jgi.p|Nanoce1779_2|589035, mRNA_4416 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589035
Unique Name	mRNA_4416
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1426
Alignment location	scaffold_10:530950..532791 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589121
Track	FilteredModels2
ProteinId	589035

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:530950..532791 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589035	gene_4416	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589035	mRNA_4416-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4416	CDS_4416	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:530950..532791+
coding sequence from alignment at scaffold_10:530950..532791+

mRNA sequence

>mRNA_4416 ID=mRNA_4416|Name=jgi.p|Nanoce1779_2|589035|organism=Nannochloropsis oceanica|type=mRNA|length=1426bp
ACAGGCAAGGATCACCACTCGAAACAAAGGCTAACCCACCCGCGCCTCAA
GTCTCCGCGAACACCTGCCTCCTTCTCCTTCCGGACCCCTCGGCCGCCAC
AAGGAGCCCACCATGGTGGCCTCGGCGCTTTTCATCATGGATCTCAAGGG
GAAGATCATCATCTCCCGCAACTTCAGGGGTGATATCCCCCAGACTGTCT
CGGAAAGATTCGCCATATACCTCCAAGAAAAGGAAGAATCGGAGCAACGG
CCCGTCTTCACAGAAGACGGCTACACTTTTGCCTATCTCAAGTACAACAA
TCTCTTTCTTCTGAGTGTGACCAAACGCAATTCCAACGTGGCTTTGATGC
TTGTCTACCTCTCCCGGTTGGTCGACGTGTTCAAAGAGTATTTTGGGGAG
TTGGAAGAAGAAAGCATCCGTGACAACTTTGTCATTATTTATGAGTTAAT
GGACGAGACGATGGACTTTGGCTATCCCCAGACAACGGAGGCGAAGATTC
TGAGAGAGTACATCACTCAAGAAGGGAATAGGCTGGAAGCCGCCCCACGG
CCGCCGGTGGCGTTGACCAACACGGTGTCATGGCGCTCAGAAGGGATCAA
ACATCGGAAGAACGAGATCTTCTTGGACGTCATCGAAAAATTGAACTTGT
TGGTGTCAGCGAACGGGACCGTGTTGCACTCGGAGATTGTTGGGGCGATC
CGGATGAAGTCCTTCTTGAGTGGCATGCCCGAGTTGAAGCTGGGTTTGAA
TGATAAGCTGATGTTCGAGGCGGCCGGGCGGTCGGTCTCGGCCTCGACGA
AAGGGAAGGCGATCGAGCTGGAGGACATCAAGTTTCATCAATGTGTCAGG
CTGGCGCGCTTCGAGAACGATCGAACCATTTCCTTCATCCCGCCGGATGG
GGAGTTTGACCTGATGACCTACCGCTTGTCGACGCAGGTGAAGCCCTTGA
TATGGGTGGAGGCGGTAGTGGAGCCTCATTCTCACTCTAGAATCGAGTAT
ATGATCAAGGCCAAGAGTCAGTTTAAGTCCCGCTCCATCGCCAACAACGT
GGATATCATTATCCCCGTCCCCTCTGATGTGGACACGCCCTCCTTCAAAG
CCTCCATTGGCACCGTCACATACCTCCCCGACAAGGACGCCATCGTCTGG
AGCATCAAGCAATTCCACGGTCAACGTGAATATCTTATGCGCGCTCATTT
TGGTTTGCCTTCCATTGCCGCGGAAGGGTCCTCCACCAGTGCCGCGGAGA
AGTGTTGGAAGAAGCCGGTGCAGATTAAATTTGAGATTCCTTATTTTACC
GTTTCGGGTATCCAGGTTCGATACTTGAAGATTATAGAGAAGAGCGGTTT
TGCGGCTTTGCCTTGGGTGCGATATATAACTTGTGCGGGGGATGTTTTTA
TGCGCATGGGGACTTGAGATGTGGGG

protein sequence of jgi.p|Nanoce1779_2|589035

>mRNA_4416-protein ID=mRNA_4416-protein|Name=jgi.p|Nanoce1779_2|589035|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MVASALFIMDLKGKIIISRNFRGDIPQTVSERFAIYLQEKEESEQRPVFT
EDGYTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEE
SIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVA
LTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIVGAIRMKS
FLSGMPELKLGLNDKLMFEAAGRSVSASTKGKAIELEDIKFHQCVRLARF
ENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKA
KSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWSIKQ
FHGQREYLMRAHFGLPSIAAEGSSTSAAEKCWKKPVQIKFEIPYFTVSGI
QVRYLKIIEKSGFAALPWVRYITCAGDVFMRMGT*

