKQTLALY-DGERCLGGGVIVGVGPSYWERGKELPEERVEWA 443
            P++ VG+SGGVDSSVAA LL Q+   EV+G++M NWD SDEEG + CP   D +  ++V  ++GI   R DF + YW NVF P L+ Y  G TPNPDVLCNREIKF  F   + +AL   ++ATGHYARL            +  G+  L   VD +KDQSYFLSHV    FQ+ +FPLG L K QVR +A  + LCTA KK+S+GICF+GKR  G FL +Y+ P  G  +S+ D  VL + E G +  T+GQGA++ G  TKWFV GK  E   V +APGT+HPAL+ D + VK   FNWI G  P  L++                                      F C YR RYRQ L +C +++   +  +                    L+++F+ PQR +A  Q+L LY D   C GGG I+  GPSYWER K LPE   +W+
Sbjct:   22 PKIVVGMSGGVDSSVAAYLLKQKNECEVLGLYMNNWDASDEEGQATCPADMDYELVRQVCSEIGIECARVDFVQEYWNNVFEPCLDQYAMGLTPNPDVLCNREIKFDVFAKHS-KALGADFIATGHYARL----------VRQDNGSNALYAAVDANKDQSYFLSHVHGSQFQNVVFPLGELEKPQVRRIAAQANLCTATKKDSVGICFIGKRSFGSFLAQYVPPRVGTFISIVDDKVLHQHE-GYSAYTIGQGAKVSGLPTKWFVVGKREEDAAVLIAPGTHHPALFSDEIFVKANAFNWIQGHLPSSLEK-----------------------------------GDTFTCLYRARYRQTLGTCRITVVKHSDVIAGTSKHQQDRLNDISKDAQYLKVEFEQPQRGIAPGQSLVLYHDDGMCYGGGAILSAGPSYWERNKPLPEPLCDWS 426
[Close]
BLAST of NO01G04800 vs. NCBI_GenBank
Match: XP_008608835.1 (tRNA methyl transferase [Saprolegnia diclina VS20] >EQC37902.1 tRNA methyl transferase [Saprolegnia diclina VS20])

HSP 1 Score: 358.2 bits (918), Expect = 3.600e-95
Identity = 198/449 (44.10%), Postives = 250/449 (55.68%), Query Frame = 0 
Query:   16 VAVGLSGGVDSSVAAMLLLQ-QGYEVVGVHMQNWDTSDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDYERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPSLPPSSEAIGAPQLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVRALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAVLGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALYCDWLLVKEEKFNWI-GRRPRELQRLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIPVSMPFRCEYRVRYRQPLASCTVS------------------LPPSAPGLLRIDFDAPQRAVALKQTLALY-DGERCLGGGVIVGVGPSYWERGKELPEERVEWAV 444
            V VG+SGGVDSSV A LL Q +   VVG++M NWD+SDEEG + CP   D +  ++V  ++GI   R DF + YW NVF P L+ Y +G TPNPDVLCNREIKF  F   A  AL   ++ATGHYA+L+      LP  + A     L   VD +KDQSYFLSHV    FQ  +FPLG L K +VR +A  + LCTA KK+S+GICF+GKR  G FL +Y+ P  G  VSV D   +   + G +  T+GQGA++ G   KWFV GK  E   V++APGT+HPAL+ D + V+   FNWI G  P  L                                         RC+YR RYRQPLA CT+S                  + P+    LR+ FD PQR VA  Q+L LY D   C GGG I+G GPSYWE+ K LP    +W++
Sbjct:   27 VVVGMSGGVDSSVTAYLLHQDKSLHVVGLYMNNWDSSDEEGKATCPADMDYELVRQVCDEIGIECARVDFVQEYWNNVFEPCLDQYAKGLTPNPDVLCNREIKFDVFAKHAL-ALGADYIATGHYAQLK-----RLPDGTNA-----LYAAVDGNKDQSYFLSHVTGAQFQRVMFPLGGLCKPRVREIAAEANLCTAAKKDSVGICFIGKRSFGSFLSQYVPPRTGSFVSVVDEQQMHAHD-GYSAYTIGQGAKVSGLPAKWFVVGKRDEDAAVFIAPGTHHPALFSDEVFVRASAFNWIQGHAPAALTN-----------------------------------DGSLRCQYRARYRQPLAHCTISMASMDDVTSGLSVYQPTAIAPADEPYLRVQFDVPQRGVAPAQSLVLYEDDGLCYGGGPILGAGPSYWEQQKPLPSPLFDWSM 428
[Close]
BLAST of NO01G04800 vs. NCBI_GenBank
Match: OQR95274.1 (tRNA-specific 2-thiouridylase mnmA [Achlya hypogyna])

HSP 1 Score: 354.8 bits (909), Expect = 4.000e-94
Identity = 195/448 (43.53%), Postives = 253/448 (56.47%), Query Frame = 0 
