NO10G00750, NO10G00750 (gene) Nannochloropsis oceanica

Overview
NameNO10G00750
Unique NameNO10G00750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1497
Alignment locationchr10:248195..249691 -

Link to JBrowse

Properties
Property NameValue
DescriptionAp2 ethylene-responsive transcription factor ant-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:248195..249691 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom
IPR001471AP2/ERF_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO10G00750 vs. NCBI_GenBank
Match: EWM25312.1 (ap2 ethylene-responsive transcription factor ant-like protein [Nannochloropsis gaditana])

HSP 1 Score: 367.1 bits (941), Expect = 7.100e-98
Identity = 189/353 (53.54%), Postives = 239/353 (67.71%), Query Frame = 0
Query:   52 MGVHWHRANKRWIAEVRHQGTRVLYKSFVDEREAALAVDDMLRQIFGEAILTNFHKATGVFLDPRQAFAMPTDEKEMDDMGGTNSTSNSNSNIPSHNANAGVSFVQALSKYKAVIKQHGRPLLLGLFPTKSQALAAIKEKTAPVGRGGMAAAPKQSRFLGLSWDTHHKRWMARLHHEGIRVLSRTFKEEMEEEAARVYDQYARRYHGEEALVNFDHNGVFLDPKNRVTRVDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDVDYRGLSWSKEMQKWHAQIQVAGRVYNLGYHSNPETAALLYDAAAREHHGARARCNFDEQGMRTNVRIKLNNTAGAMSRYVLRTPYEK 405
            MGV+W+  N RWIAEVRH+  R+L+++F DE EAA A+D +LRQ FGE ILTNFH  +GVFLDP+ AF              T S+S+ + N  +  A   V++V+ L  YKAVIK  GRP L+GLF ++ QA+A IK+KT P  +GGM+ +PKQSRFLG+SWD HHK+W ARL+H+G RVLS+TFKE+ EEEAA VYD YARRYHG+ A VNFD NG FLDPKNR TR+D S                               ++D+RG+SWSKE  KW+AQI+VAGR +NLGY S+ + AAL YD AAR++HG  ARCNFD QG RT VR+KLNN+A A  +Y +R   +K
Sbjct:    1 MGVNWNGKNNRWIAEVRHKKQRLLHRAFSDEEEAAHAIDRVLRQHFGETILTNFHHPSGVFLDPKHAFVTKV---------STGSSSSCSDNTFTSTATWAVTYVEGLRLYKAVIKLRGRPHLIGLFSSRDQAIAVIKKKTQPREKGGMSKSPKQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQ-----------------------NMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDLQGNRTQVRMKLNNSAAAKVKYTVRENSDK 321          
BLAST of NO10G00750 vs. NCBI_GenBank
Match: XP_005853579.1 (aintegumenta-like protein [Nannochloropsis gaditana CCMP526] >EKU22783.1 aintegumenta-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 231.9 bits (590), Expect = 3.600e-57
Identity = 115/205 (56.10%), Postives = 141/205 (68.78%), Query Frame = 0
Query:  200 MAAAPKQSRFLGLSWDTHHKRWMARLHHEGIRVLSRTFKEEMEEEAARVYDQYARRYHGEEALVNFDHNGVFLDPKNRVTRVDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDVDYRGLSWSKEMQKWHAQIQVAGRVYNLGYHSNPETAALLYDAAAREHHGARARCNFDEQGMRTNVRIKLNNTAGAMSRYVLRTPYEK 405
            M+ +PKQSRFLG+SWD HHK+W ARL+H+G RVLS+TFKE+ EEEAA VYD YARRYHG+ A VNFD NG FLDPKNR TR+D S                               ++D+RG+SWSKE  KW+AQI+VAGR +NLGY S+ + AAL YD AAR++HG  ARCNFD QG RT VR+KLNN+A A  +Y +R   +K
Sbjct:    1 MSKSPKQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQ-----------------------NMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDLQGNRTQVRMKLNNSAAAKVKYTVRENSDK 182          
BLAST of NO10G00750 vs. NCBI_GenBank
Match: PNW70669.1 (hypothetical protein CHLRE_17g729600v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 82.4 bits (202), Expect = 3.500e-12
Identity = 56/180 (31.11%), Postives = 79/180 (43.89%), Query Frame = 0
Query:  200 MAAAPKQSRFLGLSWDTHHKRWMARLHHEGIRVLSRTFKE------EMEEEAARVYDQYARRYHGEEALVNFDHNGVFLDPKNRVTRVDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDVDYRGLSWSKEMQKWHAQIQVAGRVYNLGYHSNPETAALLYDAAAREHHGARARCNF 374
            M  AP++SR+ G+SWD   K+W A+     +++    +K       E EE+AA  YD    +  G+ A +N         P +   R +                                G   YRG++W K   KW A+I+ AG+  +LGY  N E AA  YDAAAR  HGA A+ NF
Sbjct:    1 MDEAPRKSRYRGVSWDKRRKKWQAQYK---VKITGGVWKNLHGTLCEREEDAAEQYDAIVYKLRGDAAQLN--------APLSEERRAELD---------EFASVENLIHSWQQTAAKHASGASSYRGVTWHKGKGKWMAKIRDAGKTVHLGYFDNQEEAARAYDAAARRLHGAAAKLNF 160          
BLAST of NO10G00750 vs. NCBI_GenBank
Match: OGV08692.1 (hypothetical protein A2299_16350 [Ignavibacteria bacterium RIFOXYB2_FULL_37_11] >OGV13479.1 hypothetical protein A2237_17045 [Ignavibacteria bacterium RIFOXYA2_FULL_38_8] >OGV14770.1 hypothetical protein A2440_09730 [Ignavibacteria bacterium RIFOXYC2_FULL_38_25] >OGV22305.1 hypothetical protein A2499_04980 [Ignavibacteria bacterium RIFOXYC12_FULL_38_8] >OGV79263.1 hypothetical protein A2X65_02100 [Melioribacter sp. GWF2_38_21])

