NO08G00700, NO08G00700 (gene) Nannochloropsis oceanica

Overview
NameNO08G00700
Unique NameNO08G00700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1382
Alignment locationchr8:238236..239617 -

Link to JBrowse

Properties
Property NameValue
DescriptionKatanin p60 atpase-containing subunit
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:238236..239617 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003959ATPase_AAA_core
IPR003593AAA+_ATPase
Homology
BLAST of NO08G00700 vs. NCBI_GenBank
Match: EWM26552.1 (katanin p60 atpase-containing subunit [Nannochloropsis gaditana])

HSP 1 Score: 643.7 bits (1659), Expect = 3.400e-181
Identity = 325/344 (94.48%), Postives = 336/344 (97.67%), Query Frame = 0
Query:    1 MVCKTSVPRPGNPISRTKEEVTALAQNRHEHALVPNVISPTDIGVTYQEIGGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDEVDSILSSRDQGEDTKYNTITSVKTTFMQEWDGLRTTSDRVIVVASTNRPYALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRLDGYTGSDIREVCREAVVRIAHEESKKLDEAQGVEVGSLGQRLRPVEKADFDAALEKLSASVAARGRELERVREWNNQFGEVRKKVRPPHMSMYV 345
            MVCKTSVPRPG P+SRTKEEVTALAQNRHEHALV NVISP DIGVTY EIGGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCV+YLDEVDSILSSRDQGEDTKYNTITSVKTTFMQEWDGLRTT+DRVIVVASTNRPYALDQAVLRRMPRRILVDLPDQ TREDML KIL++NR+AP VNLTSIA+RL+GYTGSDIREVCREAVVRIAHEESKKLD+AQGVEVG+LGQRLRPVEKADFDAALEKLSASVAARGRELERVREWNN FGEVRKKV+PPHMSMYV
Sbjct:  393 MVCKTSVPRPGVPVSRTKEEVTALAQNRHEHALVGNVISPADIGVTYGEIGGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVVYLDEVDSILSSRDQGEDTKYNTITSVKTTFMQEWDGLRTTNDRVIVVASTNRPYALDQAVLRRMPRRILVDLPDQKTREDMLQKILANNRIAPEVNLTSIAKRLEGYTGSDIREVCREAVVRIAHEESKKLDDAQGVEVGALGQRLRPVEKADFDAALEKLSASVAARGRELERVREWNNLFGEVRKKVQPPHMSMYV 736          
BLAST of NO08G00700 vs. NCBI_GenBank
Match: CBN73875.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 466.5 bits (1199), Expect = 7.300e-128
Identity = 245/352 (69.60%), Postives = 290/352 (82.39%), Query Frame = 0
Query:    2 VCKTSVPRPGNPISRTKEEVTALAQ-NRHEHALVPNVISPTDIGVTYQEIGGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPP-GTGKTMLAKAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDEVDSILSSRDQGEDTKYNTITSVKTTFMQEWDGLRTTSDRVIVVASTNRPYALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRLDGYTGSDIREVCREAVVRIAHEESKKLDEA--QGV-EVGSLGQRLRPVEKADFDAALEKLSASVAARGRELERVREWNNQFGEVRKKVRPP----HMSMYV 345