Query:   16 VAVGLSGGVDSSVAAMLLLQ-QGYEVVGVHMQNWDTSDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDYERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPSLPPSSEAIGAPQLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVRALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAVLGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALYCDWLLVKEEKFNWIGRRPRELQRLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIPVSMPFRCEYRVRYRQPLASCTVS-------------LPPSAPG-----LLRIDFDAPQRAVALKQTLALY-DGERCLGGGVIVGVGPSYWERGKELPEERVEWAV 444
            V VG+SGGVDSSV A LL Q +   VVG++M NWD+SDEEG + CP   D +  ++V  ++GI   R DF + YW NVF P L+ Y +G TPNPDVLCNREIKF  F   A +A+   ++ATGHYA+L+     +LP  S A     L   VD +KDQSYFLSHV    FQ  LFPLG L K +VR +A  + LCTA KK+S+GICF+GKR    FL +Y+ P PG  +S+ DG+++ +   G +  T+GQGA++ G   KWFV GK  E   V +APGT HPAL+ D + V+   FNWI  +P                                   + +       C+YR RYRQPLA+C VS               P+A        LR+ F+ PQR +A  Q+L LY D   C GGG I+  GPSYWER K LP   V+W++
Sbjct:   25 VVVGMSGGVDSSVTAYLLHQDKSLHVVGLYMNNWDSSDEEGKATCPADMDFELVRQVCDEIGISCTRVDFVQEYWNNVFEPCLDQYAQGLTPNPDVLCNREIKFDVFAKHA-KAIGADYIATGHYAQLK-----ALPDGSNA-----LYAAVDANKDQSYFLSHVTGTQFQKVLFPLGGLCKPRVREIAAEANLCTATKKDSVGICFIGKRPFSSFLAQYVPPRPGSFISIEDGSIV-QPHDGYSAYTIGQGAKVSGLPIKWFVVGKREEDAGVLIAPGTQHPALFSDEVFVRANAFNWIQGQP----------------------------------PAALTNGGTLTCQYRARYRQPLATCHVSAASAGDVSAGTSVYQPTATTASNEMYLRVRFELPQRGIAPAQSLVLYQDDGLCFGGGPILAAGPSYWERRKPLPTPLVDWSM 426
[Close]
BLAST of NO01G04800 vs. NCBI_GenBank
Match: XP_008867315.1 (tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aphanomyces invadans] >ETW04359.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aphanomyces invadans])

HSP 1 Score: 351.3 bits (900), Expect = 4.400e-93
Identity = 197/442 (44.57%), Postives = 253/442 (57.24%), Query Frame = 0 
Query:   19 GLSGGVDSSVAAMLLLQ-QGYEVVGVHMQNWDTSDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDYERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPS-LPPS-SEAIGAPQLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVRALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAVLGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALYCDWLLVKEEKFNWIGRRPRELQRLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIPVSMPFRCEYRVRYRQPLASCTVSLP---------------PSAPGLLRIDFDAPQRAVALKQTLALY-DGERCLGGGVIVGVGPSYWERGKELPEERVEW 442
            G+SGGVDSSVAA LL Q +  EV G++M NWD SDEEG + CP   + +  ++V + +GI   R DF + YW NVF P L++Y +G+TPNPDVLCNREIKF  F N A++ +   ++ATGHYA+L  P P S LP S S   G   L    D +KDQ+YFLSHV   AFQ   FPLG  TK QVR +A+ + L TA  KESMGICF+GKR  G FL +Y+ P  G  VSV   AV+ E + G +  T+GQGA++ G++ KWFV GK  E   V +APGT+HPAL+ D   V    FNW+   P ++                                     +  FRC YR RYRQPLA+CTV++                P++   L+++FD PQR +A  Q+L LY D   C GGG I   GPSYWE  K LP    +W