mRNA from alignment at scaffold_10:530950..532791+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4416 ID=mRNA_4416|Name=jgi.p|Nanoce1779_2|589035|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp|location=Sequence derived from alignment at scaffold_10:530950..532791+ (Nannochloropsis oceanica)
ACAGGCAAGGATCACCACTCGAAACAAAGGCTAACCCACCCGCGCCTCAA
GTCTCCGCGAACACCTGCCTCCTTCTCCTTCCGGACCCCTCGGCCGCCAC
AAGGAGCCCACCATGGTGGCCTCGGCGCTTTTCATCATGGATCTCAAGGG
GAAGATCATCATCTCCCGCAACTTCAGGGGTGATATCCCCCAGACTGTCT
CGGAAAGGTAAAGCGAGTAAGGGAGGGCAGGGTTGCTGCTTCTGCTGATG
ATTACGAGGGGGCAAGCGGGGCTGTGACATCCGTAGGGACAGCAAGAGGG
CGGCTCCTGCAGCGCTTGTTTTTGCTTTGTCTTTCACGGTCCGGAGCGAG
TTTTAGAGCGCCTGTCTTATGCCTCTGCGAGCTCTCCGTGCCCTTCCAGC
TCTCATCCACCCATCCTTCTTTCTCCCCTTACTCCCCCCGTCCCTTAGAT
TCGCCATATACCTCCAAGAAAAGGAAGAATCGGAGCAACGGCCCGTCTTC
ACAGAAGACGGCTACACTTTTGCCTATCTCAAGTACAACAATCTCTTTCT
TCTGAGTGTGACCAAACGCAATTCCAACGTGGCTTTGATGCTTGTCTACC
TCTCCCGGTTGGTCGACGTGTTCAAAGAGTATTTTGGGGAGTTGGAAGAA
GAAAGCATCCGTGACAACTTTGTCATTATTTATGAGTTAATGGACGAGAC
GATGGACTTTGGCTATCCCCAGACAACGGAGGCGAAGATTCTGAGAGAGT
ACATCACTCAAGAAGGGAATAGGCTGGAAGCCGCCCCACGGCCGCCGGTG
GCGTTGACCAACACGGTGTCATGGCGCTCAGAAGGGATCAAACATCGGAA
GAACGAGATCTTCTTGGACGTCATCGAAAAATTGAACTTGTTGGTGTCAG
CGAACGGGACCGTGTTGCACTCGGAGATTGTTGGGGCGATCCGGATGAAG
TCCTTCTTGAGTGGCATGCCCGAGTTGAAGCTGGGTTTGAATGATAAGCT
GATGTTCGAGGCGGCCGGGCGGTCGGTCTCGGCCTCGACGAAAGGGAAGG
CGATCGAGCTGGAGGACATCAAGTTTCATCAATGTGTCAGGCTGGCGCGC
TTCGAGAACGATCGAACCATTTCCTTCATCCCGCCGGATGGGGAGTTTGA
CCTGATGACCTACCGCTTGTCGACGCAGGTGAAGCCCTTGATATGGGTGG
AGGCGGTAGTGGAGCCTCATTCTCACTCTAGAATCGAGTATATGATCAAG
GTGAGGAAGAACGGAAGACGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GACGTGATGGTGAGAGTATGTTAAGATGGATTTCGTACCTTGAGTGTCTT
TGTCCACGGCGCCCATGACACGCAAACACACTTACACCATTTTCTTGTCT
TTTCCTTTCTCCAATCAATCCACAGGCCAAGAGTCAGTTTAAGTCCCGCT
CCATCGCCAACAACGTGGATATCATTATCCCCGTCCCCTCTGATGTGGAC
ACGCCCTCCTTCAAAGCCTCCATTGGCACCGTCACATACCTCCCCGACAA
GGACGCCATCGTCTGGAGCATCAAGCAATTCCACGGTCAACGTGAATATC
TTATGCGCGCTCATTTTGGTTTGCCTTCCATTGCCGCGGAAGGGTCCTCC
ACCAGTGCCGCGGAGAAGTGTTGGAAGAAGCCGGTGCAGATTAAATTTGA
GATTCCTTATTTTACCGTTTCGGGTATCCAGGTTCGATACTTGAAGATTA
TAGAGAAGAGCGGTTTTGCGGCTTTGCCTTGGGTGCGATATATAACTTGT
GCGGGGGATGTTTTTATGCGCATGGGGACTTGAGATGTGGGG

