jgi.p|Nanoce1779_2|586699, mRNA_4145 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586699
Unique Name	mRNA_4145
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1666
Alignment location	scaffold_8:937820..939610 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586785
Track	FilteredModels2
ProteinId	586699

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:937820..939610 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586699	gene_4145	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586699	mRNA_4145-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4145	CDS_4145	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:937820..939610+
coding sequence from alignment at scaffold_8:937820..939610+

mRNA sequence

>mRNA_4145 ID=mRNA_4145|Name=jgi.p|Nanoce1779_2|586699|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp
GAATCGGAGAACTCAAGACTCGGAGGGAGTAGCTCACCCGCTAAGCACGT
ACGGCGTAAAGTGCGGGTCCTCTAATTGCATCAGAGGAATAGGAACGCCT
CCAAACTGAATAAGAAAACATGCTTATGTGGGTCAAGACACAGTTGTGAA
TGCGAAGGCAGCGGGGGCCGTATTGCTTCTATGGCGAATGTGAAGATGGG
GGGTACTTTGAAGAAAAGAGGAGCTGTCTTCAAGGGTGGACACATCGATA
AGCATGTTCAGTGTCATGGTGAAATATATTTGTGAGAGAGGATATACCAA
AGCGCATTTGAGATGTTGAATTCATCCTTCCATCTCACACACGGCCGCCT
CGCATTTTACCAACAGCTTACCCTTAACATTGATGCAGCAAACTTCATTG
CTTCTCCGGCCGATGCTGCTGTCTTACTGTGGCCGCTGTCGTCGTCTTCG
CCCCGCCACATCTGCCTTCCTCTCGTCCGCTTCGACTTCACAACCCCGAC
AAAATCAAGACAAATCCACGCGCCACTCGCCCTACATGGGTGTGCACTGG
CACCGCGCTAACAAGCGGTGGATCGCCGAAGTCCGGCATCAGGGCACGCG
CGTCCTCTACAAGTCCTTTGTAGATGAGAGAGAAGCTGCTTTGGCCGTGG
ATGATATGCTGAGACAAATTTTTGGGGAGGCCATCTTGACCAACTTTCAC
AAAGCCACCGGCGTGTTCCTCGACCCACGGCAAGCGTTCGCCATGCCGAC
AGATGAGAAAGAAATGGATGACATGGGCGGCACCAACAGCACCAGCAACA
GCAACAGCAATATCCCATCCCACAATGCTAATGCCGGCGTCTCGTTTGTG
CAAGCCCTGAGCAAATACAAAGCCGTCATTAAACAACACGGCCGTCCCCT
CCTCCTTGGCCTCTTTCCCACCAAAAGCCAAGCATTAGCAGCAATCAAAG
AGAAGACTGCGCCCGTCGGGAGAGGAGGCATGGCGGCCGCCCCCAAACAA
AGCCGGTTTCTGGGCCTATCGTGGGACACTCATCACAAGAGGTGGATGGC
AAGATTGCATCATGAGGGGATTCGGGTATTGTCTAGGACATTCAAGGAGG
AGATGGAGGAGGAGGCGGCACGAGTGTATGACCAATATGCGCGCAGGTAC
CACGGTGAGGAAGCCTTGGTCAATTTCGATCACAACGGGGTATTTCTCGA
CCCCAAGAACCGTGTCACGCGCGTGGATACAAGCAGCAACACCACCAACA
CCAACACCAGTACCAGAAACTGTAGCAGTAGCAGTGGCAATGGCAGTGGC
AGTAGCAGTAGCAGTAACACACCCGGGGACGTCGACTATCGAGGCCTCTC
CTGGTCCAAGGAAATGCAAAAGTGGCACGCCCAGATTCAGGTTGCAGGCC
GTGTGTACAATCTTGGGTACCATTCAAACCCGGAAACGGCTGCTTTGTTG
TATGATGCCGCCGCTCGTGAGCACCACGGGGCCCGGGCTCGGTGCAATTT
TGATGAGCAGGGAATGAGGACTAATGTGAGGATTAAACTCAATAACACGG
CGGGGGCAATGTCTCGGTATGTCTTGCGGACGCCATATGAAAAATGAAAA
GGGCGACAAGGTGGGCGACAAGGTGTAGAGTAAGAGAGAAATGAAATTCA
AAATGTGATCGAAGCA