HSP 1 Score: 80.5 bits (197), Expect = 1.300e-11
Identity = 81/330 (24.55%), Postives = 134/330 (40.61%), Query Frame = 0
Query:   49 SPYMGVHWHRANKRWIAEVRHQGTRVLYKSFVDEREAALAVDDMLRQIFGEAILTNFHKATGVFLDPRQAFAMPTDEKEMDDMGGTNSTSNSNSNIPSHNANAGVSFVQALSKYKAVIKQHGRPLLLGLFPTKSQALAAIKE-----------------KTAPVGRGGMAAAPKQSRFLGLSWDTHHKRWMARLHHEGIRVLSRTFKEEMEEEAARVYDQYARRYHGEEALVNFDHNGVFLDPKNRVTRVDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDVDYRGLSWSKEMQKWHAQIQVAGRVYNLGYHSNPETAALLYDAAA 362
            S Y GV + +A K+W A + + G +     F  E +AA A D ++     +    NF       +D  +A   P + +    + G      S+  +       GV +   L K+KA I  + + + +G F ++++A +A  +                  +AP     +   P  S + G+    H   W+A++     RV SR +K E+  EAA  YD+ AR YHGE+A  NF    +    + R  +                                 P    Y+G+S+ K  ++W AQI++ G+   LGY+     AAL Y+A A
Sbjct:   25 SKYAGVSYRKARKKWCANIYYDGKQQWVGYFEKEIDAAKAYDKVMAYYNADVHKMNF------AIDLAEA---PNNIRRRIRVAGKIKRKASSIYL-------GVHYSDRLHKWKAEISHNKQCIHIGFFNSETEAASAYDKVARYYHGENAVTNFEGHHSAPASFIKLERHPVTSHYRGVC--RHKNIWLAQIKVHRKRVWSREYKTEV--EAAEGYDRAARYYHGEKAQTNFSGTAILSHVEIRKEK--------------------------------CPSTSSYKGVSYCKRDKRWIAQIKLNGKTKYLGYYKMELEAALAYNAEA 302          
BLAST of NO10G00750 vs. NCBI_GenBank
Match: PNH06180.1 (AP2-like ethylene-responsive transcription factor AIL5 [Tetrabaena socialis])