Coding sequence (CDS) from alignment at scaffold_10:530950..532791+

>mRNA_4416 ID=mRNA_4416|Name=jgi.p|Nanoce1779_2|589035|organism=Nannochloropsis oceanica|type=CDS|length=3915bp|location=Sequence derived from alignment at scaffold_10:530950..532791+ (Nannochloropsis oceanica)
ATGGTGGCCTCGGCGCTTTTCATCATGGATCTCAAGGGGAAGATCATCAT
CTCCCGCAACTTCAGGGGTGATATCCCCCAGACTGTCTCGGAAAGATTCG
CCATATACCTCCAAGAAAAGGAAGAATCGGAGCAACGGCCCGTCTTCACA
GAAGACGGCTACACTTTTGCCTATCTCAAGTACAACAATCTCTTTCTTCT
GAGTGTGACCAAACGCAATTCCAACGTGGCTTTGATGCTTGTCTACCTCT
CCCGGTTGGTCGACGTGTTCAAAGAGTATTTTGGGGAGTTGGAAGAAGAA
AGCATCCGTGACAACTTTGTCATTATTTATGAGTTAATGGACGAGACGAT
GGACTTTGGCTATCCCCAGACAACGGAGGCGAAGATTCTGAGAGAGTACA
TCACTCAAGAAGGGAATAGGCTGGAAGCCGCCCCACGGCCGCCGGTGGCG
TTGACCAACACGGTGTCATGGCGCTCAGAAGGGATCAAACATCGGAAGAA
CGAGATCTTCTTGGACGTCATCGAAAAATTGAACTTGTTGGTGTCAGCGA
ACGGGACCGTGTTGCACTCGGAGATTGTTGGGGCGATCCGGATGAAGTCC
TTCTTGAGTGGCATGCCCGAGTTGAAGCTGGGTTTGAATGATAAGCTGAT
GTTCGAGGCGGCCGGGCGGTCGGTCTCGGCCTCGACGAAAGGGAAGGCGA
TCGAGCTGGAGGACATCAAGTTTCATCAATGTGTCAGGCTGGCGCGCTTC
GAGAACGATCGAACCATTTCCTTCATCCCGCCGGATGGGGAGTTTGACCT
GATGACCTACCGCTTGTCGACGCAGGTGAAGCCCTTGATATGGGTGGAGG
CGGTAGTGGAGCCTCATTCTCACTCTAGAATCGAGTATATGATCAAGGCC
AAGAGTCAGTTTAAGTCCCGCTCCATCGCCAACAACGTGGATATCATTAT
CCCCGTCCCCTCTGATGTGGACACGCCCTCCTTCAAAGCCTCCATTGGCA
CCGTCACATACCTCCCCGACAAGGACGCCATCGTCTGGAGCATCAAGCAA
TTCCACGGTCAACGTGAATATCTTATGCGCGCTCATTTTGGTTTGCCTTC
CATTGCCGCGGAAGGGTCCTCCACCAGTGCCGCGGAGAAGTGTTGGAAGA
AGCCGGTGCAGATTAAATTTGAGATTCCTTATTTTACCGTTTCGGGTATC
CAGGTTCGATACTTGAAGATTATAGAGAAGAGCGGTTTTGCGGCTTTGCC
TTGGGTGCGATATATAACTTGTGCGGGGGATGTTTTTATGCGCATGGGGA
CTTGAATGGTGGCCTCGGCGCTTTTCATCATGGATCTCAAGGGGAAGATC
ATCATCTCCCGCAACTTCAGGGGTGATATCCCCCAGACTGTCTCGGAAAG
ATTCGCCATATACCTCCAAGAAAAGGAAGAATCGGAGCAACGGCCCGTCT
TCACAGAAGACGGCTACACTTTTGCCTATCTCAAGTACAACAATCTCTTT
CTTCTGAGTGTGACCAAACGCAATTCCAACGTGGCTTTGATGCTTGTCTA
CCTCTCCCGGTTGGTCGACGTGTTCAAAGAGTATTTTGGGGAGTTGGAAG
AAGAAAGCATCCGTGACAACTTTGTCATTATTTATGAGTTAATGGACGAG
ACGATGGACTTTGGCTATCCCCAGACAACGGAGGCGAAGATTCTGAGAGA
GTACATCACTCAAGAAGGGAATAGGCTGGAAGCCGCCCCACGGCCGCCGG
TGGCGTTGACCAACACGGTGTCATGGCGCTCAGAAGGGATCAAACATCGG
AAGAACGAGATCTTCTTGGACGTCATCGAAAAATTGAACTTGTTGGTGTC