protein sequence of jgi.p|Nanoce1779_2|586699

>mRNA_4145-protein ID=mRNA_4145-protein|Name=jgi.p|Nanoce1779_2|586699|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MQQTSLLLRPMLLSYCGRCRRLRPATSAFLSSASTSQPRQNQDKSTRHSP
YMGVHWHRANKRWIAEVRHQGTRVLYKSFVDEREAALAVDDMLRQIFGEA
ILTNFHKATGVFLDPRQAFAMPTDEKEMDDMGGTNSTSNSNSNIPSHNAN
AGVSFVQALSKYKAVIKQHGRPLLLGLFPTKSQALAAIKEKTAPVGRGGM
AAAPKQSRFLGLSWDTHHKRWMARLHHEGIRVLSRTFKEEMEEEAARVYD
QYARRYHGEEALVNFDHNGVFLDPKNRVTRVDTSSNTTNTNTSTRNCSSS
SGNGSGSSSSSNTPGDVDYRGLSWSKEMQKWHAQIQVAGRVYNLGYHSNP
ETAALLYDAAAREHHGARARCNFDEQGMRTNVRIKLNNTAGAMSRYVLRT
PYEK*

mRNA from alignment at scaffold_8:937820..939610+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4145 ID=mRNA_4145|Name=jgi.p|Nanoce1779_2|586699|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp|location=Sequence derived from alignment at scaffold_8:937820..939610+ (Nannochloropsis oceanica)
GAATCGGAGAACTCAAGACTCGGAGGGAGTAGCTCACCCGCTAAGCACGT
ACGGCGTAAAGTGCGGGTCCTCTAATTGCATCAGAGGAATAGGAACGCCT
CCAAACTGAATAAGAAAACATGCTTATGTGGGTCAAGACACAGTTGTGAA
TGCGAAGGCAGCGGGGGCCGTATTGCTTCTATGGCGAATGTGAAGATGGG
GGGTACTTTGAAGAAAAGAGGAGCTGTCTTCAAGGGTGGACACATCGATA
AGCATGTTCAGTGTCATGGTGAAATATATTTGTGAGAGAGGATATACCAA
AGCGCATTTGAGATGTTGAATTCATCCTTCCATCTCACACACGGCCGCCT
CGCATTTTACCAACAGCTTACCCTTAACATTGATGCAGCAAACTTCATTG
CTTCTCCGGCCGATGCTGCTGTCTTACTGTGGCCGCTGTCGTCGTCTTCG
CCCCGCCACATCTGCCTTCCTCTCGTCCGCTTCGACTTCACAACCCCGAC
AAAATCAAGACAAATCCACGCGCCACTCGCCCTACATGGGTGTGCACTGG
CACCGCGCTAACAAGCGGTGGATCGCCGAAGTCCGGCATCAGGGCACGCG
CGTCCTCTACAAGTCCTTTGTAGATGAGAGAGAAGCTGCTTTGGCCGTGG
ATGATATGCTGAGACAAATTTTTGGGGAGGCCATCTTGACCAACTTTCAC
AAAGCCACCGGCGTGTTCCTCGACCCACGGCAAGCGTTCGCCATGCCGAC
AGATGAGAAAGAAATGGATGACATGGGCGGCACCAACAGCACCAGCAACA
GCAACAGCAATATCCCATCCCACAATGCTAATGCCGGCGTCTCGTTTGTG
CAAGCCCTGAGCAAATACAAAGCCGTCATTAAACAACACGGCCGTCCCCT
CCTCCTTGGCCTCTTTCCCACCAAAAGCCAAGCATTAGCAGCAATCAAAG
AGAAGACTGCGCCCGTCGGGAGAGGAGGCATGGCGGCCGCCCCCAAACAA
AGCCGGTTTCTGGGCCTATCGTGGGACACTCATCACAAGAGGTGGATGGC
AAGATTGCATCATGAGGGGATTCGGGTATTGTCTAGGACATTCAAGGAGG
AGATGGAGGAGGAGGCGGCACGAGTGTATGACCAATATGCGCGCAGGTAC
ACTCGGAGGGAAGGAGGAGGGAAGGAATGTTGATGGGAGGGATAAGGAGG
GGGATGGCAAAAGGGACTCACGCCTGCGGCACGCTCCATGAATTCTTTCA
TTCACTCCTTCGTTCATACAGGTACCACGGTGAGGAAGCCTTGGTCAATT
TCGATCACAACGGGGTATTTCTCGACCCCAAGAACCGTGTCACGCGCGTG
GATACAAGCAGCAACACCACCAACACCAACACCAGTACCAGAAACTGTAG
CAGTAGCAGTGGCAATGGCAGTGGCAGTAGCAGTAGCAGTAACACACCCG
GGGACGTCGACTATCGAGGCCTCTCCTGGTCCAAGGAAATGCAAAAGTGG
CACGCCCAGATTCAGGTTGCAGGCCGTGTGTACAATCTTGGGTACCATTC
AAACCCGGAAACGGCTGCTTTGTTGTATGATGCCGCCGCTCGTGAGCACC
ACGGGGCCCGGGCTCGGTGCAATTTTGATGAGCAGGGAATGAGGACTAAT
GTGAGGATTAAACTCAATAACACGGCGGGGGCAATGTCTCGGTATGTCTT
GCGGACGCCATATGAAAAATGAAAAGGGCGACAAGGTGGGCGACAAGGTG
TAGAGTAAGAGAGAAATGAAATTCAAAATGTGATCGAAGCA