            VCK  VPRPG P+SRT+EEVTALAQ +RHE ALV NVI P DIGVTY  IGGL   KE LRQC+TYPLRFPHLYSEGIA ++VKGVLLFGPP G G+TMLAKAVATEGGATFLSVDASVIE+KWLGESEKNA+AVFTLARRLAPCVI++DEVDS+LSSR++ +DT + T+TSVKTT MQEWDGLRT  DRV+V+ASTNRP+ LD+AVLRR+PRRILVDLPD  TRE++L   ++ NRV  +VN T+I   L+G+TGSDI+EVCREAVVRIAHE++++LD A   GV E   L  +LRPV   DF  A +KL+ASV+ +GREL RV EWN ++GEV+KK RP     H+SMY+
Sbjct:    8 VCKAYVPRPGQPMSRTREEVTALAQHDRHEQALVTNVILPKDIGVTYDMIGGLGGAKELLRQCITYPLRFPHLYSEGIAKEAVKGVLLFGPPGGRGRTMLAKAVATEGGATFLSVDASVIENKWLGESEKNARAVFTLARRLAPCVIFIDEVDSVLSSREKYDDTTHGTLTSVKTTLMQEWDGLRTGGDRVVVIASTNRPFDLDEAVLRRLPRRILVDLPDAETREEILKVSMAQNRVDASVNFTAITEELEGFTGSDIKEVCREAVVRIAHEKAQELDRAGVNGVREEVDLTAQLRPVTMDDFWEARKKLTASVSEKGRELSRVWEWNEEYGEVKKK-RPDASAHHLSMYL 358          
BLAST of NO08G00700 vs. NCBI_GenBank
Match: CEL97961.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 453.8 bits (1166), Expect = 4.900e-124
Identity = 223/358 (62.29%), Postives = 284/358 (79.33%), Query Frame = 0
Query:    7 VPRPGNPISRTKEEVTALAQNRHEHALVPNVISPTDIGVTYQEIGGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDEVDSILSSRDQGEDTKYNTITSVKTTFMQEWDGLRTTSDRVIVVASTNRPYALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRLDGYTGSDIREVCREAVVRIAHEESKKLDE---------------AQGVEVGSLGQRLRPVEKADFDAALEKLSASVAARGRELERVREWNNQFGEVRKKVR-----PPHMSMYV 345
            VPRPG P+ R++EEV +LA N+HE +LV NV+SP DI VTY +IGGL +VKE LR+C+TYPL++PHLY EGIA ++VKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDAS +E+ WLGESEK AKAVFTLAR+LAPCVI+LDEVDS+LSSRD+G+DT + T+TS+KTT MQEWDGLRTT DRV+V+ STNRP+ALD+AVLRRMPRRILVDLPD  TRE++L   LS+NR+AP VN+T +A +++GYTGSDI+EVCR+ V +I+HE++++L+                  G +  +    LRPV   D   A++KLSASV   GRELER+ EWN+++GE+++K       P H+S+Y+
Sbjct:  833 VPRPGEPVVRSREEVASLASNKHEKSLVANVVSPQDIHVTYDQIGGLEEVKELLRECITYPLKYPHLYQEGIAEEAVKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDASSVENMWLGESEKMAKAVFTLARKLAPCVIFLDEVDSLLSSRDRGDDTTHGTLTSLKTTLMQEWDGLRTTRDRVVVIGSTNRPFALDEAVLRRMPRRILVDLPDNKTREEILRVTLSNNRLAPDVNVTDLALQMEGYTGSDIKEVCRDGVTKISHEQARQLESHLRKEGNVPSAPASGVMGDQAIASPTELRPVTADDLKQAMKKLSASVNQSGRELERMWEWNDKYGEIKRKAMKRKPWPNHLSVYL 1190          
BLAST of NO08G00700 vs. NCBI_GenBank
Match: GAX13425.1 (hypothetical protein FisN_34Lh023 [Fistulifera solaris])

HSP 1 Score: 443.4 bits (1139), Expect = 6.700e-121
Identity = 233/352 (66.19%), Postives = 282/352 (80.11%), Query Frame = 0
Query:    6 SVPRPGNPISRTKEEVTALAQNRHEHALVPNVISPTDIGVTYQEIGGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDEVDSILSSRD-QGEDTKYNTITSVKTTFMQEWDGLRT----TSDRVIVVASTNRPYALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRLDGYTGSDIREVCREAVVRIAHEESKKLDEA-QGV----EVGSLGQRLRPVEKADFDAALEKLSASVAARGRELERVREWNNQFGEVRK--KVRPPHM-SMYV 345