Sbjct:   32 GMSGGVDSSVAAYLLHQDKSLEVHGLYMNNWDCSDEEGQATCPADMEYESVRQVCRDIGISCSRVDFVQTYWNNVFAPCLDEYAQGFTPNPDVLCNREIKFDAFANHAKD-IGADFIATGHYAQL-LPIPSSALPDSPSNGNGVLGLFAAADSNKDQTYFLSHVSLAAFQKVRFPLGAHTKPQVRQIASAAKLSTALAKESMGICFIGKRPFGTFLAQYVPPRKGHFVSVESNAVMHEHD-GFSSYTIGQGAKVSGQSIKWFVVGKRDEDAAVLIAPGTHHPALFADHTYVDASAFNWL-VPPHQIPSGFADNG-----------------------------TTTFRCFYRARYRQPLAACTVTIAHDLDATSLHPMRQTLPTSSTFLKVEFDIPQRGLAPGQSLVLYRDDGLCFGGGAIYCAGPSYWEMQKPLPSPLYDW 440
[Close]
BLAST of NO01G04800 vs. NCBI_GenBank
Match: XP_024572112.1 (trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Plasmopara halstedii] >CEG35743.1 trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Plasmopara halstedii])

HSP 1 Score: 346.7 bits (888), Expect = 1.100e-91
Identity = 193/456 (42.32%), Postives = 249/456 (54.61%), Query Frame = 0 
Query:   16 VAVGLSGGVDSSVAAMLLLQQGYEVVGVHMQNWDTSDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDYERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPSLPPSSEAIGAPQLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVRALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAVLGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALYCDWLLVKEEKFNWI-GRRPRELQRLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIPVSMPFRCEYRVRYRQPLASCTVSLPPSAPGL----------------------------LRIDFDAPQRAVALKQTLALYDGE-RCLGGGVIVGVGPSYWERGKELPEERVEW 442
            V VG+SGGVDSSVAA+LL +QGY V GV+M+NWD+SDE+G+SACP   + +D Q+V +QLGI     +  + YW  VF P L+ YE G TPNPD+LCNREIKF  F  +A+  +   +VATGHYA LR           E  G PQL    D +KDQSYFLS+V   AF+  LFPLG + KTQVR +A + GLCTA KK+S+GICF+GKR   DF+ +Y++   G   ++    +   +  G T  TVGQGAR+ G + KWFV GK      +++A GT +PALY D L     +FNWI G  P + Q + R                                    RC YRVRYRQ L +CTVS   S   L                            LR+DFD PQR V   Q+L LY  +  C GGG I   G +Y+E+ + LP +  +W
Sbjct:   46 VVVGMSGGVDSSVAALLLKRQGYHVTGVYMKNWDSSDEDGVSACPVDLEYRDVQKVCEQLGIEAQMVNMVQSYWNQVFAPCLKGYEEGLTPNPDILCNREIKFKAFTEYAKR-IGADYVATGHYAALR---------PVELGGLPQLFAAEDSTKDQSYFLSNVDGKAFEKVLFPLGGMRKTQVRQIAESEGLCTASKKDSVGICFIGKRNFPDFIHQYIQRQEGYFHAINGTKLYPHR--GFTAYTVGQGARLHGMSAKWFVVGKRKSDYSIFIAQGTRNPALYSDTLYASAAQFNWIAGDLPHDFQHIGR-----------------------------------LRCYYRVRYRQDLDACTVSFVSSHDALLNASKFHDWQPELVDDDNLDGKEMTRTYLRVDFDHPQRGVTPDQSLVLYRSDGLCFGGGPIAAAGKTYYEQDRLLPNDAPDW 454
[Close]
BLAST of NO01G04800 vs. NCBI_GenBank
Match: ETK71775.1 (tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phytophthora parasitica] >ETL78424.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phytophthora parasitica] >ETO60088.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phytophthora parasitica P1976])

HSP 1 Score: 345.5 bits (885), Expect = 2.400e-91
Identity = 199/455 (43.74%), Postives = 248/455 (54.51%), Query Frame = 0 
Query:   16 VAVGLSGGVDSSVAAMLLLQQGYEVVGVHMQNWDTSDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDYERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPSLPPSSEAIGAPQLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVRALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAVLGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALYCDWLLVKEEKFNWI-GRRPRELQRLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIPVSMPFRCEYRVRYRQPLASCTVSL------------------PPSAPG---------LLRIDFDAPQRAVALKQTLALY-DGERCLGGGVIVGVGPSYWERGKELPEERVEW 442