Coding sequence (CDS) from alignment at scaffold_8:937820..939610+

>mRNA_4145 ID=mRNA_4145|Name=jgi.p|Nanoce1779_2|586699|organism=Nannochloropsis oceanica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_8:937820..939610+ (Nannochloropsis oceanica)
ATGCAGCAAACTTCATTGCTTCTCCGGCCGATGCTGCTGTCTTACTGTGG
CCGCTGTCGTCGTCTTCGCCCCGCCACATCTGCCTTCCTCTCGTCCGCTT
CGACTTCACAACCCCGACAAAATCAAGACAAATCCACGCGCCACTCGCCC
TACATGGGTGTGCACTGGCACCGCGCTAACAAGCGGTGGATCGCCGAAGT
CCGGCATCAGGGCACGCGCGTCCTCTACAAGTCCTTTGTAGATGAGAGAG
AAGCTGCTTTGGCCGTGGATGATATGCTGAGACAAATTTTTGGGGAGGCC
ATCTTGACCAACTTTCACAAAGCCACCGGCGTGTTCCTCGACCCACGGCA
AGCGTTCGCCATGCCGACAGATGAGAAAGAAATGGATGACATGGGCGGCA
CCAACAGCACCAGCAACAGCAACAGCAATATCCCATCCCACAATGCTAAT
GCCGGCGTCTCGTTTGTGCAAGCCCTGAGCAAATACAAAGCCGTCATTAA
ACAACACGGCCGTCCCCTCCTCCTTGGCCTCTTTCCCACCAAAAGCCAAG
CATTAGCAGCAATCAAAGAGAAGACTGCGCCCGTCGGGAGAGGAGGCATG
GCGGCCGCCCCCAAACAAAGCCGGTTTCTGGGCCTATCGTGGGACACTCA
TCACAAGAGGTGGATGGCAAGATTGCATCATGAGGGGATTCGGGTATTGT
CTAGGACATTCAAGGAGGAGATGGAGGAGGAGGCGGCACGAGTGTATGAC
CAATATGCGCGCAGGTACCACGGTGAGGAAGCCTTGGTCAATTTCGATCA
CAACGGGGTATTTCTCGACCCCAAGAACCGTGTCACGCGCGTGGATACAA
GCAGCAACACCACCAACACCAACACCAGTACCAGAAACTGTAGCAGTAGC
AGTGGCAATGGCAGTGGCAGTAGCAGTAGCAGTAACACACCCGGGGACGT
CGACTATCGAGGCCTCTCCTGGTCCAAGGAAATGCAAAAGTGGCACGCCC
AGATTCAGGTTGCAGGCCGTGTGTACAATCTTGGGTACCATTCAAACCCG
GAAACGGCTGCTTTGTTGTATGATGCCGCCGCTCGTGAGCACCACGGGGC