            S+   G    RT+EE+TALAQ++HE AL+  V+SP DIGVTY  IGGL++VKE LRQ +TYPL++PHLYSEGIA ++VKGVLLFGPPGTGKTMLAKAVATEGGA+FLSVDAS +E+KWLGESEKNAKAVFTLARRLAPCVI++DEVDS+LSSR+   +D+ + T+TSVKTT M EWDGL +    + DRV+V+ STNRP+ LD+AVLRR PRRILVDLPD  TR ++L   L+ NR+ PAVN T IA RL+GYTGSDI+EVCREAVV+I+HE++K+LDE  QGV     VGSL QRLRPV   DF+ AL KL  SV+  GREL RV EWN ++GEV+K  K   PH+ SMY+
Sbjct:  938 SLSGAGTVAHRTREEITALAQDKHERALISQVVSPQDIGVTYDMIGGLSEVKELLRQSITYPLKYPHLYSEGIAREAVKGVLLFGPPGTGKTMLAKAVATEGGASFLSVDASSVENKWLGESEKNAKAVFTLARRLAPCVIFIDEVDSLLSSREGSSDDSAHGTLTSVKTTMMSEWDGLNSGTNGSGDRVVVIGSTNRPFDLDEAVLRRFPRRILVDLPDLKTRSEILEVTLAENRIDPAVNFTKIAERLEGYTGSDIKEVCREAVVQISHEQAKQLDEGLQGVRMDTSVGSL-QRLRPVTMEDFEKALSKLKRSVSENGRELARVWEWNAEYGEVKKMDKNHLPHLASMYL 1288          
BLAST of NO08G00700 vs. NCBI_GenBank
Match: GAX11255.1 (hypothetical protein FisN_34Hh023 [Fistulifera solaris])

HSP 1 Score: 442.6 bits (1137), Expect = 1.100e-120
Identity = 237/365 (64.93%), Postives = 289/365 (79.18%), Query Frame = 0
Query:    1 MVCK-TSVPRPGNPIS-------RTKEEVTALAQNRHEHALVPNVISPTDIGVTYQEIGGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDEVDSILSSRD-QGEDTKYNTITSVKTTFMQEWDGLRT----TSDRVIVVASTNRPYALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRLDGYTGSDIREVCREAVVRIAHEESKKLDEA-QGV----EVGSLGQRLRPVEKADFDAALEKLSASVAARGRELERVREWNNQFGEVRK--KVRPPHM-SMYV 345
            MVC+ +S P  G  +S       RT+EE+TALAQ++HE AL+  V+SP DIGVTY  IGGL++VKE LRQ +TYPL++PHLYSEGIA ++VKGVLLFGPPGTGKTMLAKAVATEGGA+FLSVDAS +E+KWLGESEKNAKAVFTLARRLAPCVI++DEVDS+LSSR+   +D+ + T+TSVKTT M EWDGL +    + DRV+V+ STNRP+ LD+AVLRR PRRILVDLPD  TR ++L   L+ NR+ PAVN T IA RL+GYTGSDI+EVCREAVV+I+HE++K+LDE  QGV     VGSL QRLRPV   DF+ AL KL  SV+  GREL RV EWN ++GEV+K  K   PH+ +MY+
Sbjct:  922 MVCRISSSPSGGLSLSGAGTVAHRTREEITALAQDKHERALISQVVSPQDIGVTYDMIGGLSEVKELLRQSITYPLKYPHLYSEGIAREAVKGVLLFGPPGTGKTMLAKAVATEGGASFLSVDASSVENKWLGESEKNAKAVFTLARRLAPCVIFIDEVDSLLSSREGSSDDSAHGTLTSVKTTMMSEWDGLNSGTNGSGDRVVVIGSTNRPFDLDEAVLRRFPRRILVDLPDLKTRSEILEVTLAENRIDPAVNFTKIAERLEGYTGSDIKEVCREAVVQISHEQAKQLDEGLQGVRMDTSVGSL-QRLRPVTVEDFEKALSKLKRSVSENGRELARVWEWNAEYGEVKKMDKDHLPHLANMYL 1285          
BLAST of NO08G00700 vs. NCBI_GenBank
Match: EJK76019.1 (hypothetical protein THAOC_02237 [Thalassiosira oceanica])

HSP 1 Score: 428.3 bits (1100), Expect = 2.200e-116
