jgi.p|Nanoce1779_2|552743, gene_3400 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|552743
Unique Namegene_3400
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:218560..220647 -

Link to JBrowse

Properties
Property NameValue
TranscriptId552829
ProteinId552743
Product nameP-loop containing nucleoside triphosphate hydrolase protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:218560..220647 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0008186RNA-dependent ATPase activity
GO:0015462ATPase-coupled protein transmembrane transporter activity
GO:0016887ATPase activity
GO:0017116single-stranded DNA-dependent ATP-dependent DNA helicase activity
GO:0042623ATPase activity, coupled
GO:0042625ATPase coupled ion transmembrane transporter activity
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0017111nucleoside-triphosphatase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00700NO08G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552743mRNA_3400-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552743mRNA_3400Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|552743

>mRNA_3400-protein ID=mRNA_3400-protein|Name=jgi.p|Nanoce1779_2|552743|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MVCKTSVPRPGNPISRTKEEVTALAQNRHEHALVPNVISPTDIGVTYQEI
GGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLA
KAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDE
VDSILSSRDQGEDTKYNTITSVKTTFMQEWDGLRTTSDRVIVVASTNRPY
ALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRL
DGYTGSDIREVCREAVVRIAHEESKKLDEAQGVEVGSLGQRLRPVEKADF
DAALEKLSASVAARGRELERVREWNNQFGEVRKKVRPPHMSMYV*
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Synonyms
Publications