jgi.p|Nanoce1779_2|589035, gene_4416 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589035
Unique Namegene_4416
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:530950..532791 +

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Properties
Property NameValue
TranscriptId589121
ProteinId589035
Product nameclathrin assembly complex, medium subunit
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:530950..532791 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0030131clathrin adaptor complex
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01380NO09G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589035mRNA_4416-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589035mRNA_4416Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|589035

>mRNA_4416-protein ID=mRNA_4416-protein|Name=jgi.p|Nanoce1779_2|589035|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MVASALFIMDLKGKIIISRNFRGDIPQTVSERFAIYLQEKEESEQRPVFT
EDGYTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEE
SIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVA
LTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIVGAIRMKS
FLSGMPELKLGLNDKLMFEAAGRSVSASTKGKAIELEDIKFHQCVRLARF
ENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKA
KSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWSIKQ
FHGQREYLMRAHFGLPSIAAEGSSTSAAEKCWKKPVQIKFEIPYFTVSGI
QVRYLKIIEKSGFAALPWVRYITCAGDVFMRMGT*
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Synonyms
Publications