Identity = 220/348 (63.22%), Postives = 272/348 (78.16%), Query Frame = 0
Query:   16 RTKEEVTALAQNRHEHALVPNVISPTDIGVTYQEIGGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDEVDSILSSRD-QGEDTKYNTITSVKTTFMQEWDGLRT--------TSDRVIVVASTNRPYALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRLDGYTGSDIREVCREAVVRIAHEESKKLDEAQGVEVGSLG---------QRLRPVEKADFDAALEKLSASVAARGRELERVREWNNQFGEVRKKVR---PPHMSM 343
            RT+E++ ALAQ++HE ALVPN +SP DIGVTY  IGGL +VKE LRQ +TYPL+FPHLYSEGIA ++VKGVLLFGPPGTGKTMLAKAVATEGGA+FLSVDAS +E+KWLGESEKNAKAVFTLARRLAPCV+++DEVDS+LSSR+   +D+ + T+TSVKTT M EWDGL +         SDRV+V+ STNRP+ LD+AVLRR PRRILVDLPD  TR ++L   LS NR+   VNLT IA RLDGYTGSD++EVCREAVV+I+HE+++ LD  + ++    G         Q LRPV   DF++A+ KL  SV+  GREL +V EWN+++GE++KK R   PP M+M
Sbjct: 1385 RTREDLMALAQDKHERALVPNCVSPRDIGVTYDMIGGLGEVKELLRQSITYPLKFPHLYSEGIAREAVKGVLLFGPPGTGKTMLAKAVATEGGASFLSVDASSVENKWLGESEKNAKAVFTLARRLAPCVVFIDEVDSLLSSREGSSDDSAHGTLTSVKTTMMSEWDGLNSGTNGKGDGGSDRVVVIGSTNRPFDLDEAVLRRFPRRILVDLPDLETRREILEVTLSENRLGGDVNLTLIAERLDGYTGSDLKEVCREAVVQISHEQARMLDRGEILDEDDEGYVDTSGAGFQMLRPVTMKDFESAMRKLKRSVSETGRELAKVWEWNDEYGEMKKKRRDLLPPMMNM 1732          
BLAST of NO08G00700 vs. NCBI_GenBank
Match: XP_002286946.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED96587.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 421.0 bits (1081), Expect = 3.500e-114
Identity = 213/333 (63.96%), Postives = 264/333 (79.28%), Query Frame = 0
Query:   16 RTKEEVTALAQNRHEHALVPNVISPTDIGVTYQEIGGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDEVDSILSSRD-QGEDTKYNTITSVKTTFMQEWDGLRT--------TSDRVIVVASTNRPYALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRLDGYTGSDIREVCREAVVRIAHEESKKLDEAQGVE---------VGSLGQRLRPVEKADFDAALEKLSASVAARGRELERVREWNNQFGE 331
            R+KE++ ALAQ++HE AL+PN +SP DIGVTY  IGGL DVKE LRQ +TYPL+FPHLYSEGIA ++VKGVLL+GPPGTGKTMLAKAVATEGGA+FLSVDAS +E+KWLGESEKNAKAVFTLARRLAPCVI++DEVDS+LSSR+   +D+ + T+TSVKTT M EWDGL +         SDRV+V+ STNRP+ LD+AVLRR PRRILVDLPD  TR ++L   LS NR+   VNLT IA RL+GYTGSD++EVCREAVV+I+HE+++ LD  + ++          G+  Q LRPV   DF++A+ KL  SV+  GREL+RV EWN+++GE
Sbjct:   12 RSKEDLMALAQDKHERALIPNCVSPNDIGVTYDMIGGLTDVKELLRQSITYPLKFPHLYSEGIAREAVKGVLLYGPPGTGKTMLAKAVATEGGASFLSVDASSVENKWLGESEKNAKAVFTLARRLAPCVIFIDEVDSLLSSREGSSDDSAHGTLTSVKTTMMSEWDGLNSGTNGKGDAGSDRVVVIGSTNRPFDLDEAVLRRFPRRILVDLPDLETRREILEVTLSENRLGSDVNLTMIAERLEGYTGSDLKEVCREAVVQISHEQARMLDRGELLDDSDDETDGFTGAGFQMLRPVTMKDFESAMRKLKRSVSETGRELQRVWEWNDEYGE 344          