            V VG+SGGVDSSVAA+LL +QGY V GV+M+NWD SDEEG SACP   +  D Q+V +QLGI     +  + YW  VF P LE YE G TPNPD+LCNREIKF  F  +A++ +   +VATGHYA LR          +   G P L    DD+KDQSYFLS V   AF + LFPLG + KT+VR +A   GLCTA KK+S+GICF+GKR   DF+ +Y++   G   +V DG  +     G T  TVGQGAR+ G + KWFV GK      V VA GT +PAL+ D L     +FNW+ G  P+EL+                                    +   RC YRVRYRQ L  CT+SL                   P A G          LR+DFD PQR V  +Q L LY D   C GGG I   G +Y+E+GK L ++  +W
Sbjct:   55 VVVGMSGGVDSSVAALLLKRQGYRVTGVYMKNWDPSDEEGESACPVDSEYMDVQKVCEQLGIEAQMVNLVQSYWNQVFAPCLEGYEEGLTPNPDILCNREIKFKAFTEYAKK-IGADYVATGHYAALR---------PAHGCGPPNLCAAEDDTKDQSYFLSSVDGRAFANVLFPLGGMRKTEVRQIAEREGLCTATKKDSVGICFIGKRNFADFIHQYIQRQEGYFYTV-DGEKM-HSHLGFTAYTVGQGARLQGMSAKWFVVGKHKSDHSVIVAEGTRNPALFSDTLFASATEFNWMAGVLPQELRD-----------------------------------TGCMRCFYRVRYRQDLDECTISLVSNHEVRASASKLHDWQPEPLADGEDEESRERSYLRVDFDHPQRGVTPEQALVLYRDDGLCYGGGPIAAAGETYYEQGKPLADDVHDW 462
[Close]
BLAST of NO01G04800 vs. NCBI_GenBank
Match: ETM31693.1 (tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phytophthora parasitica])

HSP 1 Score: 345.5 bits (885), Expect = 2.400e-91
Identity = 199/455 (43.74%), Postives = 248/455 (54.51%), Query Frame = 0 
Query:   16 VAVGLSGGVDSSVAAMLLLQQGYEVVGVHMQNWDTSDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDYERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPSLPPSSEAIGAPQLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVRALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAVLGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALYCDWLLVKEEKFNWI-GRRPRELQRLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIPVSMPFRCEYRVRYRQPLASCTVSL------------------PPSAPG---------LLRIDFDAPQRAVALKQTLALY-DGERCLGGGVIVGVGPSYWERGKELPEERVEW 442
            V VG+SGGVDSSVAA+LL +QGY V GV+M+NWD SDEEG SACP   +  D Q+V +QLGI     +  + YW  VF P LE YE G TPNPD+LCNREIKF  F  +A++ +   +VATGHYA LR          +   G P L    DD+KDQSYFLS V   AF + LFPLG + KT+VR +A   GLCTA KK+S+GICF+GKR   DF+ +Y++   G   +V DG  +     G T  TVGQGAR+ G + KWFV GK      V VA GT +PAL+ D L     +FNW+ G  P+EL+                                    +   RC YRVRYRQ L  CT+SL                   P A G          LR+DFD PQR V  +Q L LY D   C GGG I   G +Y+E+GK L ++  +W
Sbjct:   55 VVVGMSGGVDSSVAALLLKRQGYHVTGVYMKNWDPSDEEGESACPVDSEYMDVQKVCEQLGIEAQMVNLVQSYWNQVFAPCLEGYEEGLTPNPDILCNREIKFKAFTEYAKK-IGADYVATGHYAALR---------PAHGCGPPNLCAAEDDTKDQSYFLSSVDGRAFANVLFPLGGMRKTEVRQIAEREGLCTATKKDSVGICFIGKRNFADFIHQYIQRQEGYFYTV-DGEKM-HSHLGFTAYTVGQGARLQGMSAKWFVVGKHKSDHSVIVAEGTRNPALFSDTLFASATEFNWMAGVLPQELRD-----------------------------------TGCMRCFYRVRYRQDLDECTISLVSNHEVRASASKLHDWQPEPLADGEDEESRERSYLRVDFDHPQRGVTPEQALVLYRDDGLCYGGGPIAAAGETYYEQGKPLADDVHDW 462
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BLAST of NO01G04800 vs. NCBI_GenBank