HSP 1 Score: 70.9 bits (172), Expect = 1.100e-8
Identity = 54/171 (31.58%), Postives = 71/171 (41.52%), Query Frame = 0
Query:  207 SRFLGLSWDTHHKRWMARLHHEGIRVLSRTFKEEMEEEAARVYDQYARRYHGEEALVNFDHNGVFLDPKNRVTRVDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDVDYRGLSWSKEMQKWHAQIQVAGRVYNLGYHSNPETAALLYDAAAREHHGARARCNFDEQG 378
            S+F G+SW    ++W   +     R +      E EE+AAR  D  A +  G  A +NF+     L  + R                                     G   YRG+SW K   KW AQIQ  G+   LGY +    AAL YDAAAR+ HGA+A+ NF   G
Sbjct:    5 SQFRGVSWHIKSQKWQCYITVGKERRIGT--NHEREEDAARQRDSMAYKAFGAAAQLNFE-----LSAEQRA-------------ELDAMTFEELIASFRVASERFSSGASAYRGVSWDKASGKWRAQIQEDGKRKGLGYFTEELQAALAYDAAARKLHGAKAKLNFPHGG 155          
BLAST of NO10G00750 vs. NCBI_GenBank
Match: XP_005650330.1 (hypothetical protein COCSUDRAFT_64835 [Coccomyxa subellipsoidea C-169] >EIE25786.1 hypothetical protein COCSUDRAFT_64835 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 69.7 bits (169), Expect = 2.300e-8
Identity = 73/270 (27.04%), Postives = 102/270 (37.78%), Query Frame = 0
Query:  174 LLGLF--PTKSQALAAIKEKTAPVGR-------GGMAAAPKQSRFLGLSWDTHHKRWMARLHHEG-IRVLSRTFKEEMEEEAARVYDQYARRYHGEEALVNFD--HNGVFLDPKNRVT---RVDTS--------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDVDYRGLSWSKEMQKWHAQIQV---AGRVYNLGYHSNPETAALLYDAAAREHHGARARCNFDEQGMRTNVRIK-LNNTAGA 393
            L GLF  P  S+  A +    A   R       GG A APK S + G+SW  H ++W A +   G +R L      +++E+AAR YD  AR+ HG++A+VNF    + V  +PKNR       DTS                                                             P    +RG+SW K  + W   I V   A   Y++GY +    AA  YD    +  G  A  NF +  M  +  +K L + A A
Sbjct:  518 LAGLFTKPASSEEPAPVVSAAATNSRGARSVRSGGSADAPKSSAYKGVSWHKHSQKWYAYIQAAGKMRGLGYF---DLQEDAARAYDAEARKVHGKKAVVNFRMYPDDVVREPKNRGVSSGSADTSGPSLEALPSASISIGEDKPSARPASGPRSRGGRSERLCGKRDRAGSPTSEEVSRGTPRVGGPRSSKFRGVSWHKHRRMWQVYIHVQSQARNSYHMGYFAEEIDAAKAYDREILKVRGKDAVTNFPDSEMSGDAELKSLEHVAAA 784          
The following BLAST results are available for this feature:
BLAST of NO10G00750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM25312.17.100e-9853.54ap2 ethylene-responsive transcription factor ant-l... [more]
XP_005853579.13.600e-5756.10aintegumenta-like protein [Nannochloropsis gaditan... [more]
PNW70669.13.500e-1231.11hypothetical protein CHLRE_17g729600v5 [Chlamydomo... [more]
OGV08692.11.300e-1124.55hypothetical protein A2299_16350 [Ignavibacteria b... [more]
PNH06180.11.100e-831.58AP2-like ethylene-responsive transcription factor ... [more]