BLAST of NO08G00700 vs. NCBI_GenBank
Match: XP_002177425.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51888.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 418.3 bits (1074), Expect = 2.300e-113
Identity = 218/338 (64.50%), Postives = 269/338 (79.59%), Query Frame = 0
Query:   24 LAQNRHEHALVPNVISPTDIGVTYQEIGGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDEVDSILSSRD-QGEDTKYNTITSVKTTFMQEWDGLRT--------TSDRVIVVASTNRPYALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRLDGYTGSDIREVCREAVVRIAHEESKKLDEA-----QGVEVGSLGQRLRPVEKADFDAALEKLSASVAARGRELERVREWNNQFGEVR--KKVRPPHM-SMYV 345
            LAQ++HE AL+  V+SP DIGVTY  IGGL +VKE LRQ +TYPL+FPHLYSEGIA ++VKGVLLFGPPGTGKTMLAKAVATEGGA+FLSVDAS +E+KWLGESEKNAKAVFTLARRLAPCVI++DEVDS+LSSR+   +D+ + T+TSVKTT M EWDGL +         S+RV+V+ STNRP+ LD+AVLRR PRRILVDLPD  TR ++L   L+ NR+ P VNLT IA RL+GYTGSDI+EVCREAVV+I+HE+++ LD+      + +  GSL QRLRPV   DF+ AL KL  SV+ +GREL RV EWN+++GE++  KK   PH+ +MY+
Sbjct:    1 LAQDKHERALISQVVSPQDIGVTYDMIGGLNEVKELLRQSITYPLKFPHLYSEGIAREAVKGVLLFGPPGTGKTMLAKAVATEGGASFLSVDASSVENKWLGESEKNAKAVFTLARRLAPCVIFVDEVDSLLSSREGTSDDSAHGTLTSVKTTMMSEWDGLNSGTNGSGEAGSERVVVIGSTNRPFDLDEAVLRRFPRRILVDLPDLETRTEILEVTLAENRLDPEVNLTQIAERLEGYTGSDIKEVCREAVVQISHEQARLLDQGFMNTREDMTQGSL-QRLRPVTAEDFETALNKLKRSVSEKGRELARVWEWNDEYGEIKKEKKNHLPHLANMYL 337          
BLAST of NO08G00700 vs. NCBI_GenBank
Match: OEU16619.1 (AAA-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 385.2 bits (988), Expect = 2.200e-103
Identity = 200/309 (64.72%), Postives = 250/309 (80.91%), Query Frame = 0
Query:   50 IGGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDEVDSILSSRD-QGEDTKYNTITSVKTTFMQEWDGLRT----TSDRVIVVASTNRPYALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRLDGYTGSDIREVCREAVVRIAHEESKKLDEA-----QGVEVGSLGQRLRPVEKADFDAALEKLSASVAARGRELERVREWNNQFGEVRKKVRP---PH-MSMYV 345
            +GGL +VKE LRQ +TYPL+FPHLYSEGIA ++VKGVLLFGPPGTGKTMLAKAVATEGGA+FLSVDAS +E+KWLGESEKNAKAVFTLARRLAPCV+++DEVDS+LSSR+   +D+ + T+TSVKTT M EWDGL +    + DRV+V+ STNRP+ LD+AVLRR PRRILVDLPD  TR ++L   L+ NR+  AVNLT IA RL+GYTGSD++EVCREAVV+I+HE+++ LD+      + +  GSL QRLRPV   DF+ A+ KL  SV+ +GREL RV EWN+++GE+ KK +P   PH M+MY+
Sbjct:    2 VGGLTNVKELLRQSITYPLKFPHLYSEGIAREAVKGVLLFGPPGTGKTMLAKAVATEGGASFLSVDASSVENKWLGESEKNAKAVFTLARRLAPCVVFIDEVDSLLSSREGSSDDSAHGTLTSVKTTMMSEWDGLNSGTNGSGDRVVVIGSTNRPFDLDEAVLRRFPRRILVDLPDLETRAEILEVTLAENRLDSAVNLTQIAERLEGYTGSDLKEVCREAVVQISHEQARLLDQGFDNTREDITEGSL-QRLRPVTVNDFETAMGKLKRSVSEKGRELARVWEWNDEYGEI-KKEKPNNLPHLMNMYL 308          