Match: ETI31388.1 (tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phytophthora parasitica P1569] >ETL25206.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phytophthora parasitica] >ETP01175.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phytophthora parasitica CJ01A1])

HSP 1 Score: 345.1 bits (884), Expect = 3.200e-91
Identity = 199/455 (43.74%), Postives = 248/455 (54.51%), Query Frame = 0 
Query:   16 VAVGLSGGVDSSVAAMLLLQQGYEVVGVHMQNWDTSDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDYERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPSLPPSSEAIGAPQLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVRALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAVLGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALYCDWLLVKEEKFNWI-GRRPRELQRLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIPVSMPFRCEYRVRYRQPLASCTVSL------------------PPSAPG---------LLRIDFDAPQRAVALKQTLALY-DGERCLGGGVIVGVGPSYWERGKELPEERVEW 442
            V VG+SGGVDSSVAA+LL +QGY V GV+M+NWD SDEEG SACP   +  D Q+V +QLGI     +  + YW  VF P LE YE G TPNPD+LCNREIKF  F  +A++ +   +VATGHYA LR          +   G P L    DD+KDQSYFLS V   AF + LFPLG + KT+VR +A   GLCTA KK+S+GICF+GKR   DF+ +Y++   G   +V DG  +     G T  TVGQGAR+ G + KWFV GK      V VA GT +PAL+ D L     +FNW+ G  P+EL+                                    +   RC YRVRYRQ L  CT+SL                   P A G          LR+DFD PQR V  +Q L LY D   C GGG I   G +Y+E+GK L ++  +W
Sbjct:   55 VVVGMSGGVDSSVAALLLKRQGYHVTGVYMKNWDPSDEEGESACPVDSEYLDVQKVCEQLGIEAQMVNLVQSYWNQVFAPCLEGYEEGLTPNPDILCNREIKFKAFTEYAKK-IGADYVATGHYAALR---------PAHGCGPPNLCAAEDDTKDQSYFLSSVDGRAFANVLFPLGGMRKTEVRQIAEREGLCTATKKDSVGICFIGKRNFADFIHQYIQRQEGYFYTV-DGEKM-HSHLGFTAYTVGQGARLQGMSAKWFVVGKHKSDHSVIVAEGTRNPALFSDTLFASATEFNWMAGVLPQELRD-----------------------------------TGCMRCFYRVRYRQDLDECTISLVSNHEVRASASKLHDWQPEPLADGEDEESRERSYLRVDFDHPQRGVTPEQALVLYRDDGLCYGGGPIAAAGETYYEQGKPLADDVHDW 462
The following BLAST results are available for this feature:
BLAST of NO01G04800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29401.16.700e-16664.47trna (5-methylaminomethyl-2-thiouridylate)-methylt... [more]
XP_009828223.11.500e-9645.43tRNA (5-methylaminomethyl-2-thiouridylate)-methylt... [more]
OQS06402.11.600e-9542.92tRNA-specific 2-thiouridylase mnmA [Thraustotheca ... [more]
XP_008608835.13.600e-9544.10tRNA methyl transferase [Saprolegnia diclina VS20]... [more]
OQR95274.14.000e-9443.53tRNA-specific 2-thiouridylase mnmA [Achlya hypogyn... [more]
XP_008867315.14.400e-9344.57tRNA (5-methylaminomethyl-2-thiouridylate)-methylt... [more]
XP_024572112.11.100e-9142.32trna (5-methylaminomethyl-2-thiouridylate)-methylt... [more]
ETK71775.12.400e-9143.74tRNA (5-methylaminomethyl-2-thiouridylate)-methylt... [more]
ETM31693.12.400e-9143.74tRNA (5-methylaminomethyl-2-thiouridylate)-methylt... [more]