CCGGGCTCGGTGCAATTTTGATGAGCAGGGAATGAGGACTAATGTGAGGA
TTAAACTCAATAACACGGCGGGGGCAATGTCTCGGTATGTCTTGCGGACG
CCATATGAAAAATGAATGCAGCAAACTTCATTGCTTCTCCGGCCGATGCT
GCTGTCTTACTGTGGCCGCTGTCGTCGTCTTCGCCCCGCCACATCTGCCT
TCCTCTCGTCCGCTTCGACTTCACAACCCCGACAAAATCAAGACAAATCC
ACGCGCCACTCGCCCTACATGGGTGTGCACTGGCACCGCGCTAACAAGCG
GTGGATCGCCGAAGTCCGGCATCAGGGCACGCGCGTCCTCTACAAGTCCT
TTGTAGATGAGAGAGAAGCTGCTTTGGCCGTGGATGATATGCTGAGACAA
ATTTTTGGGGAGGCCATCTTGACCAACTTTCACAAAGCCACCGGCGTGTT
CCTCGACCCACGGCAAGCGTTCGCCATGCCGACAGATGAGAAAGAAATGG
ATGACATGGGCGGCACCAACAGCACCAGCAACAGCAACAGCAATATCCCA
TCCCACAATGCTAATGCCGGCGTCTCGTTTGTGCAAGCCCTGAGCAAATA
CAAAGCCGTCATTAAACAACACGGCCGTCCCCTCCTCCTTGGCCTCTTTC
CCACCAAAAGCCAAGCATTAGCAGCAATCAAAGAGAAGACTGCGCCCGTC
GGGAGAGGAGGCATGGCGGCCGCCCCCAAACAAAGCCGGTTTCTGGGCCT
ATCGTGGGACACTCATCACAAGAGGTGGATGGCAAGATTGCATCATGAGG
GGATTCGGGTATTGTCTAGGACATTCAAGGAGGAGATGGAGGAGGAGGCG
GCACGAGTGTATGACCAATATGCGCGCAGGTACCACGGTGAGGAAGCCTT
GGTCAATTTCGATCACAACGGGGTATTTCTCGACCCCAAGAACCGTGTCA
CGCGCGTGGATACAAGCAGCAACACCACCAACACCAACACCAGTACCAGA
AACTGTAGCAGTAGCAGTGGCAATGGCAGTGGCAGTAGCAGTAGCAGTAA
CACACCCGGGGACGTCGACTATCGAGGCCTCTCCTGGTCCAAGGAAATGC
AAAAGTGGCACGCCCAGATTCAGGTTGCAGGCCGTGTGTACAATCTTGGG
TACCATTCAAACCCGGAAACGGCTGCTTTGTTGTATGATGCCGCCGCTCG
TGAGCACCACGGGGCCCGGGCTCGGTGCAATTTTGATGAGCAGGGAATGA
GGACTAATGTGAGGATTAAACTCAATAACACGGCGGGGGCAATGTCTCGG
TATGTCTTGCGGACGCCATATGAAAAATGA

Synonyms

Publications