BLAST of NO08G00700 vs. NCBI_GenBank
Match: XP_009040157.1 (hypothetical protein AURANDRAFT_3580, partial [Aureococcus anophagefferens] >EGB05138.1 hypothetical protein AURANDRAFT_3580, partial [Aureococcus anophagefferens])

HSP 1 Score: 379.8 bits (974), Expect = 9.000e-102
Identity = 184/311 (59.16%), Postives = 245/311 (78.78%), Query Frame = 0
Query:   27 NRHEHALVPNVISPTDIGVTYQEIGGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLAKAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDEVDSILSSRDQGEDTKYNTITSVKTTFMQEWDGLRTTSDRVIVVASTNRPYALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRLDGYTGSDIREVCREAVVRIAHEESKKLDEAQGVEVGSLG-QRLRPVEKADFDAALEKLSASVAARGRELERVREWNNQFGEVRKKVR 337
            ++HE AL+ NV++P+D+ VTY  IGGL   K  LR+ +TYPL++P LY EG+A ++ KGVLLFGPPGTGKTMLAKAVATEGGA+FL+VDAS IE+KWLGESEKNAKAVF+LAR+LAPCV++ DE+D++LSSR+ G+DT + T+TSVKTT MQEWDGL+TT DRV+V+ STNRPY LD+AVLRR+PRR+LVDLPD+A+R  +L   L+ NR+  +V+L  +A +L+GY+GSD +EVCREA+     E +   D+ +     +L   +LR    ADF+AA+ KLS+SVA  G E+ +V EWN Q+GEV+K+ +
Sbjct:    1 DKHEKALLGNVVAPSDVAVTYDMIGGLDAAKTALREAITYPLKYPALYEEGVAREACKGVLLFGPPGTGKTMLAKAVATEGGASFLAVDASAIENKWLGESEKNAKAVFSLARKLAPCVVFFDEIDAVLSSREGGDDTSHGTLTSVKTTLMQEWDGLKTTRDRVVVIGSTNRPYDLDEAVLRRLPRRVLVDLPDKASRRAILDVTLARNRLDASVDLDGVAAKLEGYSGSDCKEVCREAIHADELEATALTDDLKAKCAAALDPPKLREARAADFEAAIAKLSSSVADSGPEMAKVLEWNAQYGEVKKRTK 311          
The following BLAST results are available for this feature:
BLAST of NO08G00700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26552.13.400e-18194.48katanin p60 atpase-containing subunit [Nannochloro... [more]
CBN73875.17.300e-12869.60conserved unknown protein [Ectocarpus siliculosus][more]
CEL97961.14.900e-12462.29unnamed protein product [Vitrella brassicaformis C... [more]
GAX13425.16.700e-12166.19hypothetical protein FisN_34Lh023 [Fistulifera sol... [more]
GAX11255.11.100e-12064.93hypothetical protein FisN_34Hh023 [Fistulifera sol... [more]
EJK76019.12.200e-11663.22hypothetical protein THAOC_02237 [Thalassiosira oc... [more]
XP_002286946.13.500e-11463.96predicted protein, partial [Thalassiosira pseudona... [more]
XP_002177425.12.300e-11364.50predicted protein, partial [Phaeodactylum tricornu... [more]
OEU16619.12.200e-10364.72AAA-domain-containing protein [Fragilariopsis cyli... [more]