ETI31388.13.200e-9143.74tRNA (5-methylaminomethyl-2-thiouridylate)-methylt... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007785NSK007785Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04800.1NO01G04800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551253gene_505Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100042g30gene1219Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04800.1NO01G04800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04800 ID=NO01G04800|Name=NO01G04800|organism=Nannochloropsis oceanica|type=gene|length=1718bp
ACAGCATCATCATTTGCAGCAGCCGGCCAGTCATAGTTACGTTGCTACAT
CAGCTTTTCTCATTTGCCTCCTTTTATGTCACGCCACCGCCCATGCAAGC
CCTCCGATAGCAATACAACCCTTACGGACGCAAAGCTAAGATCATTATTT
GTGCGAGGGCAGCCTCACTTGTGGGAGCCGTGGCTGTGGGGGCGTGGAAG
TTAGAGGCCGGCGTGTGGAAAAGAAGGGGTTACTATCTTTGCTCGCTGAG
ATTTGCGCAGCTTGCAATTCGGTGCCGCCATTGTCGCCTCCTTGGCGCGT
CTTGTAACAAGAACGGAAACAAAGAAAAGAGTACAATACCAGCACGTATC
TGCTCTGTCAAACGAAAAACAAACCATGGCCAACACCACGGTCACCATTC
GCAAGCGCCTTCTGCCCCGCGTCGCAGTGGGGCTCTCGGGCGGGGTCGAC
TCCTCCGTGGCAGCCATGCTCCTCCTCCAGCAGGGTTACGAGGTGGTGGG
CGTGCACATGCAAAATTGGGACACGAGTGACGAGGAAGGAATGAGTGCGT
GTCCAGAAACTGAGGACCTGAAAGACGCCCAGGAAGTAAGCAAGCAGTTG
GGAATCCCTTTTTACCGTGCCGACTTTTCGAGGCCGTACTGGACGAATGT
ATTTACGCCTTTTTTGGAGGATTACGAGAGGGGATGGACGCCAAACCCGG
ATGTGTTGTGTAATCGCGAGATTAAATTTTCAAAGTTCCGGAATTTTGCC
CAAGAAGCCCTCAGGACTCCCTGGGTAGCGACGGGTCATTATGCGAGGCT
GCGGTATCCTTGTCCTCCCTCCCTTCCTCCTTCATCTGAAGCAATAGGAG
CACCACAGCTGCTTGTCGGCGTCGATGATAGTAAAGACCAAAGCTACTTC
CTCTCCCACGTCCCCTCCTTGGCCTTTCAGCACACCCTCTTCCCCCTCGG
GCACCTGACAAAAACCCAAGTCCGTGCCCTCGCCACAAATAGTGGGCTGT
GTACGGCGCAAAAGAAAGAGAGCATGGGGATCTGTTTTGTAGGGAAGCGA
CGCATGGGCGATTTCCTGCCTGAATACTTGAAACCGCTGCCCGGGCTGCT
GGTTTCTGTAACAGACGGAGCAGTGTTGGGAGAGCAAGAGGGAGGGTTAA
CCTTGCTTACGGTTGGGCAGGGGGCACGGATAGGAGGTGAGGCGACGAAG
TGGTTTGTGTGTGGTAAGGACATGGAAAAGGGGGTGGTGTGGGTGGCACC
AGGAACGAATCACCCCGCCCTGTACTGTGACTGGCTGCTGGTGAAGGAGG
AGAAGTTCAACTGGATCGGGAGGAGGCCGAGGGAGTTGCAGCGATTGGTG
AGGGAAGATCACCACCACCACCACAGCAGCAGCAGCAGCAACAACAACAA
CAACAACAACTTCAACAACAATAGTAATCCCAGCAGTAGGATTCCGGTAT
CGATGCCTTTCCGATGTGAATACCGGGTGCGGTATCGACAGCCTCTCGCC
AGCTGCACGGTGTCTCTTCCTCCATCAGCGCCTGGTTTGCTACGCATTGA
TTTCGATGCACCCCAACGGGCGGTCGCGTTGAAGCAGACGCTGGCATTGT
ATGACGGGGAAAGGTGCTTGGGGGGAGGGGTGATTGTGGGGGTGGGGCCA
AGTTATTGGGAGAGAGGGAAAGAACTGCCAGAGGAGAGGGTGGAGTGGGC
GGTATAGGGAGGGTGGGA
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protein sequence of NO01G04800.1

>NO01G04800.1-protein ID=NO01G04800.1-protein|Name=NO01G04800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MANTTVTIRKRLLPRVAVGLSGGVDSSVAAMLLLQQGYEVVGVHMQNWDT
SDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDY
ERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPSL
PPSSEAIGAPQLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVR
ALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAV
LGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALY
CDWLLVKEEKFNWIGRRPRELQRLVREDHHHHHSSSSSNNNNNNNFNNNS
NPSSRIPVSMPFRCEYRVRYRQPLASCTVSLPPSAPGLLRIDFDAPQRAV
ALKQTLALYDGERCLGGGVIVGVGPSYWERGKELPEERVEWAV*
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Synonyms
Publications