XP_005650330.12.300e-827.04hypothetical protein COCSUDRAFT_64835 [Coccomyxa s... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000935NSK000935Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00750.1NO10G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586699gene_4145Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100135g5gene5201Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00750.1NO10G00750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00750 ID=NO10G00750|Name=NO10G00750|organism=Nannochloropsis oceanica|type=gene|length=1497bp
TTTTACCAACAGCTTACCCTTAACATTGATGCAGCAAACTTCATTGCTTC
TCCGGCCGATGCTGCTGTCTTACTGTGGCCGCTGTCGTCGTCTTCGCCCC
GCCACATCTGCCTTCCTCTCGTCCGCTTCGACTTCACAACCCCGACAAAA
TCAAGACAAATCCACGCGCCACTCGCCCTACATGGGTGTGCACTGGCACC
GCGCTAACAAGCGGTGGATCGCCGAAGTCCGGCATCAGGGCACGCGCGTC
CTCTACAAGTCCTTTGTAGATGAGAGAGAAGCTGCTTTGGCCGTGGATGA
TATGCTGAGACAAATTTTTGGGGAGGCCATCTTGACCAACTTTCACAAAG
CCACCGGCGTGTTCCTCGACCCACGGCAAGCGTTCGCCATGCCGACAGAT
GAGAAAGAAATGGATGACATGGGCGGCACCAACAGCACCAGCAACAGCAA
CAGCAATATCCCATCCCACAATGCTAATGCCGGCGTCTCGTTTGTGCAAG
CCCTGAGCAAATACAAAGCCGTCATTAAACAACACGGCCGTCCCCTCCTC
CTTGGCCTCTTTCCCACCAAAAGCCAAGCATTAGCAGCAATCAAAGAGAA
GACTGCGCCCGTCGGGAGAGGAGGCATGGCGGCCGCCCCCAAACAAAGCC
GGTTTCTGGGCCTATCGTGGGACACTCATCACAAGAGGTGGATGGCAAGA
TTGCATCATGAGGGGATTCGGGTATTGTCTAGGACATTCAAGGAGGAGAT
GGAGGAGGAGGCGGCACGAGTGTATGACCAATATGCGCGCAGgtacactc
ggagggaaggaggagggaaggaatgttgatgggagggataaggaggggga
tggcaaaagggactcacgcctgcggcacgctccatgaattctttcattca
ctccttcgttcatacagGTACCACGGTGAGGAAGCCTTGGTCAATTTCGA
TCACAACGGGGTATTTCTCGACCCCAAGAACCGTGTCACGCGCGTGGATA
CAAGCAGCAACACCACCAACACCAACACCAGTACCAGAAACTGTAGCAGT
AGCAGTGGCAATGGCAGTGGCAGTAGCAGTAGCAGTAACACACCCGGGGA
CGTCGACTATCGAGGCCTCTCCTGGTCCAAGGAAATGCAAAAGTGGCACG
CCCAGATTCAGGTTGCAGGCCGTGTGTACAATCTTGGGTACCATTCAAAC
CCGGAAACGGCTGCTTTGTTGTATGATGCCGCCGCTCGTGAGCACCACGG
GGCCCGGGCTCGGTGCAATTTTGATGAGCAGGGAATGAGGACTAATGTGA
GGATTAAACTCAATAACACGGCGGGGGCAATGTCTCGGTATGTCTTGCGG
ACGCCATATGAAAAATGAAAAGGGCGACAAGGTGGGCGACAAGGTGTAGA
GTAAGAGAGAAATGAAATTCAAAATGTGATCGAAGCATCATTGAGGGATA
ATGCGAATGACGAGAGGACTCTCAGAAGCAGTTCCTGATGTTAAAAA
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protein sequence of NO10G00750.1

>NO10G00750.1-protein ID=NO10G00750.1-protein|Name=NO10G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MQQTSLLLRPMLLSYCGRCRRLRPATSAFLSSASTSQPRQNQDKSTRHSP
YMGVHWHRANKRWIAEVRHQGTRVLYKSFVDEREAALAVDDMLRQIFGEA
ILTNFHKATGVFLDPRQAFAMPTDEKEMDDMGGTNSTSNSNSNIPSHNAN
AGVSFVQALSKYKAVIKQHGRPLLLGLFPTKSQALAAIKEKTAPVGRGGM
AAAPKQSRFLGLSWDTHHKRWMARLHHEGIRVLSRTFKEEMEEEAARVYD
QYARRYHGEEALVNFDHNGVFLDPKNRVTRVDTSSNTTNTNTSTRNCSSS
SGNGSGSSSSSNTPGDVDYRGLSWSKEMQKWHAQIQVAGRVYNLGYHSNP
ETAALLYDAAAREHHGARARCNFDEQGMRTNVRIKLNNTAGAMSRYVLRT
PYEK*
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Synonyms
Publications