XP_009040157.19.000e-10259.16hypothetical protein AURANDRAFT_3580, partial [Aur... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008990NSK008990Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00700.1NO08G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552743gene_3400Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100084g8gene3974Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00700.1NO08G00700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00700 ID=NO08G00700|Name=NO08G00700|organism=Nannochloropsis oceanica|type=gene|length=1382bp
ATGGTGTGCAAGACCAGCGTGCCGCGCCCGGGGAACCCGATCTCGAGGAC
GAAGGAGGAGGTGACGGCCTTGGCGCAGAACAGGCACGAGCACGCCCTGG
TCCCTAACGTGATCTCCCCGACTGATATTGGTGTGACGTACCAAGAAATC
GGTGGCTTGGCCGATGTGAAGGAGACGCTGAGGCAGTGTGTGACGTACCC
CCTGCGGTTTCCTCATTTGTACAGTGAGGGGATCGCGGCCGACTCGGTCA
AGGGCGTGTTGTTGTTTGGgtgaggagggagggagggagggagggaggga
ggatgtatggacgtatgtcccgtcattcaaagcaacaagtcatctgaaaa
ctcaaccaatcaaaaccaaccctccctcccttcatccatccatccatgcc
tcctttcttccttccattcctcgcttcttctctcgcagACCTCCGGGGAC
GGGCAAAACGATGCTGGCCAAGGCGGTCGCGACCGAGGGAGGGGCGACCT
TCCTCTCGGTGGACGCCTCGGTAATTGAGAGCAAATGGTTGGGGGAGAGC
GAGAAGAACGCTAAGGCCGTTTTTACCCTGGCGCGACGCCTGGCCCCGTG
CGTGATTTATCTGGACGAGGTGGACTCCATTTTGAGCAGTCGGGACCAGG
GGGAAGACACCAAGTACAACACCATTACGAGCGTCAAGACGACCTTCATG
CAGGAGTGGGACGGGCTGCGGACGACGAGCGACCGGGTGATTGTCGTGGC
GAGCACCAACAGGCCTTATGCATTGGACCAGGCGGTGTTGCGGAGAATGC
CAAGGCGGATTTTAGTGGACCTACCCGACCAAGCGACGAGGGAGGATATG
TTGCACAAGgtgagggagaaagaggacgggcaaagacagggggggggggg
gggggggggtcaacaagatttatctagaaagtggaaatctacgtcagcag
caggaacaaaagagattctcctcactctttctttctctccctgtccctcc
tttcctttctccttccgtccttccctcccctcgtcagATTCTCTCTTCCA
ACCGTGTCGCACCCGCCGTGAATCTTACGAGCATCGCGAGGCGTCTAGAC
GGCTACACGGGAAGTGACATCAGGGAGGTTTGCCGCGAGGCAGTCGTGCG
AATCGCGCACGAAGAGAGCAAGAAACTGGATGAGGCACAGGGGGTAGAGG
TAGGGTCATTGGGACAACGGTTAAGGCCCGTGGAAAAAGCTGATTTTGAC
GCGGCGTTGGAGAAATTGAGTGCGTCCGTGGCGGCGAGGGGAAGGGAGCT
GGAGCGGGTAAGGGAGTGGAACAACCAGTTTGGGGAGGTGAGGAAGAAGG
TGAGGCCACCGCATATGTCCATGTATGTGTAG
back to top

protein sequence of NO08G00700.1

>NO08G00700.1-protein ID=NO08G00700.1-protein|Name=NO08G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MVCKTSVPRPGNPISRTKEEVTALAQNRHEHALVPNVISPTDIGVTYQEI
GGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLA
KAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDE
VDSILSSRDQGEDTKYNTITSVKTTFMQEWDGLRTTSDRVIVVASTNRPY
ALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRL
DGYTGSDIREVCREAVVRIAHEESKKLDEAQGVEVGSLGQRLRPVEKADF
DAALEKLSASVAARGRELERVREWNNQFGEVRKKVRPPHMSMYV*
back to top
Synonyms
Publications