jgi.p|Nanoce1779_2|586699, gene_4145 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586699
Unique Namegene_4145
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_8:937820..939610 +

Link to JBrowse

Properties
Property NameValue
TranscriptId586785
ProteinId586699
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:937820..939610 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL004ncniL004Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00750NO10G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586699mRNA_4145-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586699mRNA_4145Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|586699

>mRNA_4145-protein ID=mRNA_4145-protein|Name=jgi.p|Nanoce1779_2|586699|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MQQTSLLLRPMLLSYCGRCRRLRPATSAFLSSASTSQPRQNQDKSTRHSP
YMGVHWHRANKRWIAEVRHQGTRVLYKSFVDEREAALAVDDMLRQIFGEA
ILTNFHKATGVFLDPRQAFAMPTDEKEMDDMGGTNSTSNSNSNIPSHNAN
AGVSFVQALSKYKAVIKQHGRPLLLGLFPTKSQALAAIKEKTAPVGRGGM
AAAPKQSRFLGLSWDTHHKRWMARLHHEGIRVLSRTFKEEMEEEAARVYD
QYARRYHGEEALVNFDHNGVFLDPKNRVTRVDTSSNTTNTNTSTRNCSSS
SGNGSGSSSSSNTPGDVDYRGLSWSKEMQKWHAQIQVAGRVYNLGYHSNP
ETAALLYDAAAREHHGARARCNFDEQGMRTNVRIKLNNTAGAMSRYVLRT
PYEK*
back to top
Synonyms
Publications