AGCGAACGGGACCGTGTTGCACTCGGAGATTGTTGGGGCGATCCGGATGA
AGTCCTTCTTGAGTGGCATGCCCGAGTTGAAGCTGGGTTTGAATGATAAG
CTGATGTTCGAGGCGGCCGGGCGGTCGGTCTCGGCCTCGACGAAAGGGAA
GGCGATCGAGCTGGAGGACATCAAGTTTCATCAATGTGTCAGGCTGGCGC
GCTTCGAGAACGATCGAACCATTTCCTTCATCCCGCCGGATGGGGAGTTT
GACCTGATGACCTACCGCTTGTCGACGCAGGTGAAGCCCTTGATATGGGT
GGAGGCGGTAGTGGAGCCTCATTCTCACTCTAGAATCGAGTATATGATCA
AGGCCAAGAGTCAGTTTAAGTCCCGCTCCATCGCCAACAACGTGGATATC
ATTATCCCCGTCCCCTCTGATGTGGACACGCCCTCCTTCAAAGCCTCCAT
TGGCACCGTCACATACCTCCCCGACAAGGACGCCATCGTCTGGAGCATCA
AGCAATTCCACGGTCAACGTGAATATCTTATGCGCGCTCATTTTGGTTTG
CCTTCCATTGCCGCGGAAGGGTCCTCCACCAGTGCCGCGGAGAAGTGTTG
GAAGAAGCCGGTGCAGATTAAATTTGAGATTCCTTATTTTACCGTTTCGG
GTATCCAGGTTCGATACTTGAAGATTATAGAGAAGAGCGGTTTTGCGGCT
TTGCCTTGGGTGCGATATATAACTTGTGCGGGGGATGTTTTTATGCGCAT
GGGGACTTGAATGGTGGCCTCGGCGCTTTTCATCATGGATCTCAAGGGGA
AGATCATCATCTCCCGCAACTTCAGGGGTGATATCCCCCAGACTGTCTCG
GAAAGATTCGCCATATACCTCCAAGAAAAGGAAGAATCGGAGCAACGGCC
CGTCTTCACAGAAGACGGCTACACTTTTGCCTATCTCAAGTACAACAATC
TCTTTCTTCTGAGTGTGACCAAACGCAATTCCAACGTGGCTTTGATGCTT
GTCTACCTCTCCCGGTTGGTCGACGTGTTCAAAGAGTATTTTGGGGAGTT
GGAAGAAGAAAGCATCCGTGACAACTTTGTCATTATTTATGAGTTAATGG
ACGAGACGATGGACTTTGGCTATCCCCAGACAACGGAGGCGAAGATTCTG
AGAGAGTACATCACTCAAGAAGGGAATAGGCTGGAAGCCGCCCCACGGCC
GCCGGTGGCGTTGACCAACACGGTGTCATGGCGCTCAGAAGGGATCAAAC
ATCGGAAGAACGAGATCTTCTTGGACGTCATCGAAAAATTGAACTTGTTG
GTGTCAGCGAACGGGACCGTGTTGCACTCGGAGATTGTTGGGGCGATCCG
GATGAAGTCCTTCTTGAGTGGCATGCCCGAGTTGAAGCTGGGTTTGAATG
ATAAGCTGATGTTCGAGGCGGCCGGGCGGTCGGTCTCGGCCTCGACGAAA
GGGAAGGCGATCGAGCTGGAGGACATCAAGTTTCATCAATGTGTCAGGCT
GGCGCGCTTCGAGAACGATCGAACCATTTCCTTCATCCCGCCGGATGGGG
AGTTTGACCTGATGACCTACCGCTTGTCGACGCAGGTGAAGCCCTTGATA
TGGGTGGAGGCGGTAGTGGAGCCTCATTCTCACTCTAGAATCGAGTATAT
GATCAAGGCCAAGAGTCAGTTTAAGTCCCGCTCCATCGCCAACAACGTGG
ATATCATTATCCCCGTCCCCTCTGATGTGGACACGCCCTCCTTCAAAGCC
TCCATTGGCACCGTCACATACCTCCCCGACAAGGACGCCATCGTCTGGAG
CATCAAGCAATTCCACGGTCAACGTGAATATCTTATGCGCGCTCATTTTG
GTTTGCCTTCCATTGCCGCGGAAGGGTCCTCCACCAGTGCCGCGGAGAAG
TGTTGGAAGAAGCCGGTGCAGATTAAATTTGAGATTCCTTATTTTACCGT
TTCGGGTATCCAGGTTCGATACTTGAAGATTATAGAGAAGAGCGGTTTTG
CGGCTTTGCCTTGGGTGCGATATATAACTTGTGCGGGGGATGTTTTTATG
CGCATGGGGACTTGA

Synonyms

Publications